RNA–Protein interactions for RNA: ENST00000574087.1

NUP88-208, Transcript of nucleoporin 88, humanhuman

TSL 2

Gene NUP88, Length 548 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-208ENST00000574087 RTN4IP1Q8WWV3 396 aaPredicted RBP2.63□□□□□ -1.99
NUP88-208ENST00000574087 CCL17Q92583 94 aa2.63□□□□□ -1.99
NUP88-208ENST00000574087 KLK6Q92876 244 aa2.63□□□□□ -1.99
NUP88-208ENST00000574087 SLC25A44Q96H78 314 aaPredicted RBP2.63□□□□□ -1.99
NUP88-208ENST00000574087 IGF2BP2-AS1Q96M15 143 aa2.63□□□□□ -1.99
NUP88-208ENST00000574087 SNRNP25Q9BV90 132 aaKnown RBP2.63□□□□□ -1.99
NUP88-208ENST00000574087 RTL8AQ9BWD3 113 aa2.63□□□□□ -1.99
NUP88-208ENST00000574087 DPY30Q9C005 99 aa2.63□□□□□ -1.99
NUP88-208ENST00000574087 BET1LQ9NYM9 111 aa2.63□□□□□ -1.99
NUP88-208ENST00000574087 TVP23BQ9NYZ1 205 aa2.63□□□□□ -1.99
NUP88-208ENST00000574087 TRMT112Q9UI30 125 aaKnown RBP2.63□□□□□ -1.99
NUP88-208ENST00000574087 MRPS16Q9Y3D3 137 aaKnown RBP2.63□□□□□ -1.99
NUP88-208ENST00000574087 KCNE3Q9Y6H6 103 aa2.63□□□□□ -1.99
NUP88-208ENST00000574087 NCKAP5O14513 1909 aa2.63□□□□□ -1.99
NUP88-208ENST00000574087 LAMB4A4D0S4 1761 aa2.63□□□□□ -1.99
NUP88-208ENST00000574087 LAMB2P55268 1798 aa2.63□□□□□ -1.99
NUP88-208ENST00000574087 RIMBP3CA6NJZ7 1639 aa2.63□□□□□ -1.99
NUP88-208ENST00000574087 RIMBP3BA6NNM3 1639 aa2.63□□□□□ -1.99
NUP88-208ENST00000574087 PIK3C2BO00750 1634 aa2.63□□□□□ -1.99
NUP88-208ENST00000574087 RIMBP3Q9UFD9 1639 aa2.63□□□□□ -1.99
NUP88-208ENST00000574087 SIPA1L2Q9P2F8 1722 aaPredicted RBP2.62□□□□□ -1.99
NUP88-208ENST00000574087 CICQ96RK0 1608 aaPredicted RBP2.62□□□□□ -1.99
NUP88-208ENST00000574087 IGHV3OR16-9A0A0B4J2B5 98 aa2.62□□□□□ -1.99
NUP88-208ENST00000574087 IRGMA1A4Y4 181 aa2.62□□□□□ -1.99
NUP88-208ENST00000574087 IZUMO1RA6ND01 250 aa2.62□□□□□ -1.99
NUP88-208ENST00000574087 OR51F1A6NGY5 319 aa2.62□□□□□ -1.99
NUP88-208ENST00000574087 CD300LBA8K4G0 201 aa2.62□□□□□ -1.99
NUP88-208ENST00000574087 SIX6O95475 246 aa2.62□□□□□ -1.99
NUP88-208ENST00000574087 KRASP01116 189 aa2.62□□□□□ -1.99
NUP88-208ENST00000574087 APOC2P02655 101 aa2.62□□□□□ -1.99
NUP88-208ENST00000574087 EIF4EP06730 217 aaKnown RBP2.62□□□□□ -1.99
