RNA–Protein interactions for RNA: ENST00000563884.1

VPS35-204, Transcript of VPS35, retromer complex component, humanhuman

TSL 2

Gene VPS35, Length 759 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-204ENST00000563884 VAX2Q9UIW0 290 aa3.19□□□□□ -1.9
VPS35-204ENST00000563884 TRAV26-2A0A0B4J265 109 aa3.18□□□□□ -1.9
VPS35-204ENST00000563884 TMEM14DPA8MWL7 114 aa3.18□□□□□ -1.9
VPS35-204ENST00000563884 TAAR5O14804 337 aa3.18□□□□□ -1.9
VPS35-204ENST00000563884 TRAPPC2P0DI81 140 aa3.18□□□□□ -1.9
VPS35-204ENST00000563884 TRAPPC2BP0DI82 140 aa3.18□□□□□ -1.9
VPS35-204ENST00000563884 PSMB3P49720 205 aa3.18□□□□□ -1.9
VPS35-204ENST00000563884 TAS2R60P59551 318 aa3.18□□□□□ -1.9
VPS35-204ENST00000563884 DHODHQ02127 395 aa3.18□□□□□ -1.9
VPS35-204ENST00000563884 SRSF9Q13242 221 aaKnown RBP eCLIP3.18□□□□□ -1.9
VPS35-204ENST00000563884 LAGE3Q14657 143 aa3.18□□□□□ -1.9
VPS35-204ENST00000563884 MRPL23Q16540 153 aaKnown RBP3.18□□□□□ -1.9
VPS35-204ENST00000563884 TIMM50Q3ZCQ8 353 aa3.18□□□□□ -1.9
VPS35-204ENST00000563884 ACSM3Q53FZ2 586 aa3.18□□□□□ -1.9
VPS35-204ENST00000563884 NEGR1Q7Z3B1 354 aa3.18□□□□□ -1.9
VPS35-204ENST00000563884 GPR141Q7Z602 305 aa3.18□□□□□ -1.9
VPS35-204ENST00000563884 VKORC1L1Q8N0U8 176 aa3.18□□□□□ -1.9
VPS35-204ENST00000563884 FAM89BQ8N5H3 189 aa3.18□□□□□ -1.9
VPS35-204ENST00000563884 JAGN1Q8N5M9 183 aa3.18□□□□□ -1.9
VPS35-204ENST00000563884 LINC00612Q8N6U2 182 aa3.18□□□□□ -1.9
VPS35-204ENST00000563884 Q8N976 141 aa3.18□□□□□ -1.9
VPS35-204ENST00000563884 OR1P1Q8NH06 330 aa3.18□□□□□ -1.9
VPS35-204ENST00000563884 OR52E5Q8NH55 327 aa3.18□□□□□ -1.9
VPS35-204ENST00000563884 GPR148Q8TDV2 347 aa3.18□□□□□ -1.9
VPS35-204ENST00000563884 NRBF2Q96F24 287 aa3.18□□□□□ -1.9
VPS35-204ENST00000563884 TMEM56Q96MV1 263 aa3.18□□□□□ -1.9
VPS35-204ENST00000563884 HSD17B10Q99714 261 aaKnown RBP3.18□□□□□ -1.9
VPS35-204ENST00000563884 PDCD1LG2Q9BQ51 273 aa3.18□□□□□ -1.9
VPS35-204ENST00000563884 GINS4Q9BRT9 223 aa3.18□□□□□ -1.9
VPS35-204ENST00000563884 Q9HAA7 133 aa3.18□□□□□ -1.9
VPS35-204ENST00000563884 EFCAB1Q9HAE3 211 aa3.18□□□□□ -1.9
VPS35-204ENST00000563884 NOP10Q9NPE3 64 aaKnown RBP3.18□□□□□ -1.9
VPS35-204ENST00000563884 KLK11Q9UBX7 282 aa3.18□□□□□ -1.9
VPS35-204ENST00000563884 A0A0G2JND7 137 aa3.17□□□□□ -1.9
VPS35-204ENST00000563884 PLAC8L1A1L4L8 177 aa3.17□□□□□ -1.9
VPS35-204ENST00000563884 IBA57-AS1B1ANH7 110 aa3.17□□□□□ -1.9
VPS35-204ENST00000563884 TRDCB7Z8K6 153 aa3.17□□□□□ -1.9
VPS35-204ENST00000563884 BET1O15155 118 aa3.17□□□□□ -1.9
VPS35-204ENST00000563884 PRKYO43930 277 aa3.17□□□□□ -1.9
VPS35-204ENST00000563884 UBBP0CG47 229 aa3.17□□□□□ -1.9
VPS35-204ENST00000563884 DCKP27707 260 aa3.17□□□□□ -1.9
VPS35-204ENST00000563884 ZNF85Q03923 595 aa3.17□□□□□ -1.9
VPS35-204ENST00000563884 SLAQ13239 276 aa3.17□□□□□ -1.9
VPS35-204ENST00000563884 LINC01620Q4KN68 170 aa3.17□□□□□ -1.9
VPS35-204ENST00000563884 OR2B11Q5JQS5 317 aa3.17□□□□□ -1.9
VPS35-204ENST00000563884 GDF5OSQ5U4N7 250 aa3.17□□□□□ -1.9
VPS35-204ENST00000563884 FAM78BQ5VT40 261 aa3.17□□□□□ -1.9
VPS35-204ENST00000563884 KDM4DQ6B0I6 523 aa3.17□□□□□ -1.9
VPS35-204ENST00000563884 CGB2Q6NT52 195 aa3.17□□□□□ -1.9
