RNA–Protein interactions for RNA: ENST00000568642.5

VPS35-209, Transcript of VPS35, retromer complex component, humanhuman

TSL 3

Gene VPS35, Length 447 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-209ENST00000568642 ANKRD29Q8N6D5 301 aa2.07□□□□□ -2.08
VPS35-209ENST00000568642 NUP35Q8NFH5 326 aa2.07□□□□□ -2.08
VPS35-209ENST00000568642 LINC01006Q8NI28 216 aa2.07□□□□□ -2.08
VPS35-209ENST00000568642 CANT1Q8WVQ1 401 aa2.07□□□□□ -2.08
VPS35-209ENST00000568642 CNBD2Q96M20 576 aa2.07□□□□□ -2.08
VPS35-209ENST00000568642 OR2M2Q96R28 347 aa2.07□□□□□ -2.08
VPS35-209ENST00000568642 F2RL3Q96RI0 385 aa2.07□□□□□ -2.08
VPS35-209ENST00000568642 GPER1Q99527 375 aa2.07□□□□□ -2.08
VPS35-209ENST00000568642 HSD17B10Q99714 261 aaKnown RBP2.07□□□□□ -2.08
VPS35-209ENST00000568642 LITAFQ99732 161 aa2.07□□□□□ -2.08
VPS35-209ENST00000568642 TSSK6Q9BXA6 273 aa2.07□□□□□ -2.08
VPS35-209ENST00000568642 C20orf27Q9GZN8 174 aa2.07□□□□□ -2.08
VPS35-209ENST00000568642 PBOV1Q9GZY1 135 aa2.07□□□□□ -2.08
VPS35-209ENST00000568642 MED28Q9H204 178 aa2.07□□□□□ -2.08
VPS35-209ENST00000568642 IFI27L2Q9H2X8 130 aa2.07□□□□□ -2.08
VPS35-209ENST00000568642 PTGES2Q9H7Z7 377 aa2.07□□□□□ -2.08
VPS35-209ENST00000568642 ZNF556Q9HAH1 456 aa2.07□□□□□ -2.08
VPS35-209ENST00000568642 SPANXA1Q9NS26 97 aa2.07□□□□□ -2.08
VPS35-209ENST00000568642 TMEM38BQ9NVV0 291 aa2.07□□□□□ -2.08
VPS35-209ENST00000568642 CALML5Q9NZT1 146 aa2.07□□□□□ -2.08
VPS35-209ENST00000568642 TNFSF18Q9UNG2 199 aa2.07□□□□□ -2.08
VPS35-209ENST00000568642 SSR3Q9UNL2 185 aa2.07□□□□□ -2.08
VPS35-209ENST00000568642 HIGD1AQ9Y241 93 aa2.07□□□□□ -2.08
VPS35-209ENST00000568642 RBM7Q9Y580 266 aaKnown RBP2.07□□□□□ -2.08
VPS35-209ENST00000568642 EXPH5Q8NEV8 1989 aa2.07□□□□□ -2.08
VPS35-209ENST00000568642 hCG_1818297A0A087WSY0 165 aa2.06□□□□□ -2.08
VPS35-209ENST00000568642 LOC102724200A0A096LPH7 203 aaPredicted RBP2.06□□□□□ -2.08
VPS35-209ENST00000568642 TRAV41A0A0B4J266 112 aa2.06□□□□□ -2.08
VPS35-209ENST00000568642 IGHV5-10-1A0A0J9YXX1 117 aa2.06□□□□□ -2.08
VPS35-209ENST00000568642 A0A1B0GVX0 72 aa2.06□□□□□ -2.08
VPS35-209ENST00000568642 TMEM269A0A1B0GVZ9 245 aa2.06□□□□□ -2.08
VPS35-209ENST00000568642 A8MT66 165 aa2.06□□□□□ -2.08
VPS35-209ENST00000568642 CLDN25C9JDP6 229 aa2.06□□□□□ -2.08
VPS35-209ENST00000568642 GNG7O60262 68 aa2.06□□□□□ -2.08
VPS35-209ENST00000568642 ZNF354AO60765 605 aaPredicted RBP2.06□□□□□ -2.08
VPS35-209ENST00000568642 TBL1XO60907 577 aa2.06□□□□□ -2.08
VPS35-209ENST00000568642 CDS2O95674 445 aa2.06□□□□□ -2.08
VPS35-209ENST00000568642 IGKV1-5P01602 117 aa2.06□□□□□ -2.08
VPS35-209ENST00000568642 FABP3P05413 133 aa2.06□□□□□ -2.08
VPS35-209ENST00000568642 CRISP2P16562 243 aa2.06□□□□□ -2.08
VPS35-209ENST00000568642 PSMB8P28062 276 aa2.06□□□□□ -2.08
VPS35-209ENST00000568642 PPP1CCP36873 323 aaKnown RBP2.06□□□□□ -2.08
VPS35-209ENST00000568642 MDH2P40926 338 aaKnown RBP2.06□□□□□ -2.08
VPS35-209ENST00000568642 ZNF136P52737 540 aa2.06□□□□□ -2.08
VPS35-209ENST00000568642 CMC4P56277 68 aaPredicted RBP2.06□□□□□ -2.08
VPS35-209ENST00000568642 NANOS2P60321 138 aaKnown RBP2.06□□□□□ -2.08
VPS35-209ENST00000568642 FGF12P61328 243 aa2.06□□□□□ -2.08
VPS35-209ENST00000568642 RAP1AP62834 184 aa2.06□□□□□ -2.08
VPS35-209ENST00000568642 BATFQ16520 125 aa2.06□□□□□ -2.08