NUP88-208ENST00000574087 PIPP12273 146 aaPredicted RBP2.62□□□□□ -1.99
NUP88-208ENST00000574087 OR10J1P30954 320 aa2.62□□□□□ -1.99
NUP88-208ENST00000574087 GUCA1AP43080 201 aaPredicted RBP2.62□□□□□ -1.99
NUP88-208ENST00000574087 KRTAP10-1P60331 282 aa2.62□□□□□ -1.99
NUP88-208ENST00000574087 RPS11P62280 158 aaKnown RBP eCLIP2.62□□□□□ -1.99
NUP88-208ENST00000574087 PRR3P79522 188 aaKnown RBP2.62□□□□□ -1.99
NUP88-208ENST00000574087 KLRD1Q13241 179 aa2.62□□□□□ -1.99
NUP88-208ENST00000574087 ABCA11PQ4W5N1 156 aa2.62□□□□□ -1.99
NUP88-208ENST00000574087 FKBP1CQ5VVH2 108 aa2.62□□□□□ -1.99
NUP88-208ENST00000574087 ZNF660Q6AZW8 331 aaPredicted RBP2.62□□□□□ -1.99
NUP88-208ENST00000574087 SBSNQ6UWP8 590 aa2.62□□□□□ -1.99
NUP88-208ENST00000574087 LCN15Q6UWW0 184 aa2.62□□□□□ -1.99
NUP88-208ENST00000574087 AMTNQ6UX39 209 aa2.62□□□□□ -1.99
NUP88-208ENST00000574087 ZNF493Q6ZR52 646 aa2.62□□□□□ -1.99
NUP88-208ENST00000574087 VN1R4Q7Z5H5 301 aa2.62□□□□□ -1.99
NUP88-208ENST00000574087 PRR15Q8IV56 129 aa2.62□□□□□ -1.99
NUP88-208ENST00000574087 ZDHHC22Q8N966 263 aa2.62□□□□□ -1.99
NUP88-208ENST00000574087 OR5D14Q8NGL3 314 aa2.62□□□□□ -1.99
NUP88-208ENST00000574087 OR52P1PQ8NH57 321 aa2.62□□□□□ -1.99
NUP88-208ENST00000574087 OR5AK2Q8NH90 309 aa2.62□□□□□ -1.99
NUP88-208ENST00000574087 CIB3Q96Q77 187 aaPredicted RBP2.62□□□□□ -1.99
NUP88-208ENST00000574087 METTL26Q96S19 204 aa2.62□□□□□ -1.99
NUP88-208ENST00000574087 HIST1H2BLQ99880 126 aa2.62□□□□□ -1.99
NUP88-208ENST00000574087 BANF2Q9H503 90 aa2.62□□□□□ -1.99
NUP88-208ENST00000574087 RPUSD1Q9UJJ7 312 aaKnown RBP2.62□□□□□ -1.99
NUP88-208ENST00000574087 AMMECR1Q9Y4X0 333 aaPredicted RBP2.62□□□□□ -1.99
NUP88-208ENST00000574087 LINC00312Q9Y6C7 94 aa2.62□□□□□ -1.99
NUP88-208ENST00000574087 PLIN4Q96Q06 1357 aa2.61□□□□□ -1.99
NUP88-208ENST00000574087 SCN11AQ9UI33 1791 aa2.61□□□□□ -1.99
NUP88-208ENST00000574087 DOCK2Q92608 1830 aa2.61□□□□□ -1.99
NUP88-208ENST00000574087 NUP210LQ5VU65 1888 aa2.61□□□□□ -1.99
NUP88-208ENST00000574087 NUP210Q8TEM1 1887 aaPredicted RBP2.61□□□□□ -1.99
NUP88-208ENST00000574087 TOPAZ1Q8N9V7 1692 aa2.61□□□□□ -1.99
NUP88-208ENST00000574087 RER1O15258 196 aa2.61□□□□□ -1.99
NUP88-208ENST00000574087 CREBL2O60519 120 aaPredicted RBP2.61□□□□□ -1.99
