RNA–Protein interactions for RNA: ENST00000555774.5

SHMT2-222, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best)

Gene SHMT2, Length 2,311 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-222ENST00000555774 RBPMS2Q6ZRY4 209 aaKnown RBP10.72□□□□□ -0.69
SHMT2-222ENST00000555774 FAM19A2Q8N3H0 131 aa10.72□□□□□ -0.69
SHMT2-222ENST00000555774 SCNM1Q9BWG6 230 aa10.72□□□□□ -0.69
SHMT2-222ENST00000555774 C20orf202A1L168 122 aa10.72□□□□□ -0.69
SHMT2-222ENST00000555774 APELAP0DMC3 54 aa10.72□□□□□ -0.69
SHMT2-222ENST00000555774 PLGLAQ15195 96 aa10.72□□□□□ -0.69
SHMT2-222ENST00000555774 DMRTA1Q5VZB9 504 aa10.72□□□□□ -0.69
SHMT2-222ENST00000555774 WNT10AQ9GZT5 417 aa10.72□□□□□ -0.69
SHMT2-222ENST00000555774 FAM181BA6NEQ2 426 aa10.71□□□□□ -0.69
SHMT2-222ENST00000555774 M0R2Z0 102 aa10.71□□□□□ -0.69
SHMT2-222ENST00000555774 ZNF672Q499Z4 452 aaPredicted RBP10.71□□□□□ -0.69
SHMT2-222ENST00000555774 C16orf54Q6UWD8 224 aa10.71□□□□□ -0.69
SHMT2-222ENST00000555774 LINC00322Q6ZN03 302 aaPredicted RBP10.71□□□□□ -0.69
SHMT2-222ENST00000555774 TCF24Q7RTU0 167 aa10.71□□□□□ -0.69
SHMT2-222ENST00000555774 LYPD1Q8N2G4 141 aa10.71□□□□□ -0.69
SHMT2-222ENST00000555774 SHANK2-AS3Q9BTD1 123 aa10.71□□□□□ -0.69
SHMT2-222ENST00000555774 CNOT1A5YKK6 2376 aaKnown RBP10.71□□□□□ -0.7
SHMT2-222ENST00000555774 LEMD1Q68G75 181 aa10.7□□□□□ -0.7
SHMT2-222ENST00000555774 S100A7AQ86SG5 101 aa10.7□□□□□ -0.7
SHMT2-222ENST00000555774 OR11H6Q8NGC7 330 aa10.7□□□□□ -0.7
SHMT2-222ENST00000555774 GTSF1Q8WW33 167 aa10.7□□□□□ -0.7
SHMT2-222ENST00000555774 CHCHD1Q96BP2 118 aaKnown RBP10.7□□□□□ -0.7
SHMT2-222ENST00000555774 SGK494Q96LW2 274 aa10.7□□□□□ -0.7
SHMT2-222ENST00000555774 SSBP4Q9BWG4 385 aaPredicted RBP10.7□□□□□ -0.7
SHMT2-222ENST00000555774 LYNX1G3V0Z9 82 aa10.7□□□□□ -0.7
SHMT2-222ENST00000555774 H3BRN7 92 aa10.7□□□□□ -0.7
SHMT2-222ENST00000555774 IGKV1-17P01599 117 aa10.7□□□□□ -0.7
SHMT2-222ENST00000555774 IGLC2P0DOY2 106 aa10.7□□□□□ -0.7
SHMT2-222ENST00000555774 IGLC3P0DOY3 106 aa10.7□□□□□ -0.7
SHMT2-222ENST00000555774 LYNX1P0DP58 116 aa10.7□□□□□ -0.7
SHMT2-222ENST00000555774 BTF3P20290 206 aaKnown RBP10.7□□□□□ -0.7
