RNA–Protein interactions for RNA: ENST00000574855.1

NUP88-209, Transcript of nucleoporin 88, humanhuman

TSL 2

Gene NUP88, Length 434 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-209ENST00000574855 ZNF492Q9P255 531 aa2.37□□□□□ -2.03
NUP88-209ENST00000574855 NUFIP1Q9UHK0 495 aaKnown RBP2.37□□□□□ -2.03
NUP88-209ENST00000574855 CELA1Q9UNI1 258 aa2.37□□□□□ -2.03
NUP88-209ENST00000574855 IGHV3-74A0A0B4J1X5 117 aa2.36□□□□□ -2.03
NUP88-209ENST00000574855 TRAV38-1A0A0B4J264 116 aa2.36□□□□□ -2.03
NUP88-209ENST00000574855 PNMA8CA0A1B0GUJ8 204 aa2.36□□□□□ -2.03
NUP88-209ENST00000574855 TMEM72A0PK05 275 aa2.36□□□□□ -2.03
NUP88-209ENST00000574855 IRGMA1A4Y4 181 aa2.36□□□□□ -2.03
NUP88-209ENST00000574855 ARRDC5A6NEK1 342 aa2.36□□□□□ -2.03
NUP88-209ENST00000574855 LY6LH3BQJ8 138 aa2.36□□□□□ -2.03
NUP88-209ENST00000574855 GABARAPH6UMI1 98 aa2.36□□□□□ -2.03
NUP88-209ENST00000574855 M0R143 59 aa2.36□□□□□ -2.03
NUP88-209ENST00000574855 DPM2O94777 84 aa2.36□□□□□ -2.03
NUP88-209ENST00000574855 LTAP01374 205 aa2.36□□□□□ -2.03
NUP88-209ENST00000574855 IGHV3-23P01764 117 aa2.36□□□□□ -2.03
NUP88-209ENST00000574855 HLA-DPB1P04440 258 aa2.36□□□□□ -2.03
NUP88-209ENST00000574855 UCHL1P09936 223 aa2.36□□□□□ -2.03
NUP88-209ENST00000574855 HLA-EP13747 358 aa2.36□□□□□ -2.03
NUP88-209ENST00000574855 OPRM1P35372 400 aa2.36□□□□□ -2.03
NUP88-209ENST00000574855 SSR2P43308 183 aa2.36□□□□□ -2.03
NUP88-209ENST00000574855 COPZ1P61923 177 aa2.36□□□□□ -2.03
NUP88-209ENST00000574855 HBA1P69905 142 aa2.36□□□□□ -2.03
NUP88-209ENST00000574855 FAM78AQ5JUQ0 283 aa2.36□□□□□ -2.03
NUP88-209ENST00000574855 LYPD2Q6UXB3 125 aa2.36□□□□□ -2.03
NUP88-209ENST00000574855 KTN1-AS1Q86SY8 53 aa2.36□□□□□ -2.03
NUP88-209ENST00000574855 PRR15Q8IV56 129 aa2.36□□□□□ -2.03
NUP88-209ENST00000574855 ZNF695Q8IW36 515 aa2.36□□□□□ -2.03
NUP88-209ENST00000574855 CLECL1Q8IZS7 167 aa2.36□□□□□ -2.03
NUP88-209ENST00000574855 OR10G2Q8NGC3 310 aa2.36□□□□□ -2.03
NUP88-209ENST00000574855 OR52R1Q8NGF1 315 aa2.36□□□□□ -2.03
NUP88-209ENST00000574855 TERB2Q8NHR7 220 aa2.36□□□□□ -2.03
NUP88-209ENST00000574855 FAM57AQ8TBR7 257 aa2.36□□□□□ -2.03
NUP88-209ENST00000574855 MRPL30Q8TCC3 161 aaKnown RBP2.36□□□□□ -2.03
NUP88-209ENST00000574855 FGF13Q92913 245 aa2.36□□□□□ -2.03
NUP88-209ENST00000574855 TMEM106AQ96A25 262 aa2.36□□□□□ -2.03
NUP88-209ENST00000574855 ELSPBP1Q96BH3 223 aa2.36□□□□□ -2.03
NUP88-209ENST00000574855 BORCS8Q96FH0 119 aa2.36□□□□□ -2.03
NUP88-209ENST00000574855 ZC2HC1AQ96GY0 325 aa2.36□□□□□ -2.03
NUP88-209ENST00000574855 COX14Q96I36 57 aa2.36□□□□□ -2.03
NUP88-209ENST00000574855 SLC25A21Q9BQT8 299 aaPredicted RBP2.36□□□□□ -2.03
NUP88-209ENST00000574855 GGTLC1Q9BX51 225 aa2.36□□□□□ -2.03
NUP88-209ENST00000574855 NKX6-2Q9C056 277 aaPredicted RBP2.36□□□□□ -2.03
NUP88-209ENST00000574855 OR2J1Q9GZK6 312 aa2.36□□□□□ -2.03
NUP88-209ENST00000574855 IMUPQ9GZP8 106 aa2.36□□□□□ -2.03
NUP88-209ENST00000574855 AICDAQ9GZX7 198 aa2.36□□□□□ -2.03
NUP88-209ENST00000574855 DUSP21Q9H596 190 aa2.36□□□□□ -2.03
NUP88-209ENST00000574855 NAT8Q9UHE5 227 aa2.36□□□□□ -2.03
NUP88-209ENST00000574855 MCTS1Q9ULC4 181 aaKnown RBP2.36□□□□□ -2.03
NUP88-209ENST00000574855 GREB1Q4ZG55 1949 aa2.36□□□□□ -2.03
