RNA–Protein interactions for RNA: ENST00000557005.1

SYNE2-223, Transcript of spectrin repeat containing nuclear envelope protein 2, human

TSL 2

Gene SYNE2, Length 5,804 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SYNE2-223	ENST00000557005	TDRD6	O60522	2096 aa	Known RBP	4.05	□□□□□ -1.76
SYNE2-223	ENST00000557005	TRAV8-4	A0A0B4J246	113 aa		4.05	□□□□□ -1.76
SYNE2-223	ENST00000557005	WNT2	P09544	360 aa		4.05	□□□□□ -1.76
SYNE2-223	ENST00000557005	NPPC	P23582	126 aa		4.05	□□□□□ -1.76
SYNE2-223	ENST00000557005	VWC2	Q2TAL6	325 aa		4.05	□□□□□ -1.76
SYNE2-223	ENST00000557005	GAGE13	Q4V321	117 aa		4.05	□□□□□ -1.76
SYNE2-223	ENST00000557005	AMN1	Q8IY45	258 aa		4.05	□□□□□ -1.76
SYNE2-223	ENST00000557005		Q8TAT8	98 aa		4.05	□□□□□ -1.76
SYNE2-223	ENST00000557005	ARPC1A	Q92747	370 aa		4.05	□□□□□ -1.76
SYNE2-223	ENST00000557005	SCRT2	Q9NQ03	307 aa		4.05	□□□□□ -1.76
SYNE2-223	ENST00000557005		H3BRM9	83 aa		4.05	□□□□□ -1.76
SYNE2-223	ENST00000557005	ARMS2	P0C7Q2	107 aa		4.05	□□□□□ -1.76
SYNE2-223	ENST00000557005	ZNF134	P52741	427 aa		4.05	□□□□□ -1.76
SYNE2-223	ENST00000557005	LAGE3	Q14657	143 aa		4.05	□□□□□ -1.76
SYNE2-223	ENST00000557005	C17orf58	Q2M2W7	97 aa		4.05	□□□□□ -1.76
SYNE2-223	ENST00000557005	RNFT1	Q5M7Z0	435 aa		4.05	□□□□□ -1.76
SYNE2-223	ENST00000557005	TMEM170B	Q5T4T1	132 aa		4.05	□□□□□ -1.76
SYNE2-223	ENST00000557005		Q6ZPA2	131 aa		4.05	□□□□□ -1.76
SYNE2-223	ENST00000557005	IFI27L1	Q96BM0	104 aa		4.05	□□□□□ -1.76
SYNE2-223	ENST00000557005	ZNF479	Q96JC4	524 aa		4.05	□□□□□ -1.76
SYNE2-223	ENST00000557005	PMS2P5	A8MQ11	134 aa		4.04	□□□□□ -1.76
SYNE2-223	ENST00000557005		K7EMI3	77 aa		4.04	□□□□□ -1.76
SYNE2-223	ENST00000557005	ID1	P41134	155 aa		4.04	□□□□□ -1.76
SYNE2-223	ENST00000557005	LY6E	Q16553	131 aa		4.04	□□□□□ -1.76
SYNE2-223	ENST00000557005	LINC01560	Q8TB33	94 aa		4.04	□□□□□ -1.76
SYNE2-223	ENST00000557005	GFRA4	Q9GZZ7	299 aa		4.04	□□□□□ -1.76
SYNE2-223	ENST00000557005	TP73-AS1	Q9UF72	201 aa		4.04	□□□□□ -1.76
SYNE2-223	ENST00000557005	TRAV26-2	A0A0B4J265	109 aa		4.04	□□□□□ -1.76
SYNE2-223	ENST00000557005	IGKV3-20	P01619	116 aa		4.04	□□□□□ -1.76
SYNE2-223	ENST00000557005	ATP5I	P56385	69 aa	Predicted RBP	4.04	□□□□□ -1.76
SYNE2-223	ENST00000557005	KLF5	Q13887	457 aa	Predicted RBP	4.04	□□□□□ -1.76
SYNE2-223	ENST00000557005	EBLN2	Q6P2I7	272 aa		4.04	□□□□□ -1.76
