RNA–Protein interactions for RNA: ENST00000558088.1

VPS13C-205, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 2

Gene VPS13C, Length 549 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-205ENST00000558088 TGIF2-C20orf24A0A0A6YYL0 155 aa-0.53□□□□□ -2.49
VPS13C-205ENST00000558088 OR4C46A6NHA9 309 aa-0.53□□□□□ -2.49
VPS13C-205ENST00000558088 CALUO43852 315 aaPredicted RBP-0.53□□□□□ -2.49
VPS13C-205ENST00000558088 COX5BP10606 129 aa-0.53□□□□□ -2.49
VPS13C-205ENST00000558088 SPCS3P61009 180 aa-0.53□□□□□ -2.49
VPS13C-205ENST00000558088 PSME3P61289 254 aa-0.53□□□□□ -2.49
VPS13C-205ENST00000558088 C8orf74Q6P047 294 aa-0.53□□□□□ -2.49
VPS13C-205ENST00000558088 ANGPTL5Q86XS5 388 aa-0.53□□□□□ -2.49
VPS13C-205ENST00000558088 CNPY4Q8N129 248 aa-0.53□□□□□ -2.49
VPS13C-205ENST00000558088 C19orf60Q96EN9 201 aa-0.53□□□□□ -2.49
VPS13C-205ENST00000558088 RMND5BQ96G75 393 aaPredicted RBP-0.53□□□□□ -2.49
VPS13C-205ENST00000558088 SLC25A21Q9BQT8 299 aaPredicted RBP-0.53□□□□□ -2.49
VPS13C-205ENST00000558088 PROK2Q9HC23 129 aa-0.53□□□□□ -2.49
VPS13C-205ENST00000558088 ABCA2Q9BZC7 2435 aa-0.53□□□□□ -2.49
VPS13C-205ENST00000558088 WNK2Q9Y3S1 2297 aa-0.53□□□□□ -2.49
VPS13C-205ENST00000558088 TTC28Q96AY4 2481 aa-0.54□□□□□ -2.5
VPS13C-205ENST00000558088 TENM4Q6N022 2769 aa-0.54□□□□□ -2.5
VPS13C-205ENST00000558088 ABCC11Q96J66 1382 aa-0.54□□□□□ -2.5
VPS13C-205ENST00000558088 E7EUB6 86 aa-0.54□□□□□ -2.5
VPS13C-205ENST00000558088 RBP1P09455 135 aa-0.54□□□□□ -2.5
VPS13C-205ENST00000558088 CD79AP11912 226 aa-0.54□□□□□ -2.5
VPS13C-205ENST00000558088 DSCR4P56555 118 aaPredicted RBP-0.54□□□□□ -2.5
VPS13C-205ENST00000558088 ALKAL1Q6UXT8 129 aa-0.54□□□□□ -2.5
VPS13C-205ENST00000558088 PDZD9Q8IXQ8 264 aa-0.54□□□□□ -2.5
VPS13C-205ENST00000558088 OR10K1Q8NGX5 313 aa-0.54□□□□□ -2.5
VPS13C-205ENST00000558088 LRRN3E7EW58 273 aa-0.55□□□□□ -2.5
VPS13C-205ENST00000558088 NDUFB3O43676 98 aa-0.55□□□□□ -2.5
VPS13C-205ENST00000558088 OCM2P0CE71 109 aa-0.55□□□□□ -2.5
VPS13C-205ENST00000558088 SMIM10L2AP0DMW4 78 aa-0.55□□□□□ -2.5
VPS13C-205ENST00000558088 SMIM10L2BP0DMW5 78 aa-0.55□□□□□ -2.5
VPS13C-205ENST00000558088 SERPINB9P50453 376 aa-0.55□□□□□ -2.5
