RNA–Protein interactions for RNA: ENST00000545540.5

USP28-214, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 2 BASIC

Gene USP28, Length 3,431 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-214ENST00000545540 STPG4Q8N801 248 aa12.02□□□□□ -0.48
USP28-214ENST00000545540 INSIG2Q9Y5U4 225 aa12.02□□□□□ -0.48
USP28-214ENST00000545540 SUB1P53999 127 aaKnown RBP eCLIP12.02□□□□□ -0.49
USP28-214ENST00000545540 PRNTQ86SH4 94 aa12.02□□□□□ -0.49
USP28-214ENST00000545540 IGHV3-35A0A0C4DH35 117 aa12.02□□□□□ -0.49
USP28-214ENST00000545540 RPL27AP46776 148 aaKnown RBP12.02□□□□□ -0.49
USP28-214ENST00000545540 IGFL3Q6UXB1 125 aa12.02□□□□□ -0.49
USP28-214ENST00000545540 GTSF1Q8WW33 167 aa12.02□□□□□ -0.49
USP28-214ENST00000545540 C20orf144Q9BQM9 153 aa12.02□□□□□ -0.49
USP28-214ENST00000545540 HYPMO75409 117 aa12.01□□□□□ -0.49
USP28-214ENST00000545540 ESDP10768 282 aa12.01□□□□□ -0.49
USP28-214ENST00000545540 GOLT1AQ6ZVE7 132 aa12.01□□□□□ -0.49
USP28-214ENST00000545540 OR1L4Q8NGR5 311 aa12.01□□□□□ -0.49
USP28-214ENST00000545540 OR8B2Q96RD0 313 aa12.01□□□□□ -0.49
USP28-214ENST00000545540 RNF2Q99496 336 aa12.01□□□□□ -0.49
USP28-214ENST00000545540 TRAV9-1A0A075B6T8 112 aa12.01□□□□□ -0.49
USP28-214ENST00000545540 IGHV3-23P01764 117 aa12.01□□□□□ -0.49
USP28-214ENST00000545540 PSG1P11464 419 aa12.01□□□□□ -0.49
USP28-214ENST00000545540 FBLN7Q53RD9 439 aa12.01□□□□□ -0.49
USP28-214ENST00000545540 MBD6Q96DN6 1003 aa12.01□□□□□ -0.49
USP28-214ENST00000545540 MRPL32Q9BYC8 188 aaKnown RBP12.01□□□□□ -0.49
USP28-214ENST00000545540 Q9H3A6 140 aa12.01□□□□□ -0.49
USP28-214ENST00000545540 FNDC10F2Z333 226 aa12.01□□□□□ -0.49
USP28-214ENST00000545540 MT-ND6P03923 174 aa12.01□□□□□ -0.49
USP28-214ENST00000545540 TMEM186Q96B77 213 aa12.01□□□□□ -0.49
USP28-214ENST00000545540 CUBNO60494 3623 aa12□□□□□ -0.49
USP28-214ENST00000545540 TMSB15BA0A087X1C1 80 aa12□□□□□ -0.49
USP28-214ENST00000545540 CNIH1O95406 144 aa12□□□□□ -0.49
USP28-214ENST00000545540 MEF2CQ06413 473 aaPredicted RBP12□□□□□ -0.49
USP28-214ENST00000545540 DMRTA1Q5VZB9 504 aa12□□□□□ -0.49
USP28-214ENST00000545540 PNKDQ8N490 385 aa12□□□□□ -0.49
USP28-214ENST00000545540 NUP37Q8NFH4 326 aa12□□□□□ -0.49
USP28-214ENST00000545540 VSTM2AQ8TAG5 236 aa12□□□□□ -0.49
USP28-214ENST00000545540 NCOR1P1Q9H4R4 102 aa12□□□□□ -0.49
USP28-214ENST00000545540 TRBV9A0A0B4J1U6 114 aa12□□□□□ -0.49
USP28-214ENST00000545540 OR10J3Q5JRS4 329 aa12□□□□□ -0.49
USP28-214ENST00000545540 LDLRAD2Q5SZI1 272 aa12□□□□□ -0.49
USP28-214ENST00000545540 Q8NA96 180 aa12□□□□□ -0.49
USP28-214ENST00000545540 IGHV1-69-2A0A0G2JMI3 117 aa11.99□□□□□ -0.49
USP28-214ENST00000545540 FAM90A27PA6NNH2 459 aa11.99□□□□□ -0.49
USP28-214ENST00000545540 PRRX1P54821 245 aa11.99□□□□□ -0.49
USP28-214ENST00000545540 SSX8Q7RTT4 187 aa11.99□□□□□ -0.49
USP28-214ENST00000545540 C19orf24Q9BVV8 132 aa11.99□□□□□ -0.49
USP28-214ENST00000545540 TMEM133Q9H2Q1 129 aa11.99□□□□□ -0.49
USP28-214ENST00000545540 ALKBH7Q9BT30 221 aaPredicted RBP11.99□□□□□ -0.49
USP28-214ENST00000545540 ONECUT1Q9UBC0 465 aa11.99□□□□□ -0.49
USP28-214ENST00000545540 IGHV2-26A0A0B4J1V2 119 aa11.99□□□□□ -0.49
USP28-214ENST00000545540 HNRNPA3P51991 378 aaKnown RBP11.99□□□□□ -0.49
USP28-214ENST00000545540 TMEM155Q4W5P6 130 aa11.99□□□□□ -0.49