SHMT2-222ENST00000555774 DLX1P56177 255 aa10.7□□□□□ -0.7
SHMT2-222ENST00000555774 RNASEKQ6P5S7 137 aaKnown RBP10.7□□□□□ -0.7
SHMT2-222ENST00000555774 BPIFA4PQ86YQ2 179 aa10.7□□□□□ -0.7
SHMT2-222ENST00000555774 TMEM75Q8N9X5 138 aa10.7□□□□□ -0.7
SHMT2-222ENST00000555774 NPBQ8NG41 125 aa10.7□□□□□ -0.7
SHMT2-222ENST00000555774 OR2D3Q8NGH3 330 aa10.7□□□□□ -0.7
SHMT2-222ENST00000555774 GSX1Q9H4S2 264 aaPredicted RBP10.7□□□□□ -0.7
SHMT2-222ENST00000555774 TTC28Q96AY4 2481 aa10.7□□□□□ -0.7
SHMT2-222ENST00000555774 K7EIM0 57 aa10.69□□□□□ -0.7
SHMT2-222ENST00000555774 NBR2O15453 112 aa10.69□□□□□ -0.7
SHMT2-222ENST00000555774 CNIH1O95406 144 aa10.69□□□□□ -0.7
SHMT2-222ENST00000555774 HTR1DP28221 377 aa10.69□□□□□ -0.7
SHMT2-222ENST00000555774 CEACAM3P40198 252 aa10.69□□□□□ -0.7
SHMT2-222ENST00000555774 GPR6P46095 362 aaPredicted RBP10.69□□□□□ -0.7
SHMT2-222ENST00000555774 LHFPL4Q7Z7J7 247 aa10.69□□□□□ -0.7
SHMT2-222ENST00000555774 OR4F17Q8NGA8 305 aa10.69□□□□□ -0.7
SHMT2-222ENST00000555774 LINC01560Q8TB33 94 aa10.69□□□□□ -0.7
SHMT2-222ENST00000555774 RAB1BQ9H0U4 201 aa10.69□□□□□ -0.7
SHMT2-222ENST00000555774 DPM3Q9P2X0 92 aa10.69□□□□□ -0.7
SHMT2-222ENST00000555774 ONECUT1Q9UBC0 465 aa10.69□□□□□ -0.7
SHMT2-222ENST00000555774 NBEAQ8NFP9 2946 aa10.69□□□□□ -0.7
SHMT2-222ENST00000555774 TRBV19A0A075B6N1 114 aa10.69□□□□□ -0.7
SHMT2-222ENST00000555774 TIMM23O14925 209 aa10.69□□□□□ -0.7
SHMT2-222ENST00000555774 NDUFA3O95167 84 aa10.69□□□□□ -0.7
SHMT2-222ENST00000555774 IGLV2-11P01706 119 aa10.69□□□□□ -0.7
SHMT2-222ENST00000555774 COL8A1P27658 744 aa10.69□□□□□ -0.7
SHMT2-222ENST00000555774 FOXA3P55318 350 aaPredicted RBP10.69□□□□□ -0.7
SHMT2-222ENST00000555774 PGLYRP4Q96LB8 373 aa10.69□□□□□ -0.7
SHMT2-222ENST00000555774 C1RLQ9NZP8 487 aa10.69□□□□□ -0.7
SHMT2-222ENST00000555774 ZFP30Q9Y2G7 519 aa10.69□□□□□ -0.7
SHMT2-222ENST00000555774 NAV3Q8IVL0 2385 aa10.69□□□□□ -0.7
SHMT2-222ENST00000555774 TRAV30A0A087WSZ9 112 aa10.68□□□□□ -0.7
SHMT2-222ENST00000555774 H3BTX0 84 aa10.68□□□□□ -0.7
SHMT2-222ENST00000555774 K7EQM0 130 aa10.68□□□□□ -0.7
SHMT2-222ENST00000555774 M0R1W7 72 aa10.68□□□□□ -0.7
SHMT2-222ENST00000555774 HAX1O00165 279 aa10.68□□□□□ -0.7