VPS35-204ENST00000563884 LYPD5Q6UWN5 251 aa3.17□□□□□ -1.9
VPS35-204ENST00000563884 SIGLEC15Q6ZMC9 328 aa3.17□□□□□ -1.9
VPS35-204ENST00000563884 WFDC10BQ8IUB3 73 aa3.17□□□□□ -1.9
VPS35-204ENST00000563884 CDH26Q8IXH8 852 aa3.17□□□□□ -1.9
VPS35-204ENST00000563884 OR1L8Q8NGR8 309 aa3.17□□□□□ -1.9
VPS35-204ENST00000563884 PCNPQ8WW12 178 aaKnown RBP3.17□□□□□ -1.9
VPS35-204ENST00000563884 VSIG2Q96IQ7 327 aa3.17□□□□□ -1.9
VPS35-204ENST00000563884 LINC00052Q96N35 136 aa3.17□□□□□ -1.9
VPS35-204ENST00000563884 FAAP24Q9BTP7 215 aa3.17□□□□□ -1.9
VPS35-204ENST00000563884 PARLQ9H300 379 aa3.17□□□□□ -1.9
VPS35-204ENST00000563884 PLEKHJ1Q9NW61 149 aa3.17□□□□□ -1.9
VPS35-204ENST00000563884 DOK5Q9P104 306 aa3.17□□□□□ -1.9
VPS35-204ENST00000563884 DAPL1A0PJW8 107 aa3.16□□□□□ -1.9
VPS35-204ENST00000563884 A8MU10 97 aa3.16□□□□□ -1.9
VPS35-204ENST00000563884 J3QLW9 94 aa3.16□□□□□ -1.9
VPS35-204ENST00000563884 FABP7O15540 132 aa3.16□□□□□ -1.9
VPS35-204ENST00000563884 BCL2L11O43521 198 aa3.16□□□□□ -1.9
VPS35-204ENST00000563884 DUSP14O95147 198 aaKnown RBP3.16□□□□□ -1.9
VPS35-204ENST00000563884 ZNF19P17023 458 aa3.16□□□□□ -1.9
VPS35-204ENST00000563884 SRIP30626 198 aa3.16□□□□□ -1.9
VPS35-204ENST00000563884 WT1-ASQ06250 92 aa3.16□□□□□ -1.9
VPS35-204ENST00000563884 PPP1R8Q12972 351 aaKnown RBP3.16□□□□□ -1.9
VPS35-204ENST00000563884 PRR4Q16378 134 aa3.16□□□□□ -1.9
VPS35-204ENST00000563884 LINC01556Q5JQF7 62 aa3.16□□□□□ -1.9
VPS35-204ENST00000563884 TMEM236Q5W0B7 351 aa3.16□□□□□ -1.9
VPS35-204ENST00000563884 C16orf54Q6UWD8 224 aa3.16□□□□□ -1.9
VPS35-204ENST00000563884 C6orf201Q7Z4U5 140 aa3.16□□□□□ -1.9
VPS35-204ENST00000563884 MS4A15Q8N5U1 240 aa3.16□□□□□ -1.9
VPS35-204ENST00000563884 NKAIN3Q8N8D7 197 aa3.16□□□□□ -1.9
VPS35-204ENST00000563884 ATP6V0E2Q8NHE4 81 aa3.16□□□□□ -1.9
VPS35-204ENST00000563884 C7orf33Q8WU49 177 aa3.16□□□□□ -1.9
VPS35-204ENST00000563884 TCTEX1D2Q8WW35 142 aa3.16□□□□□ -1.9
VPS35-204ENST00000563884 TMEM230Q96A57 120 aa3.16□□□□□ -1.9
VPS35-204ENST00000563884 C5orf30Q96GV9 206 aa3.16□□□□□ -1.9
VPS35-204ENST00000563884 C4orf36Q96KX1 117 aa3.16□□□□□ -1.9
VPS35-204ENST00000563884 C2orf48Q96LS8 159 aa3.16□□□□□ -1.9
VPS35-204ENST00000563884 LINC01587Q99440 93 aa3.16□□□□□ -1.9
VPS35-204ENST00000563884 TMEM59Q9BXS4 323 aa3.16□□□□□ -1.9
VPS35-204ENST00000563884 GSN-AS1Q9NRJ2 163 aa3.16□□□□□ -1.9
VPS35-204ENST00000563884 RPRMQ9NS64 109 aa3.16□□□□□ -1.9
VPS35-204ENST00000563884 FGFR1OP2Q9NVK5 253 aa3.16□□□□□ -1.9
VPS35-204ENST00000563884 ELF5Q9UKW6 265 aaPredicted RBP3.16□□□□□ -1.9
VPS35-204ENST00000563884 TRGV2A0A075B6R0 118 aa3.15□□□□□ -1.91
VPS35-204ENST00000563884 TRBV6-7A0A0A0MS04 114 aa3.15□□□□□ -1.91
VPS35-204ENST00000563884 TRAV8-3A0A0A6YYJ7 113 aa3.15□□□□□ -1.91
VPS35-204ENST00000563884 IGHV3-38A0A0C4DH36 116 aa3.15□□□□□ -1.91
VPS35-204ENST00000563884 A0A0J9YX75 114 aa3.15□□□□□ -1.91
VPS35-204ENST00000563884 FAM231BA6NCW3 169 aa3.15□□□□□ -1.91
VPS35-204ENST00000563884 A8MTW9 85 aa3.15□□□□□ -1.91
VPS35-204ENST00000563884 I3L2K1 104 aa3.15□□□□□ -1.91
VPS35-204ENST00000563884 GNGT2O14610 69 aa3.15□□□□□ -1.91
Retrieved 100 of 20,778 RNA–protein pairs in 35.2 ms