RNA–Protein interactions for RNA: ENST00000558518.5

LDLR-208, Transcript of low density lipoprotein receptor, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LDLR, Length 3,617 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-208ENST00000558518 FDCSPQ8NFU4 85 aa9.16□□□□□ -0.94
LDLR-208ENST00000558518 GPR82Q96P67 336 aa9.16□□□□□ -0.94
LDLR-208ENST00000558518 Q9H3A6 140 aa9.16□□□□□ -0.94
LDLR-208ENST00000558518 PTPRBP23467 1997 aa9.15□□□□□ -0.94
LDLR-208ENST00000558518 NCR2O95944 276 aa9.15□□□□□ -0.94
LDLR-208ENST00000558518 AP5S1Q9NUS5 200 aa9.15□□□□□ -0.94
LDLR-208ENST00000558518 RNF7Q9UBF6 113 aa9.15□□□□□ -0.94
LDLR-208ENST00000558518 ARMS2P0C7Q2 107 aa9.15□□□□□ -0.94
LDLR-208ENST00000558518 LRRC10Q5BKY1 277 aa9.15□□□□□ -0.94
LDLR-208ENST00000558518 PNKDQ8N490 385 aa9.15□□□□□ -0.94
LDLR-208ENST00000558518 DDB2Q92466 427 aa9.15□□□□□ -0.94
LDLR-208ENST00000558518 PCSK5Q92824 1860 aa9.15□□□□□ -0.94
LDLR-208ENST00000558518 SMKR1H3BMG3 65 aa9.14□□□□□ -0.95
LDLR-208ENST00000558518 FCER1GP30273 86 aa9.14□□□□□ -0.95
LDLR-208ENST00000558518 GUSBP1Q15486 140 aa9.14□□□□□ -0.95
LDLR-208ENST00000558518 MBD6Q96DN6 1003 aa9.14□□□□□ -0.95
LDLR-208ENST00000558518 RITA1Q96K30 269 aa9.14□□□□□ -0.95
LDLR-208ENST00000558518 CHODLQ9H9P2 273 aa9.14□□□□□ -0.95
LDLR-208ENST00000558518 TOMM40O96008 361 aa9.14□□□□□ -0.95
LDLR-208ENST00000558518 CFHR2P36980 270 aa9.14□□□□□ -0.95
LDLR-208ENST00000558518 SUB1P53999 127 aaKnown RBP eCLIP9.14□□□□□ -0.959e-7■■■□□ 17.7
LDLR-208ENST00000558518 MTURNQ8N3F0 131 aa9.14□□□□□ -0.95
LDLR-208ENST00000558518 TTTY13Q9BZ97 58 aa9.14□□□□□ -0.95
LDLR-208ENST00000558518 C21orf140B9A014 251 aa9.14□□□□□ -0.95
LDLR-208ENST00000558518 MZT1Q08AG7 82 aa9.14□□□□□ -0.95
LDLR-208ENST00000558518 TECTAO75443 2155 aa9.14□□□□□ -0.95
LDLR-208ENST00000558518 IGKV3-15P01624 115 aa9.13□□□□□ -0.95
LDLR-208ENST00000558518 CNTFRP26992 372 aa9.13□□□□□ -0.95
LDLR-208ENST00000558518 CACNG7P62955 275 aa9.13□□□□□ -0.95
LDLR-208ENST00000558518 FXYD5Q96DB9 178 aa9.13□□□□□ -0.95
LDLR-208ENST00000558518 PERPQ96FX8 193 aa9.13□□□□□ -0.95
LDLR-208ENST00000558518 ADTRPQ96IZ2 230 aa9.13□□□□□ -0.95
LDLR-208ENST00000558518 ZPBPQ9BS86 351 aa9.13□□□□□ -0.95
LDLR-208ENST00000558518 RPUSD1Q9UJJ7 312 aaKnown RBP9.13□□□□□ -0.95
LDLR-208ENST00000558518 CREBBPQ92793 2442 aa9.13□□□□□ -0.95
LDLR-208ENST00000558518 NOTCH3Q9UM47 2321 aa9.13□□□□□ -0.95
LDLR-208ENST00000558518 LIPFP07098 398 aa9.13□□□□□ -0.95
LDLR-208ENST00000558518 COX7A1P24310 79 aa9.13□□□□□ -0.95
LDLR-208ENST00000558518 FAM27E3Q08E93 113 aa9.13□□□□□ -0.95
LDLR-208ENST00000558518 MDS2Q8NDY4 140 aa9.13□□□□□ -0.95
LDLR-208ENST00000558518 C17orf77Q96MU5 243 aa9.13□□□□□ -0.95
LDLR-208ENST00000558518 ST20Q9HBF5 79 aa9.13□□□□□ -0.95
LDLR-208ENST00000558518 K7EP13 123 aa9.13□□□□□ -0.95
LDLR-208ENST00000558518 M0R3E3 92 aa9.13□□□□□ -0.95
LDLR-208ENST00000558518 F2RL2O00254 374 aa9.13□□□□□ -0.95
LDLR-208ENST00000558518 GCSHP23434 173 aa9.13□□□□□ -0.95
LDLR-208ENST00000558518 IFI27P40305 119 aaPredicted RBP9.13□□□□□ -0.95
LDLR-208ENST00000558518 ANKRD39Q53RE8 183 aa9.13□□□□□ -0.95
LDLR-208ENST00000558518 RBPMS2Q6ZRY4 209 aaKnown RBP9.13□□□□□ -0.95