SYNE2-223	ENST00000557005	C1orf162	Q8NEQ5	155 aa	Predicted RBP	4.04	□□□□□ -1.76
SYNE2-223	ENST00000557005	EEF1AKMT3	Q96AZ1	226 aa		4.04	□□□□□ -1.76
SYNE2-223	ENST00000557005	TMEM133	Q9H2Q1	129 aa		4.04	□□□□□ -1.76
SYNE2-223	ENST00000557005	TMEM14B	Q9NUH8	114 aa		4.04	□□□□□ -1.76
SYNE2-223	ENST00000557005	LYNX1	G3V0Z9	82 aa		4.04	□□□□□ -1.76
SYNE2-223	ENST00000557005	C15orf65	H3BRN8	121 aa		4.04	□□□□□ -1.76
SYNE2-223	ENST00000557005	ATP5L	O75964	103 aa		4.04	□□□□□ -1.76
SYNE2-223	ENST00000557005	FAM106CP	P0CH98	169 aa		4.04	□□□□□ -1.76
SYNE2-223	ENST00000557005	LYNX1	P0DP58	116 aa		4.04	□□□□□ -1.76
SYNE2-223	ENST00000557005	ASIP	P42127	132 aa		4.04	□□□□□ -1.76
SYNE2-223	ENST00000557005	RAB9A	P51151	201 aa		4.04	□□□□□ -1.76
SYNE2-223	ENST00000557005	SRSF6	Q13247	344 aa	Known RBP	4.04	□□□□□ -1.76
SYNE2-223	ENST00000557005	TMEM30B	Q3MIR4	351 aa		4.04	□□□□□ -1.76
SYNE2-223	ENST00000557005	RPRML	Q8N4K4	120 aa		4.04	□□□□□ -1.76
SYNE2-223	ENST00000557005	SYT8	Q8NBV8	401 aa		4.04	□□□□□ -1.76
SYNE2-223	ENST00000557005	NEUROG1	Q92886	237 aa		4.04	□□□□□ -1.76
SYNE2-223	ENST00000557005	RNF125	Q96EQ8	232 aa		4.04	□□□□□ -1.76
SYNE2-223	ENST00000557005	MBNL3	Q9NUK0	354 aa	Known RBP	4.04	□□□□□ -1.76
SYNE2-223	ENST00000557005	C2orf16	Q68DN1	1984 aa		4.04	□□□□□ -1.76
SYNE2-223	ENST00000557005	NPIPB5	A8MRT5	1133 aa		4.04	□□□□□ -1.76
SYNE2-223	ENST00000557005	OR11H12	B2RN74	326 aa		4.04	□□□□□ -1.76
SYNE2-223	ENST00000557005	BORCS8-MEF2B	H3BNR1	382 aa	Predicted RBP	4.04	□□□□□ -1.76
SYNE2-223	ENST00000557005	KLRD1	Q13241	179 aa		4.04	□□□□□ -1.76
SYNE2-223	ENST00000557005	TMEM155	Q4W5P6	130 aa		4.04	□□□□□ -1.76
SYNE2-223	ENST00000557005	LYPD2	Q6UXB3	125 aa		4.04	□□□□□ -1.76
SYNE2-223	ENST00000557005	OR11H1	Q8NG94	326 aa		4.04	□□□□□ -1.76
SYNE2-223	ENST00000557005	OR11H2	Q8NH07	326 aa		4.04	□□□□□ -1.76
SYNE2-223	ENST00000557005	ZNF815P	A8K554	130 aa		4.04	□□□□□ -1.76
SYNE2-223	ENST00000557005	HAX1	O00165	279 aa		4.04	□□□□□ -1.76
SYNE2-223	ENST00000557005	NTN3	O00634	580 aa	Predicted RBP	4.04	□□□□□ -1.76
SYNE2-223	ENST00000557005	SP9	P0CG40	484 aa		4.04	□□□□□ -1.76
SYNE2-223	ENST00000557005	SRSF1	Q07955	248 aa	Known RBP eCLIP	4.04	□□□□□ -1.76
SYNE2-223	ENST00000557005		Q6AWC8	147 aa		4.04	□□□□□ -1.76
SYNE2-223	ENST00000557005	SLC25A48	Q6ZT89	311 aa	Known RBP	4.04	□□□□□ -1.76
