RNA–Protein interactions for RNA: ENST00000552783.5

LIMA1-214, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,612 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-214ENST00000552783 CGB3P0DN86 165 aa3.9□□□□□ -1.79
LIMA1-214ENST00000552783 CGB7P0DN87 165 aa3.9□□□□□ -1.79
LIMA1-214ENST00000552783 GPR183P32249 361 aa3.9□□□□□ -1.79
LIMA1-214ENST00000552783 HBBP68871 147 aa3.9□□□□□ -1.79
LIMA1-214ENST00000552783 PRCDQ00LT1 54 aa3.9□□□□□ -1.79
LIMA1-214ENST00000552783 RTL8BQ17RB0 113 aa3.9□□□□□ -1.79
LIMA1-214ENST00000552783 COX19Q49B96 90 aa3.9□□□□□ -1.79
LIMA1-214ENST00000552783 UFSP1Q6NVU6 142 aa3.9□□□□□ -1.79
LIMA1-214ENST00000552783 FAM71F2Q6NXP2 309 aa3.9□□□□□ -1.79
LIMA1-214ENST00000552783 FAM231DQ6ZW35 169 aa3.9□□□□□ -1.79
LIMA1-214ENST00000552783 SMIM15Q7Z3B0 74 aa3.9□□□□□ -1.79
LIMA1-214ENST00000552783 RBMXL3Q8N7X1 1067 aaKnown RBP3.9□□□□□ -1.79
LIMA1-214ENST00000552783 NPIPB3Q92617 1050 aa3.9□□□□□ -1.79
LIMA1-214ENST00000552783 PAXXQ9BUH6 204 aa3.9□□□□□ -1.79
LIMA1-214ENST00000552783 RALYQ9UKM9 306 aaKnown RBP3.9□□□□□ -1.79
LIMA1-214ENST00000552783 ZNF257Q9Y2Q1 563 aa3.9□□□□□ -1.79
LIMA1-214ENST00000552783 PTPRQQ9UMZ3 2332 aa3.9□□□□□ -1.79
LIMA1-214ENST00000552783 CELSR1Q9NYQ6 3014 aa3.9□□□□□ -1.79
LIMA1-214ENST00000552783 RAI1Q7Z5J4 1906 aaPredicted RBP3.9□□□□□ -1.79
LIMA1-214ENST00000552783 F2RL2O00254 374 aa3.9□□□□□ -1.79
LIMA1-214ENST00000552783 CD5LO43866 347 aa3.9□□□□□ -1.79
LIMA1-214ENST00000552783 APOA2P02652 100 aa3.9□□□□□ -1.79
LIMA1-214ENST00000552783 FGF6P10767 208 aa3.9□□□□□ -1.79
LIMA1-214ENST00000552783 MYCNOSP40205 109 aa3.9□□□□□ -1.79
LIMA1-214ENST00000552783 WT1-ASQ06250 92 aa3.9□□□□□ -1.79
LIMA1-214ENST00000552783 CD69Q07108 199 aa3.9□□□□□ -1.79
LIMA1-214ENST00000552783 CIARTQ8N365 385 aaPredicted RBP3.9□□□□□ -1.79
LIMA1-214ENST00000552783 FER1L6-AS1Q8NA97 138 aa3.9□□□□□ -1.79
LIMA1-214ENST00000552783 NEU4Q8WWR8 484 aaPredicted RBP3.9□□□□□ -1.79
LIMA1-214ENST00000552783 RAB37Q96AX2 223 aa3.9□□□□□ -1.79
LIMA1-214ENST00000552783 HARBI1Q96MB7 349 aa3.9□□□□□ -1.79
LIMA1-214ENST00000552783 MLST8Q9BVC4 326 aa3.9□□□□□ -1.79
LIMA1-214ENST00000552783 RNF7Q9UBF6 113 aa3.9□□□□□ -1.79
LIMA1-214ENST00000552783 A0A1W2PRD5 423 aa3.89□□□□□ -1.79
LIMA1-214ENST00000552783 A0A1W2PRF3 423 aa3.89□□□□□ -1.79
LIMA1-214ENST00000552783 A0A1W2PRM7 423 aa3.89□□□□□ -1.79
LIMA1-214ENST00000552783 PGPA6NDG6 321 aa3.89□□□□□ -1.79
LIMA1-214ENST00000552783 H3BUT2 72 aa3.89□□□□□ -1.79
LIMA1-214ENST00000552783 UPK2O00526 184 aa3.89□□□□□ -1.79
LIMA1-214ENST00000552783 PRRG2O14669 202 aa3.89□□□□□ -1.79
LIMA1-214ENST00000552783 CCL3L1P16619 93 aa3.89□□□□□ -1.79
LIMA1-214ENST00000552783 ORM2P19652 201 aa3.89□□□□□ -1.79
LIMA1-214ENST00000552783 ARF6P62330 175 aa3.89□□□□□ -1.79
LIMA1-214ENST00000552783 TM4SF20Q53R12 229 aa3.89□□□□□ -1.79
LIMA1-214ENST00000552783 PEAR1Q5VY43 1037 aaPredicted RBP3.89□□□□□ -1.79
LIMA1-214ENST00000552783 RASL11AQ6T310 242 aa3.89□□□□□ -1.79
LIMA1-214ENST00000552783 LINC00305Q7Z4B0 112 aa3.89□□□□□ -1.79
LIMA1-214ENST00000552783 RITA1Q96K30 269 aa3.89□□□□□ -1.79
LIMA1-214ENST00000552783 RABAC1Q9UI14 185 aa3.89□□□□□ -1.79
LIMA1-214ENST00000552783 A0A096LNJ9 63 aa3.89□□□□□ -1.79