LDLR-208ENST00000558518 TCRBV4S1A1TA0A5B7 111 aa9.12□□□□□ -0.95
LDLR-208ENST00000558518 FAM90A9PA6NNJ1 464 aa9.12□□□□□ -0.95
LDLR-208ENST00000558518 GNG7O60262 68 aa9.12□□□□□ -0.95
LDLR-208ENST00000558518 CNIH1O95406 144 aa9.12□□□□□ -0.95
LDLR-208ENST00000558518 WT1P19544 449 aaPredicted RBP9.12□□□□□ -0.95
LDLR-208ENST00000558518 LOXL1Q08397 574 aaPredicted RBP9.12□□□□□ -0.95
LDLR-208ENST00000558518 DEFB109BQ30KR1 87 aa9.12□□□□□ -0.95
LDLR-208ENST00000558518 C2orf83Q53S99 150 aa9.12□□□□□ -0.95
LDLR-208ENST00000558518 Q5PR19 223 aa9.12□□□□□ -0.95
LDLR-208ENST00000558518 MRPL32Q9BYC8 188 aaKnown RBP9.12□□□□□ -0.95
LDLR-208ENST00000558518 PEF1Q9UBV8 284 aaKnown RBP9.12□□□□□ -0.95
LDLR-208ENST00000558518 HSPB8Q9UJY1 196 aa9.12□□□□□ -0.95
LDLR-208ENST00000558518 IGFL4Q6B9Z1 124 aa9.12□□□□□ -0.95
LDLR-208ENST00000558518 CEP295Q9C0D2 2601 aa9.12□□□□□ -0.95
LDLR-208ENST00000558518 TNFRSF1AP19438 455 aa9.11□□□□□ -0.95
LDLR-208ENST00000558518 TMEM97Q5BJF2 176 aa9.11□□□□□ -0.95
LDLR-208ENST00000558518 C1orf210Q8IVY1 113 aa9.11□□□□□ -0.95
LDLR-208ENST00000558518 ANKRD11Q6UB99 2663 aaPredicted RBP9.11□□□□□ -0.95
LDLR-208ENST00000558518 PPIFP30405 207 aaKnown RBP9.11□□□□□ -0.95
LDLR-208ENST00000558518 DEFB125Q8N687 156 aa9.11□□□□□ -0.95
LDLR-208ENST00000558518 TNRC6BQ9UPQ9 1833 aaKnown RBP9.11□□□□□ -0.95
LDLR-208ENST00000558518 TLN1Q9Y490 2541 aaKnown RBP9.11□□□□□ -0.95
LDLR-208ENST00000558518 LRBAP50851 2863 aa9.11□□□□□ -0.95
LDLR-208ENST00000558518 A0A1W2PPI3 338 aa9.11□□□□□ -0.95
LDLR-208ENST00000558518 TMEM213A2RRL7 107 aa9.11□□□□□ -0.95
LDLR-208ENST00000558518 IGHV3-23P01764 117 aa9.11□□□□□ -0.95
LDLR-208ENST00000558518 CSN1S1P47710 185 aa9.11□□□□□ -0.95
LDLR-208ENST00000558518 ZZEF1O43149 2961 aa9.1□□□□□ -0.95
LDLR-208ENST00000558518 C22orf46C9J442 243 aa9.1□□□□□ -0.95
LDLR-208ENST00000558518 TCRAP04437 139 aa9.1□□□□□ -0.95
LDLR-208ENST00000558518 KLF17Q5JT82 389 aaPredicted RBP9.1□□□□□ -0.95
LDLR-208ENST00000558518 TIMM23BQ5SRD1 257 aa9.1□□□□□ -0.95
LDLR-208ENST00000558518 RABAC1Q9UI14 185 aa9.1□□□□□ -0.95
LDLR-208ENST00000558518 SVEP1Q4LDE5 3571 aa9.1□□□□□ -0.95
LDLR-208ENST00000558518 J3QW42 95 aa9.1□□□□□ -0.95
LDLR-208ENST00000558518 HIST1H1AQ02539 215 aaPredicted RBP9.1□□□□□ -0.95
LDLR-208ENST00000558518 LCNL1Q6ZST4 164 aa9.1□□□□□ -0.95
LDLR-208ENST00000558518 GUCD1Q96NT3 240 aa9.1□□□□□ -0.95
LDLR-208ENST00000558518 GAFA1Q96PS6 74 aa9.1□□□□□ -0.95
LDLR-208ENST00000558518 RAB9BQ9NP90 201 aa9.1□□□□□ -0.95
LDLR-208ENST00000558518 D6R8Y8 96 aa9.1□□□□□ -0.95
LDLR-208ENST00000558518 PLP1P60201 277 aa9.1□□□□□ -0.95
LDLR-208ENST00000558518 SFTA2Q6UW10 78 aa9.1□□□□□ -0.95
LDLR-208ENST00000558518 AMN1Q8IY45 258 aa9.1□□□□□ -0.95
LDLR-208ENST00000558518 C5orf17Q8NAS9 161 aa9.1□□□□□ -0.95
LDLR-208ENST00000558518 OR1N2Q8NGR9 330 aa9.1□□□□□ -0.95
LDLR-208ENST00000558518 ZNF714Q96N38 554 aa9.1□□□□□ -0.95
LDLR-208ENST00000558518 C19orf24Q9BVV8 132 aa9.1□□□□□ -0.95
LDLR-208ENST00000558518 A0A1B0GUT8 65 aa9.09□□□□□ -0.95
LDLR-208ENST00000558518 VMA21Q3ZAQ7 101 aa9.09□□□□□ -0.95
LDLR-208ENST00000558518 PCP2Q8IVA1 136 aa9.09□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 38.6 ms