VPS35-209ENST00000568642 ORMDL2Q53FV1 153 aa2.06□□□□□ -2.08
VPS35-209ENST00000568642 OCIAD2Q56VL3 154 aa2.06□□□□□ -2.08
VPS35-209ENST00000568642 NXNL2Q5VZ03 156 aa2.06□□□□□ -2.08
VPS35-209ENST00000568642 C2orf66Q6UXQ4 117 aa2.06□□□□□ -2.08
VPS35-209ENST00000568642 C18orf65Q6ZTR6 163 aa2.06□□□□□ -2.08
VPS35-209ENST00000568642 MDP1Q86V88 176 aa2.06□□□□□ -2.08
VPS35-209ENST00000568642 GPHB5Q86YW7 130 aa2.06□□□□□ -2.08
VPS35-209ENST00000568642 OR51T1Q8NGJ9 327 aa2.06□□□□□ -2.08
VPS35-209ENST00000568642 OR10D4PQ8NGN7 298 aa2.06□□□□□ -2.08
VPS35-209ENST00000568642 SLC7A6Q92536 515 aa2.06□□□□□ -2.08
VPS35-209ENST00000568642 FRZBQ92765 325 aa2.06□□□□□ -2.08
VPS35-209ENST00000568642 GNPNAT1Q96EK6 184 aaPredicted RBP2.06□□□□□ -2.08
VPS35-209ENST00000568642 CCL13Q99616 98 aa2.06□□□□□ -2.08
VPS35-209ENST00000568642 NRTNQ99748 197 aa2.06□□□□□ -2.08
VPS35-209ENST00000568642 NRIP2Q9BQI9 281 aa2.06□□□□□ -2.08
VPS35-209ENST00000568642 MRPL20Q9BYC9 149 aaKnown RBP2.06□□□□□ -2.08
VPS35-209ENST00000568642 OR2H1Q9GZK4 316 aa2.06□□□□□ -2.08
VPS35-209ENST00000568642 FGF23Q9GZV9 251 aaPredicted RBP2.06□□□□□ -2.08
VPS35-209ENST00000568642 PARP12Q9H0J9 701 aaKnown RBP2.06□□□□□ -2.08
VPS35-209ENST00000568642 LPAR5Q9H1C0 372 aa2.06□□□□□ -2.08
VPS35-209ENST00000568642 C11orf68Q9H3H3 251 aaKnown RBP2.06□□□□□ -2.08
VPS35-209ENST00000568642 SLC25A22Q9H936 323 aa2.06□□□□□ -2.08
VPS35-209ENST00000568642 CXorf21Q9HAI6 301 aa2.06□□□□□ -2.08
VPS35-209ENST00000568642 FGF22Q9HCT0 170 aa2.06□□□□□ -2.08
VPS35-209ENST00000568642 C8orf17Q9NRJ1 99 aa2.06□□□□□ -2.08
VPS35-209ENST00000568642 LAMTOR2Q9Y2Q5 125 aa2.06□□□□□ -2.08
VPS35-209ENST00000568642 CPAMD8Q8IZJ3 1885 aa2.05□□□□□ -2.08
VPS35-209ENST00000568642 TRAV8-1A0A0A6YYK1 113 aa2.05□□□□□ -2.08
VPS35-209ENST00000568642 IGHV3-74A0A0B4J1X5 117 aa2.05□□□□□ -2.08
VPS35-209ENST00000568642 A0A0D9SEW6 157 aa2.05□□□□□ -2.08
VPS35-209ENST00000568642 A0A1B0GV50 99 aa2.05□□□□□ -2.08
VPS35-209ENST00000568642 TRDV1A0A1B0GX56 115 aa2.05□□□□□ -2.08
VPS35-209ENST00000568642 IZUMO1RA6ND01 250 aa2.05□□□□□ -2.08
VPS35-209ENST00000568642 CD300LBA8K4G0 201 aa2.05□□□□□ -2.08
VPS35-209ENST00000568642 FABP5P3A8MUU1 101 aa2.05□□□□□ -2.08
VPS35-209ENST00000568642 KRTAP16-1A8MUX0 517 aa2.05□□□□□ -2.08
VPS35-209ENST00000568642 ZNF705GA8MUZ8 300 aaPredicted RBP2.05□□□□□ -2.08
VPS35-209ENST00000568642 C10orf142B7Z368 130 aa2.05□□□□□ -2.08
VPS35-209ENST00000568642 NDUFC2-KCTD14E9PQ53 114 aa2.05□□□□□ -2.08
VPS35-209ENST00000568642 K7EPK0 472 aa2.05□□□□□ -2.08
VPS35-209ENST00000568642 BMPR1BO00238 502 aa2.05□□□□□ -2.08
VPS35-209ENST00000568642 COX7A2LO14548 114 aa2.05□□□□□ -2.08
VPS35-209ENST00000568642 OVOL1O14753 267 aa2.05□□□□□ -2.08
VPS35-209ENST00000568642 COX7A2P2O60397 106 aa2.05□□□□□ -2.08
VPS35-209ENST00000568642 DEDDO75618 318 aa2.05□□□□□ -2.08
VPS35-209ENST00000568642 TSPAN19P0C672 248 aa2.05□□□□□ -2.08
VPS35-209ENST00000568642 TLX1NBP0CAT3 122 aa2.05□□□□□ -2.08
VPS35-209ENST00000568642 TGFBR1P36897 503 aa2.05□□□□□ -2.08
VPS35-209ENST00000568642 ZNF80P51504 273 aaPredicted RBP2.05□□□□□ -2.08
VPS35-209ENST00000568642 EMP1P54849 157 aa2.05□□□□□ -2.08
VPS35-209ENST00000568642 TAS2R30P59541 319 aa2.05□□□□□ -2.08
Retrieved 100 of 20,778 RNA–protein pairs in 33 ms