LIMA1-214ENST00000552783 GAGE10A6NGK3 116 aa3.89□□□□□ -1.79
LIMA1-214ENST00000552783 VSTM5A8MXK1 200 aa3.89□□□□□ -1.79
LIMA1-214ENST00000552783 C22orf46C9J442 243 aa3.89□□□□□ -1.79
LIMA1-214ENST00000552783 APOHP02749 345 aaPredicted RBP3.89□□□□□ -1.79
LIMA1-214ENST00000552783 SLC25A5P05141 298 aaKnown RBP3.89□□□□□ -1.79
LIMA1-214ENST00000552783 TAS2R45P59539 299 aa3.89□□□□□ -1.79
LIMA1-214ENST00000552783 TMEM177Q53S58 311 aa3.89□□□□□ -1.79
LIMA1-214ENST00000552783 C12orf54Q6X4T0 127 aa3.89□□□□□ -1.79
LIMA1-214ENST00000552783 OR4A5Q8NH83 315 aa3.89□□□□□ -1.79
LIMA1-214ENST00000552783 C18orf15Q96N68 181 aa3.89□□□□□ -1.79
LIMA1-214ENST00000552783 TTTY13Q9BZ97 58 aa3.89□□□□□ -1.79
LIMA1-214ENST00000552783 PRSS22Q9GZN4 317 aa3.89□□□□□ -1.79
LIMA1-214ENST00000552783 TPSG1Q9NRR2 321 aa3.89□□□□□ -1.79
LIMA1-214ENST00000552783 EPDR1Q9UM22 224 aa3.89□□□□□ -1.79
LIMA1-214ENST00000552783 COL27A1Q8IZC6 1860 aaPredicted RBP3.89□□□□□ -1.79
LIMA1-214ENST00000552783 CACNA1AO00555 2505 aa3.89□□□□□ -1.79
LIMA1-214ENST00000552783 SRRM5B3KS81 715 aa3.89□□□□□ -1.79
LIMA1-214ENST00000552783 COX7A2P2O60397 106 aa3.89□□□□□ -1.79
LIMA1-214ENST00000552783 IGKV3-15P01624 115 aa3.89□□□□□ -1.79
LIMA1-214ENST00000552783 FAM87AP0C7U9 286 aa3.89□□□□□ -1.79
LIMA1-214ENST00000552783 DLX1P56177 255 aa3.89□□□□□ -1.79
LIMA1-214ENST00000552783 GUSBP1Q15486 140 aa3.89□□□□□ -1.79
LIMA1-214ENST00000552783 C10orf113Q5VZT2 155 aa3.89□□□□□ -1.79
LIMA1-214ENST00000552783 HCP5Q6MZN7 132 aa3.89□□□□□ -1.79
LIMA1-214ENST00000552783 C5orf17Q8NAS9 161 aa3.89□□□□□ -1.79
LIMA1-214ENST00000552783 OR1N2Q8NGR9 330 aa3.89□□□□□ -1.79
LIMA1-214ENST00000552783 TPPP3Q9BW30 176 aa3.89□□□□□ -1.79
LIMA1-214ENST00000552783 SPRY4Q9C004 299 aa3.89□□□□□ -1.79
LIMA1-214ENST00000552783 RPP21Q9H633 154 aaKnown RBP3.89□□□□□ -1.79
LIMA1-214ENST00000552783 RAB9BQ9NP90 201 aa3.89□□□□□ -1.79
LIMA1-214ENST00000552783 MAP1AP78559 2803 aaPredicted RBP3.88□□□□□ -1.79
LIMA1-214ENST00000552783 C19orf71A6NCJ1 209 aa3.88□□□□□ -1.79
LIMA1-214ENST00000552783 G3V4G9 280 aa3.88□□□□□ -1.79
LIMA1-214ENST00000552783 DLL1O00548 723 aa3.88□□□□□ -1.79
LIMA1-214ENST00000552783 NBEAP1P0C6P0 100 aa3.88□□□□□ -1.79
LIMA1-214ENST00000552783 ARMS2P0C7Q2 107 aa3.88□□□□□ -1.79
LIMA1-214ENST00000552783 COX8AP10176 69 aa3.88□□□□□ -1.79
LIMA1-214ENST00000552783 HIST1H1EP10412 219 aaKnown RBP3.88□□□□□ -1.79
LIMA1-214ENST00000552783 TMEM11P17152 192 aa3.88□□□□□ -1.79
LIMA1-214ENST00000552783 COX7A1P24310 79 aa3.88□□□□□ -1.79
LIMA1-214ENST00000552783 CFHR2P36980 270 aa3.88□□□□□ -1.79
LIMA1-214ENST00000552783 ERHP84090 104 aaKnown RBP3.88□□□□□ -1.79
LIMA1-214ENST00000552783 HIST1H1AQ02539 215 aaPredicted RBP3.88□□□□□ -1.79
LIMA1-214ENST00000552783 MEF2CQ06413 473 aaPredicted RBP3.88□□□□□ -1.79
LIMA1-214ENST00000552783 CR1LQ2VPA4 569 aa3.88□□□□□ -1.79
LIMA1-214ENST00000552783 C2orf83Q53S99 150 aa3.88□□□□□ -1.79
LIMA1-214ENST00000552783 LINC01545Q5VT33 79 aa3.88□□□□□ -1.79
LIMA1-214ENST00000552783 TMEM108Q6UXF1 575 aa3.88□□□□□ -1.79
LIMA1-214ENST00000552783 GFRALQ6UXV0 394 aa3.88□□□□□ -1.79
LIMA1-214ENST00000552783 WFDC3Q8IUB2 231 aa3.88□□□□□ -1.79
Retrieved 100 of 20,778 RNA–protein pairs in 52.9 ms