RNA–Protein interactions for RNA: ENST00000570296.1

CLK3-227, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 916 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-227ENST00000570296 LINC01587Q99440 93 aa12.21□□□□□ -0.45
CLK3-227ENST00000570296 PDCD10Q9BUL8 212 aa12.21□□□□□ -0.45
CLK3-227ENST00000570296 FXYD6Q9H0Q3 95 aa12.21□□□□□ -0.45
CLK3-227ENST00000570296 MSRB1Q9NZV6 116 aa12.21□□□□□ -0.45
CLK3-227ENST00000570296 TRAV18A0A075B6X5 111 aa12.2□□□□□ -0.46
CLK3-227ENST00000570296 NOTOA8MTQ0 251 aa12.2□□□□□ -0.46
CLK3-227ENST00000570296 ELK1P19419 428 aa12.2□□□□□ -0.46
CLK3-227ENST00000570296 ETV6P41212 452 aa12.2□□□□□ -0.46
CLK3-227ENST00000570296 CNN1P51911 297 aaKnown RBP12.2□□□□□ -0.46
CLK3-227ENST00000570296 SUPT4H1P63272 117 aaKnown RBP12.2□□□□□ -0.46
CLK3-227ENST00000570296 MXD1Q05195 221 aa12.2□□□□□ -0.46
CLK3-227ENST00000570296 IZUMO4Q1ZYL8 232 aa12.2□□□□□ -0.46
CLK3-227ENST00000570296 CLVS1Q8IUQ0 354 aaPredicted RBP12.2□□□□□ -0.46
CLK3-227ENST00000570296 RNASE8Q8TDE3 154 aaKnown RBP12.2□□□□□ -0.46
CLK3-227ENST00000570296 TMEM263Q8WUH6 116 aaKnown RBP12.2□□□□□ -0.46
CLK3-227ENST00000570296 RHBDL2Q9NX52 303 aa12.2□□□□□ -0.46
CLK3-227ENST00000570296 A0A0B4J293 547 aa12.19□□□□□ -0.46
CLK3-227ENST00000570296 K7EP13 123 aa12.19□□□□□ -0.46
CLK3-227ENST00000570296 PSG1P11464 419 aa12.19□□□□□ -0.46
CLK3-227ENST00000570296 MEOX2P50222 304 aa12.19□□□□□ -0.46
CLK3-227ENST00000570296 PHLDA2Q53GA4 152 aa12.19□□□□□ -0.46
CLK3-227ENST00000570296 Q6ZSA8 131 aa12.19□□□□□ -0.46
CLK3-227ENST00000570296 TBC1D26Q86UD7 250 aa12.19□□□□□ -0.46
CLK3-227ENST00000570296 CROCCP3Q8IVE0 287 aa12.19□□□□□ -0.46
CLK3-227ENST00000570296 CCDC160A6NGH7 325 aa12.18□□□□□ -0.46
CLK3-227ENST00000570296 GABARAPO95166 117 aa12.18□□□□□ -0.46
CLK3-227ENST00000570296 HTN1P15515 57 aa12.18□□□□□ -0.46
CLK3-227ENST00000570296 HTR2BP41595 481 aa12.18□□□□□ -0.46
CLK3-227ENST00000570296 RFX2P48378 723 aa12.18□□□□□ -0.46
CLK3-227ENST00000570296 KRTAP10-4P60372 401 aaPredicted RBP12.18□□□□□ -0.46
CLK3-227ENST00000570296 VBP1P61758 197 aa12.18□□□□□ -0.46
CLK3-227ENST00000570296 TMED4Q7Z7H5 227 aa12.18□□□□□ -0.46
CLK3-227ENST00000570296 RNASEH2CQ8TDP1 164 aaKnown RBP12.18□□□□□ -0.46
CLK3-227ENST00000570296 RAB2BQ8WUD1 216 aa12.18□□□□□ -0.46
CLK3-227ENST00000570296 VSIG2Q96IQ7 327 aa12.18□□□□□ -0.46
CLK3-227ENST00000570296 C16orf92Q96LL3 132 aa12.18□□□□□ -0.46
CLK3-227ENST00000570296 TRAV12-2A0A075B6T6 113 aa12.17□□□□□ -0.46
CLK3-227ENST00000570296 SMIM30A4D0T7 59 aa12.17□□□□□ -0.46
CLK3-227ENST00000570296 TMBIM6P55061 237 aa12.17□□□□□ -0.46
CLK3-227ENST00000570296 NCS1P62166 190 aa12.17□□□□□ -0.46
CLK3-227ENST00000570296 BCL7BQ9BQE9 202 aa12.17□□□□□ -0.46
CLK3-227ENST00000570296 PBDC1Q9BVG4 233 aa12.17□□□□□ -0.46
CLK3-227ENST00000570296 AUNIPQ9H7T9 357 aa12.17□□□□□ -0.46
CLK3-227ENST00000570296 A0A0A6YYH2 397 aa12.16□□□□□ -0.46
CLK3-227ENST00000570296 A6NJ64 397 aa12.16□□□□□ -0.46
CLK3-227ENST00000570296 ZNF98A6NK75 572 aa12.16□□□□□ -0.46
CLK3-227ENST00000570296 BOLA2-SMG1P6H3BVE0 249 aa12.16□□□□□ -0.46
CLK3-227ENST00000570296 TMEM127O75204 238 aa12.16□□□□□ -0.46
CLK3-227ENST00000570296 IGKV1-5P01602 117 aa12.16□□□□□ -0.46