USP28-214ENST00000545540 GRAMD2BQ96HH9 432 aa11.99□□□□□ -0.49
USP28-214ENST00000545540 SHISA9B4DS77 424 aa11.98□□□□□ -0.49
USP28-214ENST00000545540 M0R3E3 92 aa11.98□□□□□ -0.49
USP28-214ENST00000545540 FXYD7P58549 80 aa11.98□□□□□ -0.49
USP28-214ENST00000545540 ARF6P62330 175 aa11.98□□□□□ -0.49
USP28-214ENST00000545540 PERPQ96FX8 193 aa11.98□□□□□ -0.49
USP28-214ENST00000545540 URB1-AS1Q96HZ7 61 aa11.98□□□□□ -0.49
USP28-214ENST00000545540 CHODLQ9H9P2 273 aa11.98□□□□□ -0.49
USP28-214ENST00000545540 SIGLEC9Q9Y336 463 aa11.98□□□□□ -0.49
USP28-214ENST00000545540 GOLT1BQ9Y3E0 138 aa11.98□□□□□ -0.49
USP28-214ENST00000545540 P01737 135 aa11.98□□□□□ -0.49
USP28-214ENST00000545540 IGLC2P0DOY2 106 aa11.98□□□□□ -0.49
USP28-214ENST00000545540 IGLC3P0DOY3 106 aa11.98□□□□□ -0.49
USP28-214ENST00000545540 KLRD1Q13241 179 aa11.98□□□□□ -0.49
USP28-214ENST00000545540 IGFL4Q6B9Z1 124 aa11.98□□□□□ -0.49
USP28-214ENST00000545540 SELENOKQ9Y6D0 94 aa11.98□□□□□ -0.49
USP28-214ENST00000545540 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP11.98□□□□□ -0.49
USP28-214ENST00000545540 FAM181BA6NEQ2 426 aa11.98□□□□□ -0.49
USP28-214ENST00000545540 CTRLP40313 264 aa11.98□□□□□ -0.49
USP28-214ENST00000545540 DLX6P56179 175 aa11.98□□□□□ -0.49
USP28-214ENST00000545540 UNQ5815/PRO19632Q6UWF5 114 aa11.98□□□□□ -0.49
USP28-214ENST00000545540 DAZAP1Q96EP5 407 aaKnown RBP11.98□□□□□ -0.49
USP28-214ENST00000545540 HIST1H1EP10412 219 aaKnown RBP11.97□□□□□ -0.49
USP28-214ENST00000545540 PPP1R27Q86WC6 154 aa11.97□□□□□ -0.49
USP28-214ENST00000545540 GPR82Q96P67 336 aa11.97□□□□□ -0.49
USP28-214ENST00000545540 IGHV1-3A0A0C4DH29 117 aa11.97□□□□□ -0.49
USP28-214ENST00000545540 hDV102S1A0JD36 115 aa11.97□□□□□ -0.49
USP28-214ENST00000545540 DLEU1O43261 78 aa11.97□□□□□ -0.49
USP28-214ENST00000545540 SNAI2O43623 268 aa11.97□□□□□ -0.49
USP28-214ENST00000545540 TCF21O43680 179 aa11.97□□□□□ -0.49
USP28-214ENST00000545540 COL8A1P27658 744 aa11.97□□□□□ -0.49
USP28-214ENST00000545540 OR4B1Q8NGF8 309 aa11.97□□□□□ -0.49
USP28-214ENST00000545540 IGLL1P15814 213 aa11.96□□□□□ -0.49
USP28-214ENST00000545540 HES1Q14469 280 aa11.96□□□□□ -0.49
USP28-214ENST00000545540 RPEQ96AT9 228 aa11.96□□□□□ -0.49
USP28-214ENST00000545540 C7orf69Q9H7B7 122 aa11.96□□□□□ -0.49
USP28-214ENST00000545540 TCRAP04437 139 aa11.96□□□□□ -0.49
USP28-214ENST00000545540 SRSF12Q8WXF0 261 aaKnown RBP11.96□□□□□ -0.49
USP28-214ENST00000545540 ARL2-SNX15V9GYD0 113 aa11.96□□□□□ -0.5
USP28-214ENST00000545540 GP9P14770 177 aa11.95□□□□□ -0.5
USP28-214ENST00000545540 MYCNOSP40205 109 aa11.95□□□□□ -0.5
USP28-214ENST00000545540 THAP8Q8NA92 274 aa11.95□□□□□ -0.5
USP28-214ENST00000545540 RPP21Q9H633 154 aaKnown RBP11.95□□□□□ -0.5
USP28-214ENST00000545540 C22orf15Q8WYQ4 148 aa11.95□□□□□ -0.5
USP28-214ENST00000545540 LAMTOR2Q9Y2Q5 125 aa11.95□□□□□ -0.5
USP28-214ENST00000545540 PPIAL4CA0A0B4J2A2 164 aa11.95□□□□□ -0.5
USP28-214ENST00000545540 TIMM23O14925 209 aa11.95□□□□□ -0.5
USP28-214ENST00000545540 PPIAL4GP0DN37 164 aa11.95□□□□□ -0.5
USP28-214ENST00000545540 FOXC1Q12948 553 aa11.95□□□□□ -0.5
USP28-214ENST00000545540 CDSNQ15517 529 aa11.95□□□□□ -0.5
USP28-214ENST00000545540 HIGD1AQ9Y241 93 aa11.95□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 116.1 ms