VPS13C-205ENST00000558088 CAV3P56539 151 aa-0.55□□□□□ -2.5
VPS13C-205ENST00000558088 RAB5BP61020 215 aa-0.55□□□□□ -2.5
VPS13C-205ENST00000558088 SPINK13Q1W4C9 94 aa-0.55□□□□□ -2.5
VPS13C-205ENST00000558088 C1orf134Q5TEV5 83 aa-0.55□□□□□ -2.5
VPS13C-205ENST00000558088 VMO1Q7Z5L0 202 aa-0.55□□□□□ -2.5
VPS13C-205ENST00000558088 SLC25A40Q8TBP6 338 aa-0.55□□□□□ -2.5
VPS13C-205ENST00000558088 SLC35B4Q969S0 331 aa-0.55□□□□□ -2.5
VPS13C-205ENST00000558088 PLEKHB2Q96CS7 222 aa-0.55□□□□□ -2.5
VPS13C-205ENST00000558088 ADAT3Q96EY9 351 aaPredicted RBP-0.55□□□□□ -2.5
VPS13C-205ENST00000558088 DCUN1D1Q96GG9 259 aa-0.55□□□□□ -2.5
VPS13C-205ENST00000558088 UCK1Q9HA47 277 aa-0.55□□□□□ -2.5
VPS13C-205ENST00000558088 HSPB8Q9UJY1 196 aa-0.55□□□□□ -2.5
VPS13C-205ENST00000558088 FLNAP21333 2647 aaKnown RBP-0.55□□□□□ -2.5
VPS13C-205ENST00000558088 RAD50Q92878 1312 aa-0.56□□□□□ -2.5
VPS13C-205ENST00000558088 ECM29Q5VYK3 1845 aa-0.56□□□□□ -2.5
VPS13C-205ENST00000558088 hCG_1818297A0A087WSY0 165 aa-0.56□□□□□ -2.5
VPS13C-205ENST00000558088 TRGV10A0A0A0MS01 117 aa-0.56□□□□□ -2.5
VPS13C-205ENST00000558088 A8MT66 165 aa-0.56□□□□□ -2.5
VPS13C-205ENST00000558088 A8MWV9 139 aa-0.56□□□□□ -2.5
VPS13C-205ENST00000558088 SLC16A4O15374 487 aa-0.56□□□□□ -2.5
VPS13C-205ENST00000558088 CST8O60676 142 aa-0.56□□□□□ -2.5
VPS13C-205ENST00000558088 DEXIO95424 95 aa-0.56□□□□□ -2.5
VPS13C-205ENST00000558088 OR5G3P0C626 314 aa-0.56□□□□□ -2.5
VPS13C-205ENST00000558088 C8orf88P0DMB2 117 aa-0.56□□□□□ -2.5
VPS13C-205ENST00000558088 HIST1H1TP22492 207 aaPredicted RBP-0.56□□□□□ -2.5
VPS13C-205ENST00000558088 AP2S1P53680 142 aaPredicted RBP-0.56□□□□□ -2.5
VPS13C-205ENST00000558088 HADHBP55084 474 aaKnown RBP-0.56□□□□□ -2.5
VPS13C-205ENST00000558088 RPL37AP61513 92 aaKnown RBP-0.56□□□□□ -2.5
VPS13C-205ENST00000558088 KRR1Q13601 381 aaKnown RBP-0.56□□□□□ -2.5
VPS13C-205ENST00000558088 ASB16-AS1Q495Z4 193 aa-0.56□□□□□ -2.5
VPS13C-205ENST00000558088 CLEC6AQ6EIG7 209 aa-0.56□□□□□ -2.5
VPS13C-205ENST00000558088 S100A7AQ86SG5 101 aa-0.56□□□□□ -2.5
VPS13C-205ENST00000558088 OR51A2Q8NGJ7 313 aa-0.56□□□□□ -2.5
VPS13C-205ENST00000558088 OR10AG1Q8NH19 301 aa-0.56□□□□□ -2.5
VPS13C-205ENST00000558088 OR4K15Q8NH41 348 aa-0.56□□□□□ -2.5