SHMT2-222ENST00000555774 GAGE1Q13065 139 aa10.68□□□□□ -0.7
SHMT2-222ENST00000555774 ZNF48Q96MX3 618 aaPredicted RBP10.68□□□□□ -0.7
SHMT2-222ENST00000555774 COL5A1-AS1Q5SY13 56 aa10.68□□□□□ -0.7
SHMT2-222ENST00000555774 GOLT1AQ6ZVE7 132 aa10.68□□□□□ -0.7
SHMT2-222ENST00000555774 CFHR4Q92496 578 aa10.68□□□□□ -0.7
SHMT2-222ENST00000555774 TIMD4Q96H15 378 aa10.68□□□□□ -0.7
SHMT2-222ENST00000555774 NDFIP1Q9BT67 221 aa10.68□□□□□ -0.7
SHMT2-222ENST00000555774 C2orf70A6NJV1 201 aa10.67□□□□□ -0.7
SHMT2-222ENST00000555774 PRB3Q04118 309 aaPredicted RBP10.67□□□□□ -0.7
SHMT2-222ENST00000555774 EBLN2Q6P2I7 272 aa10.67□□□□□ -0.7
SHMT2-222ENST00000555774 PRNTQ86SH4 94 aa10.67□□□□□ -0.7
SHMT2-222ENST00000555774 GATD1Q8NB37 220 aa10.67□□□□□ -0.7
SHMT2-222ENST00000555774 TXN2Q99757 166 aa10.67□□□□□ -0.7
SHMT2-222ENST00000555774 TRAV9-2A0A087WT02 112 aa10.67□□□□□ -0.7
SHMT2-222ENST00000555774 A0A1B0GW15 77 aa10.67□□□□□ -0.7
SHMT2-222ENST00000555774 FAM90A27PA6NNH2 459 aa10.67□□□□□ -0.7
SHMT2-222ENST00000555774 CHEK1O14757 476 aa10.67□□□□□ -0.7
SHMT2-222ENST00000555774 SIAH2O43255 324 aa10.67□□□□□ -0.7
SHMT2-222ENST00000555774 HLA-DRB1P01911 266 aa10.67□□□□□ -0.7
SHMT2-222ENST00000555774 ZNF25P17030 456 aaPredicted RBP10.67□□□□□ -0.7
SHMT2-222ENST00000555774 HNRNPA3P51991 378 aaKnown RBP10.67□□□□□ -0.7
SHMT2-222ENST00000555774 ZNF124Q15973 351 aa10.67□□□□□ -0.7
SHMT2-222ENST00000555774 EXOC3-AS1Q8N2X6 119 aa10.67□□□□□ -0.7
SHMT2-222ENST00000555774 RNF125Q96EQ8 232 aa10.67□□□□□ -0.7
SHMT2-222ENST00000555774 URB1-AS1Q96HZ7 61 aa10.67□□□□□ -0.7
SHMT2-222ENST00000555774 ASPMQ8IZT6 3477 aa10.66□□□□□ -0.7
SHMT2-222ENST00000555774 CFAP47Q6ZTR5 3102 aa10.66□□□□□ -0.7
SHMT2-222ENST00000555774 LOC102724200A0A096LPH7 203 aaPredicted RBP10.66□□□□□ -0.7
SHMT2-222ENST00000555774 WI2-2373I1.2A0A1W2PRP0 233 aa10.66□□□□□ -0.7
SHMT2-222ENST00000555774 NPIPB5A8MRT5 1133 aa10.66□□□□□ -0.7
SHMT2-222ENST00000555774 ODF3BA8MYP8 253 aa10.66□□□□□ -0.7
SHMT2-222ENST00000555774 APOHP02749 345 aaPredicted RBP10.66□□□□□ -0.7
SHMT2-222ENST00000555774 FOXC1Q12948 553 aa10.66□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 41.4 ms