RNA–Protein interactions for RNA: ENST00000562258.5

VPS39-205, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 2

Gene VPS39, Length 4,160 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-205ENST00000562258 SPTBN5Q9NRC6 3674 aaKnown RBP7.37□□□□□ -1.23
VPS39-205ENST00000562258 ITGB1BP1O14713 200 aa7.37□□□□□ -1.23
VPS39-205ENST00000562258 RPLP1P05386 114 aaKnown RBP7.37□□□□□ -1.23
VPS39-205ENST00000562258 RNASE2P10153 161 aaKnown RBP7.37□□□□□ -1.23
VPS39-205ENST00000562258 FXYD7P58549 80 aa7.37□□□□□ -1.23
VPS39-205ENST00000562258 C8orf86Q6ZUL3 223 aa7.37□□□□□ -1.23
VPS39-205ENST00000562258 RIPPLY3P57055 190 aa7.37□□□□□ -1.23
VPS39-205ENST00000562258 C11orf71Q6IPW1 123 aa7.37□□□□□ -1.23
VPS39-205ENST00000562258 COMMD1Q8N668 190 aa7.37□□□□□ -1.23
VPS39-205ENST00000562258 LRTM2Q8N967 370 aa7.37□□□□□ -1.23
VPS39-205ENST00000562258 ISOC2Q96AB3 205 aa7.37□□□□□ -1.23
VPS39-205ENST00000562258 LINC01587Q99440 93 aa7.37□□□□□ -1.23
VPS39-205ENST00000562258 NCOR1P1Q9H4R4 102 aa7.37□□□□□ -1.23
VPS39-205ENST00000562258 DGAT2L7PQ6IED9 249 aa7.36□□□□□ -1.23
VPS39-205ENST00000562258 TMEM116Q8NCL8 245 aa7.36□□□□□ -1.23
VPS39-205ENST00000562258 USMG5Q96IX5 58 aa7.36□□□□□ -1.23
VPS39-205ENST00000562258 UBE2E2Q96LR5 201 aa7.36□□□□□ -1.23
VPS39-205ENST00000562258 ZNF705FA8MVS1 300 aaPredicted RBP7.36□□□□□ -1.23
VPS39-205ENST00000562258 ZNF705DP0CH99 300 aaPredicted RBP7.36□□□□□ -1.23
VPS39-205ENST00000562258 ZNF705BP0CI00 300 aaPredicted RBP7.36□□□□□ -1.23
VPS39-205ENST00000562258 C2orf83Q53S99 150 aa7.36□□□□□ -1.23
VPS39-205ENST00000562258 FAM159AQ6UWV7 190 aa7.36□□□□□ -1.23
VPS39-205ENST00000562258 MRAPQ8TCY5 172 aa7.36□□□□□ -1.23
VPS39-205ENST00000562258 NKX6-2Q9C056 277 aaPredicted RBP7.36□□□□□ -1.23
VPS39-205ENST00000562258 WDR83OSQ9Y284 106 aa7.36□□□□□ -1.23
VPS39-205ENST00000562258 OR4C46A6NHA9 309 aa7.36□□□□□ -1.23
VPS39-205ENST00000562258 SEC14L6B5MCN3 397 aa7.36□□□□□ -1.23
VPS39-205ENST00000562258 FCN3O75636 299 aa7.36□□□□□ -1.23
VPS39-205ENST00000562258 GNG5P63218 68 aa7.36□□□□□ -1.23
VPS39-205ENST00000562258 PVRIGQ6DKI7 326 aa7.36□□□□□ -1.23
VPS39-205ENST00000562258 GGACTQ9BVM4 153 aa7.36□□□□□ -1.23
VPS39-205ENST00000562258 C15orf62A8K5M9 175 aa7.35□□□□□ -1.23
VPS39-205ENST00000562258 TGOLN2O43493 480 aa7.35□□□□□ -1.23
VPS39-205ENST00000562258 ACTL10Q5JWF8 245 aa7.35□□□□□ -1.23
VPS39-205ENST00000562258 FAM71F2Q6NXP2 309 aa7.35□□□□□ -1.23
VPS39-205ENST00000562258 ZNF841Q6ZN19 808 aa7.35□□□□□ -1.23
VPS39-205ENST00000562258 FAM24BQ8N5W8 94 aa7.35□□□□□ -1.23
VPS39-205ENST00000562258 TSPOP30536 169 aa7.35□□□□□ -1.23
VPS39-205ENST00000562258 PSG9Q00887 426 aa7.35□□□□□ -1.23
VPS39-205ENST00000562258 SIRPDQ9H106 197 aa7.35□□□□□ -1.23
VPS39-205ENST00000562258 VSIRQ9H7M9 311 aa7.35□□□□□ -1.23
VPS39-205ENST00000562258 MUC3AQ02505 3323 aa7.35□□□□□ -1.23
VPS39-205ENST00000562258 GRIFINA4D1Z8 144 aa7.35□□□□□ -1.23
VPS39-205ENST00000562258 IGLV1-47P01700 117 aa7.35□□□□□ -1.23
VPS39-205ENST00000562258 FABP4P15090 132 aa7.35□□□□□ -1.23
VPS39-205ENST00000562258 RAB5AP20339 215 aa7.35□□□□□ -1.23
VPS39-205ENST00000562258 SPATA31B1PQ5VZV4 182 aa7.35□□□□□ -1.23
VPS39-205ENST00000562258 LYPD6Q86Y78 171 aa7.35□□□□□ -1.23
