RNA–Protein interactions for RNA: ENST00000555612.5

SYNE2-220, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 1 (best)

Gene SYNE2, Length 6,766 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-220ENST00000555612 NUDT11Q96G61 164 aa6.7□□□□□ -1.34
SYNE2-220ENST00000555612 A0A0U1RRA0 63 aa6.7□□□□□ -1.34
SYNE2-220ENST00000555612 LINC01619G3V211 115 aa6.7□□□□□ -1.34
SYNE2-220ENST00000555612 FGF16O43320 207 aa6.7□□□□□ -1.34
SYNE2-220ENST00000555612 CEACAM8P31997 349 aaPredicted RBP6.7□□□□□ -1.34
SYNE2-220ENST00000555612 LINC00205P59089 165 aa6.7□□□□□ -1.34
SYNE2-220ENST00000555612 C21orf62-AS1Q17RA5 79 aa6.7□□□□□ -1.34
SYNE2-220ENST00000555612 NXT2Q9NPJ8 142 aaKnown RBP6.7□□□□□ -1.34
SYNE2-220ENST00000555612 ZNRD1Q9P1U0 126 aa6.7□□□□□ -1.34
SYNE2-220ENST00000555612 IZUMO1RA6ND01 250 aa6.7□□□□□ -1.34
SYNE2-220ENST00000555612 SNAI2O43623 268 aa6.7□□□□□ -1.34
SYNE2-220ENST00000555612 TNFSF13O75888 250 aa6.7□□□□□ -1.34
SYNE2-220ENST00000555612 C9orf139Q6ZV77 190 aa6.7□□□□□ -1.34
SYNE2-220ENST00000555612 IGHV2-70DA0A0C4DH43 119 aa6.7□□□□□ -1.34
SYNE2-220ENST00000555612 LBHQ53QV2 105 aaPredicted RBP6.7□□□□□ -1.34
SYNE2-220ENST00000555612 DAZ1Q9NQZ3 744 aaKnown RBP6.7□□□□□ -1.34
SYNE2-220ENST00000555612 DICER1Q9UPY3 1922 aaKnown RBP6.7□□□□□ -1.34
SYNE2-220ENST00000555612 ARHGEF17Q96PE2 2063 aaPredicted RBP6.7□□□□□ -1.34
SYNE2-220ENST00000555612 ATP6V0E1O15342 81 aa6.7□□□□□ -1.34
SYNE2-220ENST00000555612 Q6P435 159 aa6.7□□□□□ -1.34
SYNE2-220ENST00000555612 TREML4Q6UXN2 200 aa6.7□□□□□ -1.34
SYNE2-220ENST00000555612 SPTAN1Q13813 2472 aaKnown RBP6.7□□□□□ -1.34
SYNE2-220ENST00000555612 GAGE10A6NGK3 116 aa6.69□□□□□ -1.34
SYNE2-220ENST00000555612 RPL36AP83881 106 aaKnown RBP6.69□□□□□ -1.34
SYNE2-220ENST00000555612 RPL36ALQ969Q0 106 aaKnown RBP6.69□□□□□ -1.34
SYNE2-220ENST00000555612 GFI1Q99684 422 aa6.69□□□□□ -1.34
SYNE2-220ENST00000555612 SRP19P09132 144 aaKnown RBP6.69□□□□□ -1.34
SYNE2-220ENST00000555612 NUDT10Q8NFP7 164 aa6.69□□□□□ -1.34
SYNE2-220ENST00000555612 LINC00473A8K010 186 aa6.69□□□□□ -1.34
SYNE2-220ENST00000555612 SPATA31B1PQ5VZV4 182 aa6.69□□□□□ -1.34
SYNE2-220ENST00000555612 WDR83OSQ9Y284 106 aa6.69□□□□□ -1.34
SYNE2-220ENST00000555612 MED12Q93074 2177 aa6.69□□□□□ -1.34
SYNE2-220ENST00000555612 A0A1W2PRE2 83 aa6.69□□□□□ -1.34
SYNE2-220ENST00000555612 CCL20P78556 96 aa6.69□□□□□ -1.34
SYNE2-220ENST00000555612 CYSLTR1Q9Y271 337 aa6.69□□□□□ -1.34
SYNE2-220ENST00000555612 ZSWIM8A7E2V4 1837 aa6.69□□□□□ -1.34
SYNE2-220ENST00000555612 ID3Q02535 119 aa6.69□□□□□ -1.34
SYNE2-220ENST00000555612 LCN12Q6JVE5 192 aa6.69□□□□□ -1.34
SYNE2-220ENST00000555612 RNF144BQ7Z419 303 aa6.69□□□□□ -1.34
SYNE2-220ENST00000555612 Q8TAT8 98 aa6.69□□□□□ -1.34
SYNE2-220ENST00000555612 MRAPQ8TCY5 172 aa6.69□□□□□ -1.34
SYNE2-220ENST00000555612 CFHR2P36980 270 aa6.68□□□□□ -1.34
SYNE2-220ENST00000555612 XCL2Q9UBD3 114 aa6.68□□□□□ -1.34
SYNE2-220ENST00000555612 UQCR10Q9UDW1 63 aa6.68□□□□□ -1.34
SYNE2-220ENST00000555612 FAM215AQ9Y5M1 114 aa6.68□□□□□ -1.34
SYNE2-220ENST00000555612 IGHV3-64A0A075B6Q5 118 aa6.68□□□□□ -1.34
SYNE2-220ENST00000555612 K7EM74 188 aa6.68□□□□□ -1.34
SYNE2-220ENST00000555612 SLC25A20O43772 301 aa6.68□□□□□ -1.34
SYNE2-220ENST00000555612 WISP1O95388 367 aa6.68□□□□□ -1.34