NUP88-208ENST00000574087 CRYGSP22914 178 aa2.61□□□□□ -1.99
NUP88-208ENST00000574087 ZNF93P35789 620 aaPredicted RBP2.61□□□□□ -1.99
NUP88-208ENST00000574087 OPRK1P41145 380 aa2.61□□□□□ -1.99
NUP88-208ENST00000574087 ZNF83P51522 516 aa2.61□□□□□ -1.99
NUP88-208ENST00000574087 FOXA3P55318 350 aaPredicted RBP2.61□□□□□ -1.99
NUP88-208ENST00000574087 RBM11P57052 281 aaKnown RBP2.61□□□□□ -1.99
NUP88-208ENST00000574087 PLGLB1Q02325 96 aa2.61□□□□□ -1.99
NUP88-208ENST00000574087 EIF3IQ13347 325 aaKnown RBP2.61□□□□□ -1.99
NUP88-208ENST00000574087 LY6EQ16553 131 aa2.61□□□□□ -1.99
NUP88-208ENST00000574087 TDRG1Q3Y452 100 aa2.61□□□□□ -1.99
NUP88-208ENST00000574087 Q5W150 140 aa2.61□□□□□ -1.99
NUP88-208ENST00000574087 Q6AWC8 147 aa2.61□□□□□ -1.99
NUP88-208ENST00000574087 TOMM5Q8N4H5 51 aa2.61□□□□□ -1.99
NUP88-208ENST00000574087 TEX29Q8N6K0 151 aa2.61□□□□□ -1.99
NUP88-208ENST00000574087 C15orf40Q8WUR7 153 aa2.61□□□□□ -1.99
NUP88-208ENST00000574087 PSMF1Q92530 271 aa2.61□□□□□ -1.99
NUP88-208ENST00000574087 YPEL4Q96NS1 127 aa2.61□□□□□ -1.99
NUP88-208ENST00000574087 SLC25A21Q9BQT8 299 aaPredicted RBP2.61□□□□□ -1.99
NUP88-208ENST00000574087 TM2D3Q9BRN9 247 aa2.61□□□□□ -1.99
NUP88-208ENST00000574087 VAMP8Q9BV40 100 aa2.61□□□□□ -1.99
NUP88-208ENST00000574087 ATG5Q9H1Y0 275 aa2.61□□□□□ -1.99
NUP88-208ENST00000574087 TCEAL2Q9H3H9 227 aaPredicted RBP2.61□□□□□ -1.99
NUP88-208ENST00000574087 TMEM100Q9NV29 134 aa2.61□□□□□ -1.99
NUP88-208ENST00000574087 TXNL4BQ9NX01 149 aaKnown RBP2.61□□□□□ -1.99
NUP88-208ENST00000574087 MTFP1Q9UDX5 166 aa2.61□□□□□ -1.99
NUP88-208ENST00000574087 FUT9Q9Y231 359 aa2.61□□□□□ -1.99
NUP88-208ENST00000574087 ZNF835Q9Y2P0 537 aa2.61□□□□□ -1.99
NUP88-208ENST00000574087 PXMP4Q9Y6I8 212 aa2.61□□□□□ -1.99
NUP88-208ENST00000574087 MON2Q7Z3U7 1717 aa2.61□□□□□ -1.99
NUP88-208ENST00000574087 TOGARAM1Q9Y4F4 1720 aa2.61□□□□□ -1.99
NUP88-208ENST00000574087 BCORQ6W2J9 1755 aa2.61□□□□□ -1.99
NUP88-208ENST00000574087 UBR2Q8IWV8 1755 aa2.61□□□□□ -1.99
NUP88-208ENST00000574087 DLEC1Q9Y238 1755 aa2.61□□□□□ -1.99
NUP88-208ENST00000574087 AFDNP55196 1824 aaKnown RBP2.61□□□□□ -1.99
Retrieved 100 of 20,778 RNA–protein pairs in 39.9 ms