RNA–Protein interactions for RNA: ENST00000564353.5

CLK3-215, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 2,847 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-215ENST00000564353 GOSR1O95249 250 aa10.79□□□□□ -0.68
CLK3-215ENST00000564353 APCSP02743 223 aa10.79□□□□□ -0.68
CLK3-215ENST00000564353 ZNF137PP52743 207 aa10.79□□□□□ -0.68
CLK3-215ENST00000564353 FOXA3P55318 350 aaPredicted RBP10.79□□□□□ -0.68
CLK3-215ENST00000564353 UBE2G1P62253 170 aa10.79□□□□□ -0.68
CLK3-215ENST00000564353 TMEM155Q4W5P6 130 aa10.79□□□□□ -0.68
CLK3-215ENST00000564353 VSTM2AQ8TAG5 236 aa10.79□□□□□ -0.68
CLK3-215ENST00000564353 CACNG8Q8WXS5 425 aa10.79□□□□□ -0.68
CLK3-215ENST00000564353 GNB1LQ9BYB4 327 aa10.79□□□□□ -0.68
CLK3-215ENST00000564353 TMEM133Q9H2Q1 129 aa10.79□□□□□ -0.68
CLK3-215ENST00000564353 NRN1Q9NPD7 142 aa10.79□□□□□ -0.68
CLK3-215ENST00000564353 OSTCQ9NRP0 149 aa10.79□□□□□ -0.68
CLK3-215ENST00000564353 IGHV2-26A0A0B4J1V2 119 aa10.79□□□□□ -0.68
CLK3-215ENST00000564353 SUB1P53999 127 aaKnown RBP eCLIP10.79□□□□□ -0.68
CLK3-215ENST00000564353 NUP35Q8NFH5 326 aa10.79□□□□□ -0.68
CLK3-215ENST00000564353 COL25A1Q9BXS0 654 aaPredicted RBP10.79□□□□□ -0.68
CLK3-215ENST00000564353 ZNF331Q9NQX6 463 aaPredicted RBP10.79□□□□□ -0.68
CLK3-215ENST00000564353 ONECUT1Q9UBC0 465 aa10.79□□□□□ -0.68
CLK3-215ENST00000564353 SH2D7A6NKC9 451 aaPredicted RBP10.78□□□□□ -0.68
CLK3-215ENST00000564353 HIGD1CA8MV81 97 aa10.78□□□□□ -0.68
CLK3-215ENST00000564353 FNDC10F2Z333 226 aa10.78□□□□□ -0.68
CLK3-215ENST00000564353 RBP4P02753 201 aa10.78□□□□□ -0.68
CLK3-215ENST00000564353 GPX1P07203 203 aa10.78□□□□□ -0.68
CLK3-215ENST00000564353 RPL27AP46776 148 aaKnown RBP10.78□□□□□ -0.68
CLK3-215ENST00000564353 DLX6P56179 175 aa10.78□□□□□ -0.68
CLK3-215ENST00000564353 RPL19P84098 196 aaKnown RBP10.78□□□□□ -0.68
CLK3-215ENST00000564353 EXOC3-AS1Q8N2X6 119 aa10.78□□□□□ -0.68
CLK3-215ENST00000564353 SCNM1Q9BWG6 230 aa10.78□□□□□ -0.68
CLK3-215ENST00000564353 WNK2Q9Y3S1 2297 aa10.78□□□□□ -0.68
CLK3-215ENST00000564353 SPTBN1Q01082 2364 aaKnown RBP10.78□□□□□ -0.68
CLK3-215ENST00000564353 DIRC3C9JPN6 131 aa10.78□□□□□ -0.68
CLK3-215ENST00000564353 AMY1AP04745 511 aa10.78□□□□□ -0.68
CLK3-215ENST00000564353 COMPP49747 757 aaPredicted RBP10.78□□□□□ -0.68
CLK3-215ENST00000564353 CDSNQ15517 529 aa10.78□□□□□ -0.68
CLK3-215ENST00000564353 VAMP8Q9BV40 100 aa10.78□□□□□ -0.68
CLK3-215ENST00000564353 KIR2DL5BA0A0G2JN68 375 aa10.77□□□□□ -0.68
CLK3-215ENST00000564353 KIR2DL5BA0A0G2JPC4 375 aa10.77□□□□□ -0.68
CLK3-215ENST00000564353 FSTL3O95633 263 aa10.77□□□□□ -0.68
CLK3-215ENST00000564353 RIPPLY3P57055 190 aa10.77□□□□□ -0.68
CLK3-215ENST00000564353 FBLN7Q53RD9 439 aa10.77□□□□□ -0.68
CLK3-215ENST00000564353 LDLRAD2Q5SZI1 272 aa10.77□□□□□ -0.68
CLK3-215ENST00000564353 SPACA3Q8IXA5 215 aa10.77□□□□□ -0.68
CLK3-215ENST00000564353 KIR2DL5AQ8N109 375 aa10.77□□□□□ -0.68
CLK3-215ENST00000564353 PNKDQ8N490 385 aa10.77□□□□□ -0.68
CLK3-215ENST00000564353 OR4C5Q8NGB2 326 aa10.77□□□□□ -0.68
CLK3-215ENST00000564353 MRPL32Q9BYC8 188 aaKnown RBP10.77□□□□□ -0.68
CLK3-215ENST00000564353 LY96Q9Y6Y9 160 aa10.77□□□□□ -0.68
CLK3-215ENST00000564353 SMIM27A0A1W2PRY6 76 aa10.77□□□□□ -0.69
CLK3-215ENST00000564353 WDR73Q6P4I2 378 aa10.77□□□□□ -0.69