SYNE2-220ENST00000555612 ZNF581Q9P0T4 197 aa6.68□□□□□ -1.34
SYNE2-220ENST00000555612 RNF222A6NCQ9 220 aa6.68□□□□□ -1.34
SYNE2-220ENST00000555612 PGPEP1LA6NFU8 196 aa6.68□□□□□ -1.34
SYNE2-220ENST00000555612 CKS1BP61024 79 aa6.68□□□□□ -1.34
SYNE2-220ENST00000555612 ZNF876PQ49A33 203 aa6.68□□□□□ -1.34
SYNE2-220ENST00000555612 SRSF1Q07955 248 aaKnown RBP eCLIP6.68□□□□□ -1.34
SYNE2-220ENST00000555612 F5H768 121 aa6.68□□□□□ -1.34
SYNE2-220ENST00000555612 J3QLI3 93 aa6.68□□□□□ -1.34
SYNE2-220ENST00000555612 HOXA3O43365 443 aaPredicted RBP6.68□□□□□ -1.34
SYNE2-220ENST00000555612 GRNP28799 593 aaKnown RBP6.68□□□□□ -1.34
SYNE2-220ENST00000555612 ZNF138P52744 262 aa6.68□□□□□ -1.34
SYNE2-220ENST00000555612 TMEM249Q2WGJ8 235 aa6.68□□□□□ -1.34
SYNE2-220ENST00000555612 PRDM13Q9H4Q3 707 aa6.68□□□□□ -1.34
SYNE2-220ENST00000555612 VSIRQ9H7M9 311 aa6.68□□□□□ -1.34
SYNE2-220ENST00000555612 MRPL16Q9NX20 251 aaKnown RBP6.68□□□□□ -1.34
SYNE2-220ENST00000555612 G3V318 75 aa6.68□□□□□ -1.34
SYNE2-220ENST00000555612 NAPSAO96009 420 aa6.68□□□□□ -1.34
SYNE2-220ENST00000555612 GZMBP10144 247 aa6.68□□□□□ -1.34
SYNE2-220ENST00000555612 COL5A1-AS1Q5SY13 56 aa6.68□□□□□ -1.34
SYNE2-220ENST00000555612 TTC9CQ8N5M4 171 aa6.68□□□□□ -1.34
SYNE2-220ENST00000555612 ROS1P08922 2347 aa6.68□□□□□ -1.34
SYNE2-220ENST00000555612 SCN8AQ9UQD0 1980 aa6.67□□□□□ -1.34
SYNE2-220ENST00000555612 CFHR3Q02985 330 aa6.67□□□□□ -1.34
SYNE2-220ENST00000555612 FAM19A2Q8N3H0 131 aa6.67□□□□□ -1.34
SYNE2-220ENST00000555612 TRGV9Q99603 122 aa6.67□□□□□ -1.34
SYNE2-220ENST00000555612 CBY1Q9Y3M2 126 aa6.67□□□□□ -1.34
SYNE2-220ENST00000555612 LDLRAD4O15165 306 aa6.67□□□□□ -1.34
SYNE2-220ENST00000555612 APOMO95445 188 aa6.67□□□□□ -1.34
SYNE2-220ENST00000555612 IGKV1-16P04430 117 aa6.67□□□□□ -1.34
SYNE2-220ENST00000555612 TCF23Q7RTU1 214 aa6.67□□□□□ -1.34
SYNE2-220ENST00000555612 LINC00158P58513 81 aa6.67□□□□□ -1.34
SYNE2-220ENST00000555612 ST6GALNAC6Q969X2 333 aa6.67□□□□□ -1.34
SYNE2-220ENST00000555612 GGTLC1Q9BX51 225 aa6.67□□□□□ -1.34
SYNE2-220ENST00000555612 RLFQ13129 1914 aa6.67□□□□□ -1.34
SYNE2-220ENST00000555612 CA1P00915 261 aaPredicted RBP6.67□□□□□ -1.34
SYNE2-220ENST00000555612 WT1P19544 449 aaPredicted RBP6.67□□□□□ -1.34
SYNE2-220ENST00000555612 TDGF1P3P51864 188 aa6.67□□□□□ -1.34
SYNE2-220ENST00000555612 DAD1P61803 113 aa6.67□□□□□ -1.34
SYNE2-220ENST00000555612 PRR31Q5SQ13 230 aa6.67□□□□□ -1.34
SYNE2-220ENST00000555612 USF3Q68DE3 2245 aa6.67□□□□□ -1.34
SYNE2-220ENST00000555612 RPL23P62829 140 aaKnown RBP6.67□□□□□ -1.34
SYNE2-220ENST00000555612 LY6G6FQ5SQ64 297 aa6.67□□□□□ -1.34
SYNE2-220ENST00000555612 RNF126Q9BV68 326 aa6.67□□□□□ -1.34
SYNE2-220ENST00000555612 NDUFS7O75251 213 aa6.66□□□□□ -1.34
SYNE2-220ENST00000555612 IGKV1-5P01602 117 aa6.66□□□□□ -1.34
SYNE2-220ENST00000555612 DUX4L9Q6RFH8 374 aaPredicted RBP6.66□□□□□ -1.34
SYNE2-220ENST00000555612 MCRIP2Q9BUT9 160 aaKnown RBP6.66□□□□□ -1.34
SYNE2-220ENST00000555612 F2Z2F3 143 aa6.66□□□□□ -1.34
SYNE2-220ENST00000555612 PMCHL2Q9BQD1 86 aa6.66□□□□□ -1.34
SYNE2-220ENST00000555612 PROK2Q9HC23 129 aa6.66□□□□□ -1.34
SYNE2-220ENST00000555612 S100A7L2Q5SY68 101 aa6.66□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 33.5 ms