SYNE2-223	ENST00000557005	TMEM75	Q8N9X5	138 aa		4.04	□□□□□ -1.76
SYNE2-223	ENST00000557005	TSSC4	Q9Y5U2	329 aa	Predicted RBP	4.04	□□□□□ -1.76
SYNE2-223	ENST00000557005	DIAPH2-AS1	Q14236	149 aa		4.03	□□□□□ -1.76
SYNE2-223	ENST00000557005	C1orf122	Q6ZSJ8	110 aa		4.03	□□□□□ -1.76
SYNE2-223	ENST00000557005	TMEM158	Q8WZ71	300 aa		4.03	□□□□□ -1.76
SYNE2-223	ENST00000557005	JMJD8	Q96S16	334 aa		4.03	□□□□□ -1.76
SYNE2-223	ENST00000557005	TPSG1	Q9NRR2	321 aa		4.03	□□□□□ -1.76
SYNE2-223	ENST00000557005	TRAV8-2	A0A0B4J237	113 aa		4.03	□□□□□ -1.76
SYNE2-223	ENST00000557005	OR9G4	Q8NGQ1	327 aa		4.03	□□□□□ -1.76
SYNE2-223	ENST00000557005	TRGV9	Q99603	122 aa		4.03	□□□□□ -1.76
SYNE2-223	ENST00000557005	SAP30	O75446	220 aa		4.03	□□□□□ -1.76
SYNE2-223	ENST00000557005	COX8A	P10176	69 aa		4.03	□□□□□ -1.76
SYNE2-223	ENST00000557005	PRTN3	P24158	256 aa		4.03	□□□□□ -1.76
SYNE2-223	ENST00000557005	COLCA1	Q6ZS62	124 aa		4.03	□□□□□ -1.76
SYNE2-223	ENST00000557005	RNF182	Q8N6D2	247 aa		4.03	□□□□□ -1.76
SYNE2-223	ENST00000557005	FXYD5	Q96DB9	178 aa		4.03	□□□□□ -1.76
SYNE2-223	ENST00000557005	TRAV2	A0A0B4J234	112 aa		4.03	□□□□□ -1.76
SYNE2-223	ENST00000557005	TRAV40	A0A0B4J280	105 aa		4.03	□□□□□ -1.76
SYNE2-223	ENST00000557005		A0A1W2PPM0	123 aa		4.03	□□□□□ -1.76
SYNE2-223	ENST00000557005	MEF2C	Q06413	473 aa	Predicted RBP	4.03	□□□□□ -1.76
SYNE2-223	ENST00000557005	PPP1R27	Q86WC6	154 aa		4.03	□□□□□ -1.76
SYNE2-223	ENST00000557005	ZNF295-AS1	Q8N0V1	137 aa		4.03	□□□□□ -1.76
SYNE2-223	ENST00000557005	PSMB11	A5LHX3	300 aa		4.03	□□□□□ -1.77
SYNE2-223	ENST00000557005	TMEM8B	A6NDV4	472 aa		4.03	□□□□□ -1.77
SYNE2-223	ENST00000557005	GLRX	P35754	106 aa		4.03	□□□□□ -1.77
SYNE2-223	ENST00000557005	MORN5	Q5VZ52	161 aa		4.03	□□□□□ -1.77
SYNE2-223	ENST00000557005	PVRIG	Q6DKI7	326 aa		4.03	□□□□□ -1.77
SYNE2-223	ENST00000557005	PYGO2	Q9BRQ0	406 aa		4.03	□□□□□ -1.77
SYNE2-223	ENST00000557005	IGKV3D-20	A0A0C4DH25	116 aa		4.02	□□□□□ -1.77
SYNE2-223	ENST00000557005	IGHV1-3	A0A0C4DH29	117 aa		4.02	□□□□□ -1.77
SYNE2-223	ENST00000557005	NBR2	O15453	112 aa		4.02	□□□□□ -1.77
SYNE2-223	ENST00000557005	LTA	P01374	205 aa		4.02	□□□□□ -1.77
SYNE2-223	ENST00000557005	LMO1	P25800	156 aa		4.02	□□□□□ -1.77
SYNE2-223	ENST00000557005	ZNF833P	Q6ZTB9	187 aa		4.02	□□□□□ -1.77

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