VPS13C-205ENST00000558088 STAG3L4Q8TBR4 150 aa-0.56□□□□□ -2.5
VPS13C-205ENST00000558088 OR52E6Q96RD3 313 aa-0.56□□□□□ -2.5
VPS13C-205ENST00000558088 LINC00467Q9BRT7 94 aa-0.56□□□□□ -2.5
VPS13C-205ENST00000558088 LPAR5Q9H1C0 372 aa-0.56□□□□□ -2.5
VPS13C-205ENST00000558088 MYH10P35580 1976 aa-0.56□□□□□ -2.5
VPS13C-205ENST00000558088 FREM3P0C091 2139 aa-0.56□□□□□ -2.5
VPS13C-205ENST00000558088 ZGRF1Q86YA3 2104 aa-0.56□□□□□ -2.5
VPS13C-205ENST00000558088 MED1Q15648 1581 aaPredicted RBP-0.57□□□□□ -2.5
VPS13C-205ENST00000558088 TRAV26-2A0A0B4J265 109 aa-0.57□□□□□ -2.5
VPS13C-205ENST00000558088 B4DSR2 109 aa-0.57□□□□□ -2.5
VPS13C-205ENST00000558088 SULT1C4O75897 302 aa-0.57□□□□□ -2.5
VPS13C-205ENST00000558088 ROMO1P60602 79 aa-0.57□□□□□ -2.5
VPS13C-205ENST00000558088 MYL5Q02045 173 aa-0.57□□□□□ -2.5
VPS13C-205ENST00000558088 TMED1Q13445 227 aa-0.57□□□□□ -2.5
VPS13C-205ENST00000558088 LYRM7Q5U5X0 104 aa-0.57□□□□□ -2.5
VPS13C-205ENST00000558088 EIF5AL1Q6IS14 154 aaKnown RBP-0.57□□□□□ -2.5
VPS13C-205ENST00000558088 FAM9CQ8IZT9 166 aa-0.57□□□□□ -2.5
VPS13C-205ENST00000558088 ZNF75CPQ92670 426 aaPredicted RBP-0.57□□□□□ -2.5
VPS13C-205ENST00000558088 LIMD2Q9BT23 127 aa-0.57□□□□□ -2.5
VPS13C-205ENST00000558088 MRPS26Q9BYN8 205 aaKnown RBP-0.57□□□□□ -2.5
VPS13C-205ENST00000558088 IMP3Q9NV31 184 aaKnown RBP-0.57□□□□□ -2.5
VPS13C-205ENST00000558088 SRRM2Q9UQ35 2752 aaKnown RBP-0.57□□□□□ -2.5
VPS13C-205ENST00000558088 SCN8AQ9UQD0 1980 aa-0.57□□□□□ -2.5
VPS13C-205ENST00000558088 ASXL3Q9C0F0 2248 aa-0.58□□□□□ -2.5
VPS13C-205ENST00000558088 IQCF5A8MTL0 148 aa-0.58□□□□□ -2.5
VPS13C-205ENST00000558088 HSBP1L1C9JCN9 74 aa-0.58□□□□□ -2.5
VPS13C-205ENST00000558088 C17orf112F2Z3M2 114 aa-0.58□□□□□ -2.5
VPS13C-205ENST00000558088 J3QRK9 145 aa-0.58□□□□□ -2.5
VPS13C-205ENST00000558088 DCTN3O75935 186 aa-0.58□□□□□ -2.5
VPS13C-205ENST00000558088 CALB1P05937 261 aa-0.58□□□□□ -2.5
VPS13C-205ENST00000558088 PSMB6P28072 239 aa-0.58□□□□□ -2.5
VPS13C-205ENST00000558088 AP3S2P59780 193 aa-0.58□□□□□ -2.5
VPS13C-205ENST00000558088 ZNF56Q15929 161 aa-0.58□□□□□ -2.5
VPS13C-205ENST00000558088 OR5AS1Q8N127 324 aa-0.58□□□□□ -2.5
Retrieved 100 of 20,778 RNA–protein pairs in 38.4 ms