RNA–Protein interactions for RNA: ENST00000568076.6

CLN3-230, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,968 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-230ENST00000568076 LPAR2Q9HBW0 351 aa15.95■□□□□ 0.14
CLN3-230ENST00000568076 SERTAD4Q9NUC0 356 aa15.95■□□□□ 0.14
CLN3-230ENST00000568076 SMIM27A0A1W2PRY6 76 aa15.94■□□□□ 0.14
CLN3-230ENST00000568076 ZNF705GA8MUZ8 300 aaPredicted RBP15.94■□□□□ 0.14
CLN3-230ENST00000568076 C5orf17Q8NAS9 161 aa15.94■□□□□ 0.14
CLN3-230ENST00000568076 MRPL18Q9H0U6 180 aaKnown RBP15.94■□□□□ 0.14
CLN3-230ENST00000568076 H3BRN7 92 aa15.93■□□□□ 0.14
CLN3-230ENST00000568076 SPINK4O60575 86 aa15.93■□□□□ 0.14
CLN3-230ENST00000568076 FAM106CPP0CH98 169 aa15.93■□□□□ 0.14
CLN3-230ENST00000568076 SLC35B1P78383 322 aa15.93■□□□□ 0.14
CLN3-230ENST00000568076 FAM231DQ6ZW35 169 aa15.93■□□□□ 0.14
CLN3-230ENST00000568076 MBD6Q96DN6 1003 aa15.93■□□□□ 0.14
CLN3-230ENST00000568076 RNF125Q96EQ8 232 aa15.93■□□□□ 0.14
CLN3-230ENST00000568076 ATG101Q9BSB4 218 aa15.93■□□□□ 0.14
CLN3-230ENST00000568076 SHANK2-AS3Q9BTD1 123 aa15.93■□□□□ 0.14
CLN3-230ENST00000568076 IGSF10Q6WRI0 2623 aa15.93■□□□□ 0.14
CLN3-230ENST00000568076 WI2-2373I1.2A0A1W2PRP0 233 aa15.93■□□□□ 0.14
CLN3-230ENST00000568076 IL4P05112 153 aa15.93■□□□□ 0.14
CLN3-230ENST00000568076 HIST1H1EP10412 219 aaKnown RBP15.93■□□□□ 0.14
CLN3-230ENST00000568076 UBE2G1P62253 170 aa15.93■□□□□ 0.14
CLN3-230ENST00000568076 PIP4P2Q8N4L2 257 aa15.93■□□□□ 0.14
CLN3-230ENST00000568076 HSPB9Q9BQS6 159 aa15.93■□□□□ 0.14
CLN3-230ENST00000568076 COL12A1Q99715 3063 aa15.92■□□□□ 0.14
CLN3-230ENST00000568076 GNG7O60262 68 aa15.92■□□□□ 0.14
CLN3-230ENST00000568076 NDUFB8O95169 186 aa15.92■□□□□ 0.14
CLN3-230ENST00000568076 TCRAP04437 139 aa15.92■□□□□ 0.14
CLN3-230ENST00000568076 BCL6BQ8N143 479 aaPredicted RBP15.92■□□□□ 0.14
CLN3-230ENST00000568076 NUDT10Q8NFP7 164 aa15.92■□□□□ 0.14
CLN3-230ENST00000568076 NUDT11Q96G61 164 aa15.92■□□□□ 0.14
CLN3-230ENST00000568076 ZNF48Q96MX3 618 aaPredicted RBP15.92■□□□□ 0.14
CLN3-230ENST00000568076 SNURFLB1AK76 121 aa15.91■□□□□ 0.14
CLN3-230ENST00000568076 MFAP4P55083 255 aa15.91■□□□□ 0.14
CLN3-230ENST00000568076 TMEM256Q8N2U0 113 aa15.91■□□□□ 0.14
CLN3-230ENST00000568076 TMEM68Q96MH6 324 aa15.91■□□□□ 0.14
CLN3-230ENST00000568076 MLST8Q9BVC4 326 aa15.91■□□□□ 0.14
CLN3-230ENST00000568076 GRIFINA4D1Z8 144 aa15.91■□□□□ 0.14
CLN3-230ENST00000568076 NUPR1O60356 82 aa15.91■□□□□ 0.14
CLN3-230ENST00000568076 HLA-DRB1P01911 266 aa15.91■□□□□ 0.14
CLN3-230ENST00000568076 USF2Q15853 346 aaPredicted RBP15.91■□□□□ 0.14
CLN3-230ENST00000568076 PRR27Q6MZM9 219 aa15.91■□□□□ 0.14
CLN3-230ENST00000568076 EXOC3-AS1Q8N2X6 119 aa15.91■□□□□ 0.14
CLN3-230ENST00000568076 GPR82Q96P67 336 aa15.91■□□□□ 0.14
CLN3-230ENST00000568076 GNB1LQ9BYB4 327 aa15.91■□□□□ 0.14
CLN3-230ENST00000568076 OTORQ9NRC9 128 aa15.91■□□□□ 0.14
CLN3-230ENST00000568076 TRAV30A0A087WSZ9 112 aa15.9■□□□□ 0.14
CLN3-230ENST00000568076 LINC00587B1AMM8 73 aa15.9■□□□□ 0.14
CLN3-230ENST00000568076 OR2J3O76001 311 aa15.9■□□□□ 0.14
CLN3-230ENST00000568076 IGHV3-23P01764 117 aa15.9■□□□□ 0.14
CLN3-230ENST00000568076 GBGT1Q8N5D6 347 aa15.9■□□□□ 0.14
