RNA–Protein interactions for RNA: ENST00000566354.1

VPS4A-204, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 1 (best)

Gene VPS4A, Length 2,329 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-204ENST00000566354 UQCR10Q9UDW1 63 aa10.67□□□□□ -0.7
VPS4A-204ENST00000566354 SMAD7O15105 426 aaKnown RBP10.66□□□□□ -0.7
VPS4A-204ENST00000566354 COX7A2P2O60397 106 aa10.66□□□□□ -0.7
VPS4A-204ENST00000566354 NDUFB8O95169 186 aa10.66□□□□□ -0.7
VPS4A-204ENST00000566354 CA1P00915 261 aaPredicted RBP10.66□□□□□ -0.7
VPS4A-204ENST00000566354 C3orf79P0CE67 100 aa10.66□□□□□ -0.7
VPS4A-204ENST00000566354 BATFQ16520 125 aa10.66□□□□□ -0.7
VPS4A-204ENST00000566354 TEX36Q5VZQ5 186 aa10.66□□□□□ -0.7
VPS4A-204ENST00000566354 PRR27Q6MZM9 219 aa10.66□□□□□ -0.7
VPS4A-204ENST00000566354 FAM168AQ92567 244 aa10.66□□□□□ -0.7
VPS4A-204ENST00000566354 BORCS7Q96B45 105 aa10.66□□□□□ -0.7
VPS4A-204ENST00000566354 LINC00479Q96M42 142 aa10.66□□□□□ -0.7
VPS4A-204ENST00000566354 CHRDL1Q9BU40 450 aa10.66□□□□□ -0.7
VPS4A-204ENST00000566354 ZNRD1Q9P1U0 126 aa10.66□□□□□ -0.7
VPS4A-204ENST00000566354 ARFGEF3Q5TH69 2177 aa10.66□□□□□ -0.7
VPS4A-204ENST00000566354 TM4SF20Q53R12 229 aa10.66□□□□□ -0.7
VPS4A-204ENST00000566354 TMEM177Q53S58 311 aa10.66□□□□□ -0.7
VPS4A-204ENST00000566354 C10orf113Q5VZT2 155 aa10.66□□□□□ -0.7
VPS4A-204ENST00000566354 NHLRC2Q8NBF2 726 aa10.66□□□□□ -0.7
VPS4A-204ENST00000566354 OR5AN1Q8NGI8 311 aa10.66□□□□□ -0.7
VPS4A-204ENST00000566354 C18orf32Q8TCD1 76 aa10.66□□□□□ -0.7
VPS4A-204ENST00000566354 GRAMD2BQ96HH9 432 aa10.66□□□□□ -0.7
VPS4A-204ENST00000566354 PAXXQ9BUH6 204 aa10.66□□□□□ -0.7
VPS4A-204ENST00000566354 MRPL20Q9BYC9 149 aaKnown RBP10.66□□□□□ -0.7
VPS4A-204ENST00000566354 ZNF355PQ9NSJ1 428 aa10.66□□□□□ -0.7
VPS4A-204ENST00000566354 H0YJW9 148 aa10.65□□□□□ -0.7
VPS4A-204ENST00000566354 LIPFP07098 398 aa10.65□□□□□ -0.7
VPS4A-204ENST00000566354 IGLC2P0DOY2 106 aa10.65□□□□□ -0.7
VPS4A-204ENST00000566354 IGLC3P0DOY3 106 aa10.65□□□□□ -0.7
VPS4A-204ENST00000566354 LOXP28300 417 aaPredicted RBP10.65□□□□□ -0.7
VPS4A-204ENST00000566354 SUB1P53999 127 aaKnown RBP eCLIP10.65□□□□□ -0.7
VPS4A-204ENST00000566354 MEF2CQ06413 473 aaPredicted RBP10.65□□□□□ -0.7