CLK3-215ENST00000564353 OR1L4Q8NGR5 311 aa10.77□□□□□ -0.69
CLK3-215ENST00000564353 TP73-AS1Q9UF72 201 aa10.77□□□□□ -0.69
CLK3-215ENST00000564353 SPTAN1Q13813 2472 aaKnown RBP10.76□□□□□ -0.69
CLK3-215ENST00000564353 TNFRSF13BO14836 293 aaPredicted RBP10.76□□□□□ -0.69
CLK3-215ENST00000564353 NBEAP1P0C6P0 100 aa10.76□□□□□ -0.69
CLK3-215ENST00000564353 KLRD1Q13241 179 aa10.76□□□□□ -0.69
CLK3-215ENST00000564353 RNASEKQ6P5S7 137 aaKnown RBP10.76□□□□□ -0.69
CLK3-215ENST00000564353 C17orf77Q96MU5 243 aa10.76□□□□□ -0.69
CLK3-215ENST00000564353 IGHV1-3A0A0C4DH29 117 aa10.76□□□□□ -0.69
CLK3-215ENST00000564353 NDUFB8O95169 186 aa10.76□□□□□ -0.69
CLK3-215ENST00000564353 CNIH1O95406 144 aa10.76□□□□□ -0.69
CLK3-215ENST00000564353 ARF6P62330 175 aa10.76□□□□□ -0.69
CLK3-215ENST00000564353 PAFAH1B2P68402 229 aa10.76□□□□□ -0.69
CLK3-215ENST00000564353 TBR1Q16650 682 aa10.76□□□□□ -0.69
CLK3-215ENST00000564353 PGLYRP4Q96LB8 373 aa10.76□□□□□ -0.69
CLK3-215ENST00000564353 SIGLEC9Q9Y336 463 aa10.76□□□□□ -0.69
CLK3-215ENST00000564353 IGHV3OR16-8A0A075B7F1 116 aa10.76□□□□□ -0.69
CLK3-215ENST00000564353 IZUMO1RA6ND01 250 aa10.76□□□□□ -0.69
CLK3-215ENST00000564353 BCL6BQ8N143 479 aaPredicted RBP10.76□□□□□ -0.69
CLK3-215ENST00000564353 CIARTQ8N365 385 aaPredicted RBP10.76□□□□□ -0.69
CLK3-215ENST00000564353 TSKUQ8WUA8 353 aa10.76□□□□□ -0.69
CLK3-215ENST00000564353 RPEQ96AT9 228 aa10.76□□□□□ -0.69
CLK3-215ENST00000564353 C19orf24Q9BVV8 132 aa10.76□□□□□ -0.69
CLK3-215ENST00000564353 ZNF586Q9NXT0 402 aa10.76□□□□□ -0.69
CLK3-215ENST00000564353 EPDR1Q9UM22 224 aa10.76□□□□□ -0.69
CLK3-215ENST00000564353 CHD8Q9HCK8 2581 aa10.75□□□□□ -0.69
CLK3-215ENST00000564353 PPIAL4CA0A0B4J2A2 164 aa10.75□□□□□ -0.69
CLK3-215ENST00000564353 PPIAL4GP0DN37 164 aa10.75□□□□□ -0.69
CLK3-215ENST00000564353 PSG1P11464 419 aa10.75□□□□□ -0.69
CLK3-215ENST00000564353 Q0VG73 95 aa10.75□□□□□ -0.69
CLK3-215ENST00000564353 MMDQ15546 238 aa10.75□□□□□ -0.69
CLK3-215ENST00000564353 KCNS1Q96KK3 526 aa10.75□□□□□ -0.69
CLK3-215ENST00000564353 IGHV3-23P01764 117 aa10.75□□□□□ -0.69
CLK3-215ENST00000564353 C3orf79P0CE67 100 aa10.75□□□□□ -0.69
CLK3-215ENST00000564353 NHLH1Q02575 133 aa10.75□□□□□ -0.69
CLK3-215ENST00000564353 UBE2V1Q13404 147 aa10.75□□□□□ -0.69
CLK3-215ENST00000564353 PPP1R27Q86WC6 154 aa10.75□□□□□ -0.69
CLK3-215ENST00000564353 MCRIP2Q9BUT9 160 aaKnown RBP10.75□□□□□ -0.69
CLK3-215ENST00000564353 VSTM5A8MXK1 200 aa10.74□□□□□ -0.69
CLK3-215ENST00000564353 HYPMO75409 117 aa10.74□□□□□ -0.69
CLK3-215ENST00000564353 CD3EP07766 207 aa10.74□□□□□ -0.69
CLK3-215ENST00000564353 ZNF138P52744 262 aa10.74□□□□□ -0.69
CLK3-215ENST00000564353 MUC15Q8N387 334 aa10.74□□□□□ -0.69
CLK3-215ENST00000564353 STPG4Q8N801 248 aa10.74□□□□□ -0.69
CLK3-215ENST00000564353 C18orf32Q8TCD1 76 aa10.74□□□□□ -0.69
CLK3-215ENST00000564353 PERPQ96FX8 193 aa10.74□□□□□ -0.69
CLK3-215ENST00000564353 Q9H3A6 140 aa10.74□□□□□ -0.69
CLK3-215ENST00000564353 H0Y8G0 127 aa10.74□□□□□ -0.69
CLK3-215ENST00000564353 BUB1B-PAK6H3BSN5 160 aa10.74□□□□□ -0.69
CLK3-215ENST00000564353 ZNF324O75467 553 aaPredicted RBP10.74□□□□□ -0.69
CLK3-215ENST00000564353 TMEM183BQ1AE95 376 aa10.74□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 24.9 ms