NUP88-209ENST00000574855 ANKRD36A6QL64 1941 aa2.35□□□□□ -2.03
NUP88-209ENST00000574855 TRBV20OR9-2A0A075B6H5 130 aa2.35□□□□□ -2.03
NUP88-209ENST00000574855 TRAV9-1A0A075B6T8 112 aa2.35□□□□□ -2.03
NUP88-209ENST00000574855 IGHV1-45A0A0A0MS14 117 aa2.35□□□□□ -2.03
NUP88-209ENST00000574855 TRAV41A0A0B4J266 112 aa2.35□□□□□ -2.03
NUP88-209ENST00000574855 SPAARA0A1B0GVQ0 90 aa2.35□□□□□ -2.03
NUP88-209ENST00000574855 IZUMO1RA6ND01 250 aa2.35□□□□□ -2.03
NUP88-209ENST00000574855 DPRXA6NFQ7 191 aa2.35□□□□□ -2.03
NUP88-209ENST00000574855 J3QR89 54 aa2.35□□□□□ -2.03
NUP88-209ENST00000574855 KRTAP5-8O75690 187 aa2.35□□□□□ -2.03
NUP88-209ENST00000574855 SOD1P00441 154 aa2.35□□□□□ -2.03
NUP88-209ENST00000574855 IGLV2-23P01705 113 aa2.35□□□□□ -2.03
NUP88-209ENST00000574855 HLA-DQB1P01920 261 aa2.35□□□□□ -2.03
NUP88-209ENST00000574855 MT-ND4LP03901 98 aa2.35□□□□□ -2.03
NUP88-209ENST00000574855 GPX1P07203 203 aa2.35□□□□□ -2.03
NUP88-209ENST00000574855 IGLC6P0CF74 106 aa2.35□□□□□ -2.03
NUP88-209ENST00000574855 P0DMU3 169 aa2.35□□□□□ -2.03
NUP88-209ENST00000574855 FAM231AP0DMU4 169 aa2.35□□□□□ -2.03
NUP88-209ENST00000574855 FAM231CP0DMU5 169 aa2.35□□□□□ -2.03
NUP88-209ENST00000574855 S100A2P29034 98 aa2.35□□□□□ -2.03
NUP88-209ENST00000574855 RAB5CP51148 216 aa2.35□□□□□ -2.03
NUP88-209ENST00000574855 INSL3P51460 131 aa2.35□□□□□ -2.03
NUP88-209ENST00000574855 CRISP3P54108 245 aa2.35□□□□□ -2.03
NUP88-209ENST00000574855 TAS2R20P59543 309 aa2.35□□□□□ -2.03
NUP88-209ENST00000574855 EIF3IQ13347 325 aaKnown RBP2.35□□□□□ -2.03
NUP88-209ENST00000574855 ZNF141Q15928 474 aa2.35□□□□□ -2.03
NUP88-209ENST00000574855 RTL8BQ17RB0 113 aa2.35□□□□□ -2.03
NUP88-209ENST00000574855 LDLRAD2Q5SZI1 272 aa2.35□□□□□ -2.03
NUP88-209ENST00000574855 LCE3AQ5TA76 89 aa2.35□□□□□ -2.03
NUP88-209ENST00000574855 TMEM244Q5VVB8 128 aa2.35□□□□□ -2.03
NUP88-209ENST00000574855 GLT8D1Q68CQ7 371 aa2.35□□□□□ -2.03
NUP88-209ENST00000574855 XAF1Q6GPH4 301 aa2.35□□□□□ -2.03
NUP88-209ENST00000574855 LAIR2Q6ISS4 152 aa2.35□□□□□ -2.03
NUP88-209ENST00000574855 GLIPR1L1Q6UWM5 242 aa2.35□□□□□ -2.03
NUP88-209ENST00000574855 TMEM14EPQ6UXP3 125 aa2.35□□□□□ -2.03
NUP88-209ENST00000574855 RNF175Q8N4F7 328 aa2.35□□□□□ -2.03
NUP88-209ENST00000574855 KLHL30-AS1Q8NEE0 82 aa2.35□□□□□ -2.03
NUP88-209ENST00000574855 NPBQ8NG41 125 aa2.35□□□□□ -2.03
NUP88-209ENST00000574855 OR11G2Q8NGC1 345 aa2.35□□□□□ -2.03
NUP88-209ENST00000574855 OR4K5Q8NGD3 323 aa2.35□□□□□ -2.03
NUP88-209ENST00000574855 OR51A4Q8NGJ6 313 aa2.35□□□□□ -2.03
NUP88-209ENST00000574855 LCN9Q8WX39 176 aa2.35□□□□□ -2.03
NUP88-209ENST00000574855 MAL2Q969L2 176 aa2.35□□□□□ -2.03
NUP88-209ENST00000574855 ZNF799Q96GE5 643 aa2.35□□□□□ -2.03
NUP88-209ENST00000574855 CYYR1Q96J86 154 aa2.35□□□□□ -2.03
NUP88-209ENST00000574855 SPIN2AQ99865 258 aa2.35□□□□□ -2.03
NUP88-209ENST00000574855 SPIN2BQ9BPZ2 258 aa2.35□□□□□ -2.03
NUP88-209ENST00000574855 PSMG3Q9BT73 122 aaPredicted RBP2.35□□□□□ -2.03
NUP88-209ENST00000574855 ZNF471Q9BX82 626 aaPredicted RBP2.35□□□□□ -2.03
NUP88-209ENST00000574855 OTORQ9NRC9 128 aa2.35□□□□□ -2.03
NUP88-209ENST00000574855 TNFRSF19Q9NS68 423 aa2.35□□□□□ -2.03
Retrieved 100 of 20,778 RNA–protein pairs in 57.7 ms