VPS4A-204ENST00000566354 ZNF329Q86UD4 541 aa10.65□□□□□ -0.7
VPS4A-204ENST00000566354 KLHDC1Q8N7A1 406 aa10.65□□□□□ -0.7
VPS4A-204ENST00000566354 OR4A5Q8NH83 315 aa10.65□□□□□ -0.7
VPS4A-204ENST00000566354 VSTM2AQ8TAG5 236 aa10.65□□□□□ -0.7
VPS4A-204ENST00000566354 ZNF596Q8TC21 504 aa10.65□□□□□ -0.7
VPS4A-204ENST00000566354 FLYWCH2Q96CP2 140 aaKnown RBP10.65□□□□□ -0.7
VPS4A-204ENST00000566354 SSBP3Q9BWW4 388 aaPredicted RBP10.65□□□□□ -0.7
VPS4A-204ENST00000566354 RAI1Q7Z5J4 1906 aaPredicted RBP10.65□□□□□ -0.7
VPS4A-204ENST00000566354 PEX7O00628 323 aa10.64□□□□□ -0.71
VPS4A-204ENST00000566354 MFAP2P55001 183 aa10.64□□□□□ -0.71
VPS4A-204ENST00000566354 SAMD13Q5VXD3 122 aa10.64□□□□□ -0.71
VPS4A-204ENST00000566354 ZCCHC24Q8N2G6 241 aaKnown RBP10.64□□□□□ -0.71
VPS4A-204ENST00000566354 FAM19A2Q8N3H0 131 aa10.64□□□□□ -0.71
VPS4A-204ENST00000566354 TCRBV4S1A1TA0A5B7 111 aa10.64□□□□□ -0.71
VPS4A-204ENST00000566354 PYYP10082 97 aa10.64□□□□□ -0.71
VPS4A-204ENST00000566354 NUP35Q8NFH5 326 aa10.64□□□□□ -0.71
VPS4A-204ENST00000566354 OR4C13Q8NGP0 309 aa10.64□□□□□ -0.71
VPS4A-204ENST00000566354 TMEM167AQ8TBQ9 72 aa10.64□□□□□ -0.71
VPS4A-204ENST00000566354 CORTO00230 105 aa10.63□□□□□ -0.71
VPS4A-204ENST00000566354 HYPMO75409 117 aa10.63□□□□□ -0.71
VPS4A-204ENST00000566354 NTF3P20783 257 aa10.63□□□□□ -0.71
VPS4A-204ENST00000566354 KLF5Q13887 457 aaPredicted RBP10.63□□□□□ -0.71
VPS4A-204ENST00000566354 PMCHL1Q16048 86 aa10.63□□□□□ -0.71
VPS4A-204ENST00000566354 PATE2Q6UY27 113 aa10.63□□□□□ -0.71
VPS4A-204ENST00000566354 NPIPB3Q92617 1050 aa10.63□□□□□ -0.71
VPS4A-204ENST00000566354 AKAP6Q13023 2319 aa10.63□□□□□ -0.71
VPS4A-204ENST00000566354 E7EUB6 86 aa10.63□□□□□ -0.71
VPS4A-204ENST00000566354 HIST1H1EP10412 219 aaKnown RBP10.63□□□□□ -0.71
VPS4A-204ENST00000566354 WT1-ASQ06250 92 aa10.63□□□□□ -0.71
VPS4A-204ENST00000566354 MMDQ15546 238 aa10.63□□□□□ -0.71
VPS4A-204ENST00000566354 STXBP6Q8NFX7 210 aa10.63□□□□□ -0.71
VPS4A-204ENST00000566354 FXYD5Q96DB9 178 aa10.63□□□□□ -0.71
VPS4A-204ENST00000566354 FNDC4Q9H6D8 234 aaPredicted RBP10.63□□□□□ -0.71
VPS4A-204ENST00000566354 SAP30LQ9HAJ7 183 aa10.63□□□□□ -0.71