CLN3-230ENST00000568076 C17orf77Q96MU5 243 aa15.9■□□□□ 0.14
CLN3-230ENST00000568076 C21orf62Q9NYP8 219 aa15.9■□□□□ 0.14
CLN3-230ENST00000568076 C1RLQ9NZP8 487 aa15.9■□□□□ 0.14
CLN3-230ENST00000568076 TP53TG3Q9ULZ0 132 aa15.9■□□□□ 0.14
CLN3-230ENST00000568076 POLR3KQ9Y2Y1 108 aaPredicted RBP15.9■□□□□ 0.14
CLN3-230ENST00000568076 CENPVL3A0A0U1RRI6 287 aa15.89■□□□□ 0.13
CLN3-230ENST00000568076 NPFFO15130 113 aa15.89■□□□□ 0.13
CLN3-230ENST00000568076 GATCO43716 136 aaKnown RBP15.89■□□□□ 0.13
CLN3-230ENST00000568076 RNF224P0DH78 156 aa15.89■□□□□ 0.13
CLN3-230ENST00000568076 FMC1Q96HJ9 113 aa15.89■□□□□ 0.13
CLN3-230ENST00000568076 VPS13CQ709C8 3753 aa15.89■□□□□ 0.13
CLN3-230ENST00000568076 TRBV19A0A075B6N1 114 aa15.89■□□□□ 0.13
CLN3-230ENST00000568076 TRBV9A0A0B4J1U6 114 aa15.89■□□□□ 0.13
CLN3-230ENST00000568076 MRPS12O15235 138 aaKnown RBP15.89■□□□□ 0.13
CLN3-230ENST00000568076 LTAP01374 205 aa15.89■□□□□ 0.13
CLN3-230ENST00000568076 IGLC2P0DOY2 106 aa15.89■□□□□ 0.13
CLN3-230ENST00000568076 BRS3P32247 399 aa15.89■□□□□ 0.13
CLN3-230ENST00000568076 Q56UQ5 140 aa15.89■□□□□ 0.13
CLN3-230ENST00000568076 TMEM136Q6ZRR5 245 aa15.89■□□□□ 0.13
CLN3-230ENST00000568076 BPIFA4PQ86YQ2 179 aa15.89■□□□□ 0.13
CLN3-230ENST00000568076 SMIM12Q96EX1 92 aa15.89■□□□□ 0.13
CLN3-230ENST00000568076 MRPL54Q6P161 138 aaKnown RBP15.88■□□□□ 0.13
CLN3-230ENST00000568076 LINC00322Q6ZN03 302 aaPredicted RBP15.88■□□□□ 0.13
CLN3-230ENST00000568076 GRAMD2BQ96HH9 432 aa15.88■□□□□ 0.13
CLN3-230ENST00000568076 CCL19Q99731 98 aa15.88■□□□□ 0.13
CLN3-230ENST00000568076 SPTAN1Q13813 2472 aaKnown RBP15.88■□□□□ 0.13
CLN3-230ENST00000568076 IGHV4-61A0A0C4DH41 118 aa15.87■□□□□ 0.13
CLN3-230ENST00000568076 IZUMO1RA6ND01 250 aa15.87■□□□□ 0.13
CLN3-230ENST00000568076 FCGR2BP31994 310 aaPredicted RBP15.87■□□□□ 0.13
CLN3-230ENST00000568076 THYN1Q9P016 225 aa15.87■□□□□ 0.13
CLN3-230ENST00000568076 ABCA2Q9BZC7 2435 aa15.87■□□□□ 0.13
CLN3-230ENST00000568076 LINC00310P59036 64 aa15.87■□□□□ 0.13
CLN3-230ENST00000568076 PAX8Q06710 450 aa15.87■□□□□ 0.13
CLN3-230ENST00000568076 JOSD1Q15040 202 aaPredicted RBP15.87■□□□□ 0.13
CLN3-230ENST00000568076 TMEM18Q96B42 140 aa15.87■□□□□ 0.13
CLN3-230ENST00000568076 PRDM13Q9H4Q3 707 aa15.87■□□□□ 0.13
CLN3-230ENST00000568076 NAT8BQ9UHF3 227 aa15.87■□□□□ 0.13
CLN3-230ENST00000568076 TRAV8-1A0A0A6YYK1 113 aa15.86■□□□□ 0.13
CLN3-230ENST00000568076 OR2T8A6NH00 312 aa15.86■□□□□ 0.13
CLN3-230ENST00000568076 IGLV2-11P01706 119 aa15.86■□□□□ 0.13
CLN3-230ENST00000568076 DNLZQ5SXM8 178 aa15.86■□□□□ 0.13
CLN3-230ENST00000568076 OR4F17Q8NGA8 305 aa15.86■□□□□ 0.13
CLN3-230ENST00000568076 FBXL7Q9UJT9 491 aa15.86■□□□□ 0.13
CLN3-230ENST00000568076 ATP6V0E1O15342 81 aa15.86■□□□□ 0.13
CLN3-230ENST00000568076 GZMBP10144 247 aa15.86■□□□□ 0.13
CLN3-230ENST00000568076 WDR73Q6P4I2 378 aa15.86■□□□□ 0.13
CLN3-230ENST00000568076 SIGLEC15Q6ZMC9 328 aa15.86■□□□□ 0.13
CLN3-230ENST00000568076 Q71RC1 249 aaPredicted RBP15.86■□□□□ 0.13
CLN3-230ENST00000568076 C10orf105Q8TEF2 133 aa15.86■□□□□ 0.13
CLN3-230ENST00000568076 PIMREGQ9BSJ6 248 aa15.86■□□□□ 0.13
CLN3-230ENST00000568076 FLNCQ14315 2725 aa15.85■□□□□ 0.13
Retrieved 100 of 20,778 RNA–protein pairs in 43.3 ms