VPS39-205ENST00000562258 SGMS2Q8NHU3 365 aa7.35□□□□□ -1.23
VPS39-205ENST00000562258 HSPB9Q9BQS6 159 aa7.35□□□□□ -1.23
VPS39-205ENST00000562258 PHLDA3Q9Y5J5 127 aa7.35□□□□□ -1.23
VPS39-205ENST00000562258 UNC79Q9P2D8 2635 aa7.35□□□□□ -1.23
VPS39-205ENST00000562258 TMEM189A5PLL7 270 aa7.34□□□□□ -1.23
VPS39-205ENST00000562258 FGF16O43320 207 aa7.34□□□□□ -1.23
VPS39-205ENST00000562258 PDE6DO43924 150 aa7.34□□□□□ -1.23
VPS39-205ENST00000562258 FBLN7Q53RD9 439 aa7.34□□□□□ -1.23
VPS39-205ENST00000562258 LRRC75A-AS1Q8N1F1 130 aa7.34□□□□□ -1.23
VPS39-205ENST00000562258 EXOC3-AS1Q8N2X6 119 aa7.34□□□□□ -1.23
VPS39-205ENST00000562258 GGTLC1Q9BX51 225 aa7.34□□□□□ -1.23
VPS39-205ENST00000562258 SLC25A39Q9BZJ4 359 aaPredicted RBP7.34□□□□□ -1.23
VPS39-205ENST00000562258 SEPSECSQ9HD40 501 aaKnown RBP7.34□□□□□ -1.23
VPS39-205ENST00000562258 ZNF98A6NK75 572 aa7.34□□□□□ -1.23
VPS39-205ENST00000562258 CLDN34H7C241 214 aa7.34□□□□□ -1.23
VPS39-205ENST00000562258 M0R3E3 92 aa7.34□□□□□ -1.23
VPS39-205ENST00000562258 NMBP08949 121 aa7.34□□□□□ -1.23
VPS39-205ENST00000562258 MDKP21741 143 aaPredicted RBP7.34□□□□□ -1.23
VPS39-205ENST00000562258 CFPP27918 469 aa7.34□□□□□ -1.23
VPS39-205ENST00000562258 RNASE4P34096 147 aaKnown RBP7.34□□□□□ -1.23
VPS39-205ENST00000562258 ATP5G3P48201 142 aa7.34□□□□□ -1.23
VPS39-205ENST00000562258 SIGLEC15Q6ZMC9 328 aa7.34□□□□□ -1.23
VPS39-205ENST00000562258 Q6ZSR3 168 aa7.34□□□□□ -1.23
VPS39-205ENST00000562258 COL6A5A8TX70 2615 aa7.34□□□□□ -1.23
VPS39-205ENST00000562258 TRBV7-1A0A0A6YYK4 115 aa7.34□□□□□ -1.23
VPS39-205ENST00000562258 H3BQ15 152 aa7.34□□□□□ -1.23
VPS39-205ENST00000562258 M0R381 172 aa7.34□□□□□ -1.23
VPS39-205ENST00000562258 TMEM50AO95807 157 aa7.34□□□□□ -1.23
VPS39-205ENST00000562258 DEFB131AP59861 70 aa7.34□□□□□ -1.23
VPS39-205ENST00000562258 FOXL1Q12952 345 aa7.34□□□□□ -1.23
VPS39-205ENST00000562258 TCTEX1D4Q5JR98 221 aa7.34□□□□□ -1.23
VPS39-205ENST00000562258 SPSB3Q6PJ21 355 aa7.34□□□□□ -1.23
VPS39-205ENST00000562258 MRPL32Q9BYC8 188 aaKnown RBP7.34□□□□□ -1.23
VPS39-205ENST00000562258 Q9H3A6 140 aa7.34□□□□□ -1.23
VPS39-205ENST00000562258 NDUFA4L2Q9NRX3 87 aa7.34□□□□□ -1.23
VPS39-205ENST00000562258 TEX15Q9BXT5 2789 aa7.34□□□□□ -1.23
VPS39-205ENST00000562258 DSCAML1Q8TD84 2053 aa7.34□□□□□ -1.23
VPS39-205ENST00000562258 GCGP01275 180 aa7.34□□□□□ -1.24
VPS39-205ENST00000562258 DYNAPQ8N1N2 210 aa7.34□□□□□ -1.24
VPS39-205ENST00000562258 C19orf24Q9BVV8 132 aa7.34□□□□□ -1.24
VPS39-205ENST00000562258 KLK15Q9H2R5 256 aa7.34□□□□□ -1.24
VPS39-205ENST00000562258 WFDC1Q9HC57 220 aa7.34□□□□□ -1.24
VPS39-205ENST00000562258 DAZ1Q9NQZ3 744 aaKnown RBP7.34□□□□□ -1.24
VPS39-205ENST00000562258 NAT8Q9UHE5 227 aa7.34□□□□□ -1.24
VPS39-205ENST00000562258 OVOL1O14753 267 aa7.33□□□□□ -1.24
VPS39-205ENST00000562258 ASCL2Q99929 193 aa7.33□□□□□ -1.24
VPS39-205ENST00000562258 TMEM14BQ9NUH8 114 aa7.33□□□□□ -1.24
VPS39-205ENST00000562258 DNAJC9-AS1A6NH13 148 aa7.33□□□□□ -1.24
VPS39-205ENST00000562258 CBY3A6NI87 242 aa7.33□□□□□ -1.24
VPS39-205ENST00000562258 PPIFP30405 207 aaKnown RBP7.33□□□□□ -1.24
VPS39-205ENST00000562258 AARDQ4LEZ3 155 aa7.33□□□□□ -1.24
VPS39-205ENST00000562258 HAPLN4Q86UW8 402 aa7.33□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 43.6 ms