CLK3-227ENST00000570296 CLEC2LP0C7M8 214 aa12.16□□□□□ -0.46
CLK3-227ENST00000570296 UCP1P25874 307 aa12.16□□□□□ -0.46
CLK3-227ENST00000570296 TAS2R20P59543 309 aa12.16□□□□□ -0.46
CLK3-227ENST00000570296 IDNKQ5T6J7 187 aa12.16□□□□□ -0.46
CLK3-227ENST00000570296 ETFRF1Q6IPR1 90 aa12.16□□□□□ -0.46
CLK3-227ENST00000570296 LPCAT3Q6P1A2 487 aa12.16□□□□□ -0.46
CLK3-227ENST00000570296 NPIPB3Q92617 1050 aa12.16□□□□□ -0.46
CLK3-227ENST00000570296 NAA50Q9GZZ1 169 aaKnown RBP12.16□□□□□ -0.46
CLK3-227ENST00000570296 LY96Q9Y6Y9 160 aa12.16□□□□□ -0.46
CLK3-227ENST00000570296 TNXBP22105 4242 aa12.16□□□□□ -0.46
CLK3-227ENST00000570296 LRCOL1A6NCL2 159 aa12.15□□□□□ -0.46
CLK3-227ENST00000570296 NXPH3O95157 252 aa12.15□□□□□ -0.46
CLK3-227ENST00000570296 RLN2P04090 185 aa12.15□□□□□ -0.46
CLK3-227ENST00000570296 TGFBR1P36897 503 aa12.15□□□□□ -0.46
CLK3-227ENST00000570296 CTF1Q16619 201 aa12.15□□□□□ -0.46
CLK3-227ENST00000570296 OR8I2Q8N0Y5 310 aa12.15□□□□□ -0.46
CLK3-227ENST00000570296 IFT46Q9NQC8 304 aa12.15□□□□□ -0.46
CLK3-227ENST00000570296 GAGE12BA1L429 117 aa12.14□□□□□ -0.47
CLK3-227ENST00000570296 GAGE7O76087 117 aa12.14□□□□□ -0.47
CLK3-227ENST00000570296 GAGE12FP0CL80 117 aa12.14□□□□□ -0.47
CLK3-227ENST00000570296 GAGE12GP0CL81 117 aa12.14□□□□□ -0.47
CLK3-227ENST00000570296 GAGE12IP0CL82 117 aa12.14□□□□□ -0.47
CLK3-227ENST00000570296 ZNF182P17025 639 aaPredicted RBP12.14□□□□□ -0.47
CLK3-227ENST00000570296 RPS19P39019 145 aaKnown RBP12.14□□□□□ -0.47
CLK3-227ENST00000570296 C2orf83Q53S99 150 aa12.14□□□□□ -0.47
CLK3-227ENST00000570296 ACY3Q96HD9 319 aa12.14□□□□□ -0.47
CLK3-227ENST00000570296 LINC00467Q9BRT7 94 aa12.14□□□□□ -0.47
CLK3-227ENST00000570296 MEIS3P1A6NDR6 274 aa12.13□□□□□ -0.47
CLK3-227ENST00000570296 PMP2P02689 132 aa12.13□□□□□ -0.47
CLK3-227ENST00000570296 AKR1C2P52895 323 aa12.13□□□□□ -0.47
CLK3-227ENST00000570296 SCAND1P57086 179 aa12.13□□□□□ -0.47
CLK3-227ENST00000570296 TAS2R46P59540 309 aa12.13□□□□□ -0.47
CLK3-227ENST00000570296 Q8N814 137 aa12.13□□□□□ -0.47
CLK3-227ENST00000570296 OR5H2Q8NGV7 314 aa12.13□□□□□ -0.47
CLK3-227ENST00000570296 RRNAD1Q96FB5 475 aaKnown RBP12.13□□□□□ -0.47
CLK3-227ENST00000570296 TMPRSS5Q9H3S3 457 aa12.13□□□□□ -0.47
CLK3-227ENST00000570296 DIABLOQ9NR28 239 aa12.13□□□□□ -0.47
CLK3-227ENST00000570296 NDUFA13Q9P0J0 144 aa12.13□□□□□ -0.47
CLK3-227ENST00000570296 ATG12O94817 140 aa12.12□□□□□ -0.47
CLK3-227ENST00000570296 GAMTQ14353 236 aa12.12□□□□□ -0.47
CLK3-227ENST00000570296 AP3S1Q92572 193 aa12.12□□□□□ -0.47
CLK3-227ENST00000570296 SLC25A38Q96DW6 304 aa12.12□□□□□ -0.47
CLK3-227ENST00000570296 SLC25A39Q9BZJ4 359 aaPredicted RBP12.12□□□□□ -0.47
CLK3-227ENST00000570296 H7BYZ3 331 aa12.11□□□□□ -0.47
CLK3-227ENST00000570296 GALR1P47211 349 aa12.11□□□□□ -0.47
CLK3-227ENST00000570296 SPCS3P61009 180 aa12.11□□□□□ -0.47
CLK3-227ENST00000570296 MZT2AQ6P582 158 aa12.11□□□□□ -0.47
CLK3-227ENST00000570296 RSL24D1Q9UHA3 163 aaKnown RBP12.11□□□□□ -0.47
CLK3-227ENST00000570296 ANAPC10Q9UM13 185 aa12.11□□□□□ -0.47
CLK3-227ENST00000570296 ICOSQ9Y6W8 199 aa12.11□□□□□ -0.47
CLK3-227ENST00000570296 SMIM31A0A1B0GVY4 71 aa12.1□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms