RNA–Protein interactions for RNA: ENST00000559257.5

USP3-211, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5

Gene USP3, Length 2,217 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-211ENST00000559257 PRDX1Q06830 199 aaKnown RBP6.79□□□□□ -1.32
USP3-211ENST00000559257 FAM53BQ14153 422 aa6.79□□□□□ -1.32
USP3-211ENST00000559257 MDS2Q8NDY4 140 aa6.79□□□□□ -1.32
USP3-211ENST00000559257 TMEM52Q8NDY8 209 aa6.79□□□□□ -1.32
USP3-211ENST00000559257 PRRG4Q9BZD6 226 aa6.79□□□□□ -1.32
USP3-211ENST00000559257 ZMAT4Q9H898 229 aa6.79□□□□□ -1.32
USP3-211ENST00000559257 TMEM167BQ9NRX6 74 aa6.79□□□□□ -1.32
USP3-211ENST00000559257 TMEM74BQ9NUR3 256 aa6.79□□□□□ -1.32
USP3-211ENST00000559257 SLC25A10Q9UBX3 287 aaPredicted RBP6.79□□□□□ -1.32
USP3-211ENST00000559257 LOC105378220A0A1B0GUY1 285 aaPredicted RBP6.78□□□□□ -1.32
USP3-211ENST00000559257 J3QQQ9 107 aa6.78□□□□□ -1.32
USP3-211ENST00000559257 DPM2O94777 84 aa6.78□□□□□ -1.32
USP3-211ENST00000559257 OXTP01178 125 aa6.78□□□□□ -1.32
USP3-211ENST00000559257 LGALS1P09382 135 aaKnown RBP6.78□□□□□ -1.32
USP3-211ENST00000559257 DEFA4P12838 97 aa6.78□□□□□ -1.32
USP3-211ENST00000559257 CT83Q5H943 113 aa6.78□□□□□ -1.32
USP3-211ENST00000559257 OR8A1Q8NGG7 326 aa6.78□□□□□ -1.32
USP3-211ENST00000559257 FAM168AQ92567 244 aa6.78□□□□□ -1.32
USP3-211ENST00000559257 LINC01548A6NM66 108 aa6.78□□□□□ -1.32
USP3-211ENST00000559257 APOHP02749 345 aaPredicted RBP6.78□□□□□ -1.32
USP3-211ENST00000559257 CD3EP07766 207 aa6.78□□□□□ -1.32
USP3-211ENST00000559257 NBL1P41271 181 aa6.78□□□□□ -1.32
USP3-211ENST00000559257 LINC01559Q495D7 138 aa6.78□□□□□ -1.32
USP3-211ENST00000559257 C22orf39Q6P5X5 142 aa6.78□□□□□ -1.32
USP3-211ENST00000559257 RPS19BP1Q86WX3 136 aaKnown RBP6.78□□□□□ -1.32
USP3-211ENST00000559257 TRGV9Q99603 122 aa6.78□□□□□ -1.32
USP3-211ENST00000559257 MPDZO75970 2070 aa6.77□□□□□ -1.32
USP3-211ENST00000559257 FRG2CA6NGY1 282 aa6.77□□□□□ -1.33
USP3-211ENST00000559257 H0YIG0 161 aa6.77□□□□□ -1.33
USP3-211ENST00000559257 CDX4O14627 284 aaPredicted RBP6.77□□□□□ -1.33
USP3-211ENST00000559257 PRDX2P32119 198 aa6.77□□□□□ -1.33
USP3-211ENST00000559257 PFN2P35080 140 aa6.77□□□□□ -1.33
USP3-211ENST00000559257 PCSK4Q6UW60 755 aa6.77□□□□□ -1.33
USP3-211ENST00000559257 RSPO2Q6UXX9 243 aaPredicted RBP6.77□□□□□ -1.33
USP3-211ENST00000559257 PRIMA1Q86XR5 153 aa6.77□□□□□ -1.33
USP3-211ENST00000559257 SFTPA2Q8IWL1 248 aa6.77□□□□□ -1.33
USP3-211ENST00000559257 SFTPA1Q8IWL2 248 aa6.77□□□□□ -1.33
USP3-211ENST00000559257 Q8N1Y9 231 aa6.77□□□□□ -1.33
USP3-211ENST00000559257 EXOC3-AS1Q8N2X6 119 aa6.77□□□□□ -1.33
USP3-211ENST00000559257 ZNF441Q8N8Z8 693 aa6.77□□□□□ -1.33
USP3-211ENST00000559257 HIST1H4GQ99525 98 aa6.77□□□□□ -1.33
USP3-211ENST00000559257 ZNF355PQ9NSJ1 428 aa6.77□□□□□ -1.33
USP3-211ENST00000559257 STARD5Q9NSY2 213 aa6.77□□□□□ -1.33
USP3-211ENST00000559257 FAM90A23PA8MXZ1 464 aa6.77□□□□□ -1.33
USP3-211ENST00000559257 C4orf51C9J302 202 aa6.77□□□□□ -1.33
USP3-211ENST00000559257 KLK10O43240 276 aa6.77□□□□□ -1.33
USP3-211ENST00000559257 SLC25A20O43772 301 aa6.77□□□□□ -1.33
USP3-211ENST00000559257 ZIC3O60481 467 aa6.77□□□□□ -1.33
USP3-211ENST00000559257 ZFAND5O76080 213 aa6.77□□□□□ -1.33
USP3-211ENST00000559257 IGKV1-5P01602 117 aa6.77□□□□□ -1.33
USP3-211ENST00000559257 FAM90A15PP0C7V4 464 aa6.77□□□□□ -1.33
USP3-211ENST00000559257 FAM90A13PP0C7W8 464 aa6.77□□□□□ -1.33
USP3-211ENST00000559257 FAM90A14PP0C7W9 464 aa6.77□□□□□ -1.33
USP3-211ENST00000559257 FAM90A24PP0C7X0 464 aa6.77□□□□□ -1.33
USP3-211ENST00000559257 Q71RC1 249 aaPredicted RBP6.77□□□□□ -1.33
USP3-211ENST00000559257 GFRA4Q9GZZ7 299 aa6.77□□□□□ -1.33
USP3-211ENST00000559257 FREM3P0C091 2139 aa6.77□□□□□ -1.33
USP3-211ENST00000559257 KIAA1549LQ6ZVL6 1849 aa6.77□□□□□ -1.33
USP3-211ENST00000559257 IGHV3OR15-7A0A075B7D8 119 aa6.76□□□□□ -1.33
USP3-211ENST00000559257 A0A096LNJ9 63 aa6.76□□□□□ -1.33
USP3-211ENST00000559257 IGKV2D-26A0A0A0MRZ7 120 aa6.76□□□□□ -1.33
USP3-211ENST00000559257 FAM236DA0A1B0GTK5 79 aa6.76□□□□□ -1.33
USP3-211ENST00000559257 TCL1BO95988 128 aa6.76□□□□□ -1.33
USP3-211ENST00000559257 IGKV1-39P01597 117 aa6.76□□□□□ -1.33
USP3-211ENST00000559257 IGKCP01834 107 aa6.76□□□□□ -1.33
USP3-211ENST00000559257 IGKV1D-39P04432 117 aa6.76□□□□□ -1.33
USP3-211ENST00000559257 FAM236CP0DP71 79 aa6.76□□□□□ -1.33
USP3-211ENST00000559257 EDDM3BP56851 147 aa6.76□□□□□ -1.33
USP3-211ENST00000559257 SLC25A48Q6ZT89 311 aaKnown RBP6.76□□□□□ -1.33
USP3-211ENST00000559257 IFI27L1Q96BM0 104 aa6.76□□□□□ -1.33
USP3-211ENST00000559257 CCL28Q9NRJ3 127 aa6.76□□□□□ -1.33
USP3-211ENST00000559257 TRGV11A0A075B6L2 103 aa6.76□□□□□ -1.33
USP3-211ENST00000559257 IGKV1D-13A0A0B4J2D9 117 aa6.76□□□□□ -1.33
USP3-211ENST00000559257 C19orf71A6NCJ1 209 aa6.76□□□□□ -1.33
USP3-211ENST00000559257 ZNF785A8K8V0 405 aa6.76□□□□□ -1.33
USP3-211ENST00000559257 LGALS9O00182 355 aa6.76□□□□□ -1.33
USP3-211ENST00000559257 ACTL6BO94805 426 aa6.76□□□□□ -1.33
USP3-211ENST00000559257 IGKV1-13P0DP09 117 aa6.76□□□□□ -1.33
USP3-211ENST00000559257 UBE2D1P51668 147 aa6.76□□□□□ -1.33
USP3-211ENST00000559257 Q6ZSR3 168 aa6.76□□□□□ -1.33
USP3-211ENST00000559257 FAM214BQ7L5A3 538 aa6.76□□□□□ -1.33
USP3-211ENST00000559257 NT5CQ8TCD5 201 aa6.76□□□□□ -1.33
USP3-211ENST00000559257 ZNF503Q96F45 646 aa6.76□□□□□ -1.33
USP3-211ENST00000559257 C2orf48Q96LS8 159 aa6.76□□□□□ -1.33
USP3-211ENST00000559257 HHLA3Q9XRX5 114 aa6.76□□□□□ -1.33
USP3-211ENST00000559257 SHANK1Q9Y566 2161 aa6.76□□□□□ -1.33
USP3-211ENST00000559257 TRAV13-1A0A0B4J241 112 aa6.75□□□□□ -1.33
USP3-211ENST00000559257 LOC107984156A0A0G2JMH3 177 aa6.75□□□□□ -1.33
USP3-211ENST00000559257 TMEM89A2RUT3 159 aa6.75□□□□□ -1.33
USP3-211ENST00000559257 MS4A18H0YCH9 400 aa6.75□□□□□ -1.33
USP3-211ENST00000559257 HBDP02042 147 aa6.75□□□□□ -1.33
USP3-211ENST00000559257 CT62P0C5K7 136 aa6.75□□□□□ -1.33
USP3-211ENST00000559257 PSMB8P28062 276 aa6.75□□□□□ -1.33
USP3-211ENST00000559257 ZNF138P52744 262 aa6.75□□□□□ -1.33
USP3-211ENST00000559257 ARL17AQ8IVW1 177 aa6.75□□□□□ -1.33
USP3-211ENST00000559257 FAM19A4Q96LR4 140 aa6.75□□□□□ -1.33
USP3-211ENST00000559257 GPHA2Q96T91 129 aa6.75□□□□□ -1.33
USP3-211ENST00000559257 OCIAD1Q9NX40 245 aa6.75□□□□□ -1.33
USP3-211ENST00000559257 TMSB15BA0A087X1C1 80 aa6.74□□□□□ -1.33
USP3-211ENST00000559257 A8MZ25 164 aa6.74□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 40.9 ms