VPS4A-204ENST00000566354 HSBP1O75506 76 aa10.62□□□□□ -0.71
VPS4A-204ENST00000566354 TOX4O94842 621 aa10.62□□□□□ -0.71
VPS4A-204ENST00000566354 S100A7P31151 101 aa10.62□□□□□ -0.71
VPS4A-204ENST00000566354 LGALS7P47929 136 aa10.62□□□□□ -0.71
VPS4A-204ENST00000566354 SSBP2P81877 361 aaPredicted RBP10.62□□□□□ -0.71
VPS4A-204ENST00000566354 LDLRAD2Q5SZI1 272 aa10.62□□□□□ -0.71
VPS4A-204ENST00000566354 Q6ZN92 141 aa10.62□□□□□ -0.71
VPS4A-204ENST00000566354 PDPNQ86YL7 162 aa10.62□□□□□ -0.71
VPS4A-204ENST00000566354 THAP8Q8NA92 274 aa10.62□□□□□ -0.71
VPS4A-204ENST00000566354 PGPEP1Q9NXJ5 209 aa10.62□□□□□ -0.71
VPS4A-204ENST00000566354 DYSFO75923 2080 aa10.62□□□□□ -0.71
VPS4A-204ENST00000566354 IGKV1D-37A0A075B6S9 117 aa10.62□□□□□ -0.71
VPS4A-204ENST00000566354 TRAV34A0A0B4J273 112 aa10.62□□□□□ -0.71
VPS4A-204ENST00000566354 OR2J3O76001 311 aa10.62□□□□□ -0.71
VPS4A-204ENST00000566354 FSTL3O95633 263 aa10.62□□□□□ -0.71
VPS4A-204ENST00000566354 TNFRSF1AP19438 455 aa10.62□□□□□ -0.71
VPS4A-204ENST00000566354 MYCNOSP40205 109 aa10.62□□□□□ -0.71
VPS4A-204ENST00000566354 TNXAQ16473 311 aa10.62□□□□□ -0.71
VPS4A-204ENST00000566354 ATP5L2Q7Z4Y8 100 aa10.62□□□□□ -0.71
VPS4A-204ENST00000566354 WNT10AQ9GZT5 417 aa10.62□□□□□ -0.71
VPS4A-204ENST00000566354 HNRNPA3P51991 378 aaKnown RBP10.61□□□□□ -0.71
VPS4A-204ENST00000566354 CCL8P80075 99 aa10.61□□□□□ -0.71
VPS4A-204ENST00000566354 ZNF672Q499Z4 452 aaPredicted RBP10.61□□□□□ -0.71
VPS4A-204ENST00000566354 GDF5OSQ5U4N7 250 aa10.61□□□□□ -0.71
VPS4A-204ENST00000566354 FAM71F2Q6NXP2 309 aa10.61□□□□□ -0.71
VPS4A-204ENST00000566354 SSBP4Q9BWG4 385 aaPredicted RBP10.61□□□□□ -0.71
VPS4A-204ENST00000566354 CLEC7AQ9BXN2 247 aa10.61□□□□□ -0.71
VPS4A-204ENST00000566354 LAMTOR2Q9Y2Q5 125 aa10.61□□□□□ -0.71
VPS4A-204ENST00000566354 CRYBG3Q68DQ2 2970 aa10.61□□□□□ -0.71
VPS4A-204ENST00000566354 CGB1A6NKQ9 187 aa10.61□□□□□ -0.71
VPS4A-204ENST00000566354 C17orf100A8MU93 164 aa10.61□□□□□ -0.71
VPS4A-204ENST00000566354 HIGD1CA8MV81 97 aa10.61□□□□□ -0.71
VPS4A-204ENST00000566354 M0QZ24 198 aa10.61□□□□□ -0.71
VPS4A-204ENST00000566354 UBE2G1P62253 170 aa10.61□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms