RNA–Protein interactions for RNA: ENST00000544750.1

USP28-212, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 5

Gene USP28, Length 542 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-212ENST00000544750 SOHLH1Q5JUK2 328 aa9.13□□□□□ -0.95
USP28-212ENST00000544750 C1orf134Q5TEV5 83 aa9.13□□□□□ -0.95
USP28-212ENST00000544750 PRSS54Q6PEW0 395 aa9.13□□□□□ -0.95
USP28-212ENST00000544750 ZNF705AQ6ZN79 300 aaPredicted RBP9.13□□□□□ -0.95
USP28-212ENST00000544750 Q8N1X5 172 aa9.13□□□□□ -0.95
USP28-212ENST00000544750 RNASEH2CQ8TDP1 164 aaKnown RBP9.13□□□□□ -0.95
USP28-212ENST00000544750 RAB40CQ96S21 281 aa9.13□□□□□ -0.95
USP28-212ENST00000544750 NEU1Q99519 415 aa9.13□□□□□ -0.95
USP28-212ENST00000544750 U3KQE9 123 aa9.13□□□□□ -0.95
USP28-212ENST00000544750 FAM90A26D6RGX4 464 aa9.12□□□□□ -0.95
USP28-212ENST00000544750 IGLC1P0CG04 106 aa9.12□□□□□ -0.95
USP28-212ENST00000544750 IAPPP10997 89 aa9.12□□□□□ -0.95
USP28-212ENST00000544750 RND2P52198 227 aa9.12□□□□□ -0.95
USP28-212ENST00000544750 IFITM3Q01628 133 aa9.12□□□□□ -0.95
USP28-212ENST00000544750 TNP2Q05952 138 aa9.12□□□□□ -0.95
USP28-212ENST00000544750 C4orf46Q504U0 113 aa9.12□□□□□ -0.95
USP28-212ENST00000544750 UBE2DNLQ8IWF7 75 aa9.12□□□□□ -0.95
USP28-212ENST00000544750 BATF3Q9NR55 127 aa9.12□□□□□ -0.95
USP28-212ENST00000544750 U3KQ87 197 aa9.12□□□□□ -0.95
USP28-212ENST00000544750 RPS10-NUDT3A0A1W2PQS6 291 aa9.11□□□□□ -0.95
USP28-212ENST00000544750 ZNF705FA8MVS1 300 aaPredicted RBP9.11□□□□□ -0.95
USP28-212ENST00000544750 C16orf90A8MZG2 172 aa9.11□□□□□ -0.95
USP28-212ENST00000544750 UPK1BO75841 260 aa9.11□□□□□ -0.95
USP28-212ENST00000544750 ZNF705DP0CH99 300 aaPredicted RBP9.11□□□□□ -0.95
USP28-212ENST00000544750 ZNF705BP0CI00 300 aaPredicted RBP9.11□□□□□ -0.95
USP28-212ENST00000544750 SLC25A4P12235 298 aa9.11□□□□□ -0.95
USP28-212ENST00000544750 ASAH1Q13510 395 aa9.11□□□□□ -0.95
USP28-212ENST00000544750 TIGITQ495A1 244 aa9.11□□□□□ -0.95
USP28-212ENST00000544750 OR4D5Q8NGN0 318 aa9.11□□□□□ -0.95
USP28-212ENST00000544750 COQ8AQ8NI60 647 aa9.11□□□□□ -0.95
USP28-212ENST00000544750 MITD1Q8WV92 249 aa9.11□□□□□ -0.95
USP28-212ENST00000544750 METTL26Q96S19 204 aa9.11□□□□□ -0.95
USP28-212ENST00000544750 C1QTNF4Q9BXJ3 329 aa9.11□□□□□ -0.95
USP28-212ENST00000544750 WDR12Q9GZL7 423 aaKnown RBP9.11□□□□□ -0.95
USP28-212ENST00000544750 MAGT1Q9H0U3 335 aa9.11□□□□□ -0.95
USP28-212ENST00000544750 NUDT15Q9NV35 164 aa9.11□□□□□ -0.95
USP28-212ENST00000544750 XCL2Q9UBD3 114 aa9.11□□□□□ -0.95
USP28-212ENST00000544750 TRAV6A0A075B6T7 132 aa9.1□□□□□ -0.95
USP28-212ENST00000544750 PRSS46E5RG02 174 aa9.1□□□□□ -0.95
USP28-212ENST00000544750 H3BMM0 161 aa9.1□□□□□ -0.95
USP28-212ENST00000544750 SYNGR2O43760 224 aa9.1□□□□□ -0.95
USP28-212ENST00000544750 SPART-AS1P0CW21 52 aa9.1□□□□□ -0.95
USP28-212ENST00000544750 ID3Q02535 119 aa9.1□□□□□ -0.95
USP28-212ENST00000544750 ZNF846Q147U1 533 aa9.1□□□□□ -0.95
USP28-212ENST00000544750 GLMPQ8WWB7 406 aa9.1□□□□□ -0.95
USP28-212ENST00000544750 SEC22CQ9BRL7 303 aa9.1□□□□□ -0.95
USP28-212ENST00000544750 OR10J1P30954 320 aa9.09□□□□□ -0.95
USP28-212ENST00000544750 PSMG4Q5JS54 123 aa9.09□□□□□ -0.95
USP28-212ENST00000544750 C16orf54Q6UWD8 224 aa9.09□□□□□ -0.95
USP28-212ENST00000544750 NOXA1Q86UR1 476 aa9.09□□□□□ -0.95
USP28-212ENST00000544750 OR1S2Q8NGQ3 325 aa9.09□□□□□ -0.95
USP28-212ENST00000544750 NPIPB3Q92617 1050 aa9.09□□□□□ -0.95
USP28-212ENST00000544750 SEPSECSQ9HD40 501 aaKnown RBP9.09□□□□□ -0.95
USP28-212ENST00000544750 DKK2Q9UBU2 259 aa9.09□□□□□ -0.95
USP28-212ENST00000544750 IGKV1D-37A0A075B6S9 117 aa9.08□□□□□ -0.96
USP28-212ENST00000544750 TRAV30A0A087WSZ9 112 aa9.08□□□□□ -0.96
USP28-212ENST00000544750 TMEM189A5PLL7 270 aa9.08□□□□□ -0.96
USP28-212ENST00000544750 HELTA6NFD8 242 aa9.08□□□□□ -0.96
USP28-212ENST00000544750 SMIM9A6NGZ8 99 aa9.08□□□□□ -0.96
USP28-212ENST00000544750 WRBO00258 174 aa9.08□□□□□ -0.96
USP28-212ENST00000544750 MED6O75586 246 aa9.08□□□□□ -0.96
USP28-212ENST00000544750 H2AFB2P0C5Z0 115 aa9.08□□□□□ -0.96
USP28-212ENST00000544750 ATP5IP56385 69 aaPredicted RBP9.08□□□□□ -0.96
USP28-212ENST00000544750 YPEL3P61236 119 aaPredicted RBP9.08□□□□□ -0.96
USP28-212ENST00000544750 NUTF2P61970 127 aaKnown RBP9.08□□□□□ -0.96
USP28-212ENST00000544750 POLR2GP62487 172 aaKnown RBP eCLIP9.08□□□□□ -0.96
USP28-212ENST00000544750 GAMTQ14353 236 aa9.08□□□□□ -0.96
USP28-212ENST00000544750 OXA1LQ15070 435 aa9.08□□□□□ -0.96
USP28-212ENST00000544750 ETFRF1Q6IPR1 90 aa9.08□□□□□ -0.96
USP28-212ENST00000544750 ACY3Q96HD9 319 aa9.08□□□□□ -0.96
USP28-212ENST00000544750 FAM240BA0A1B0GVZ2 78 aa9.07□□□□□ -0.96
USP28-212ENST00000544750 H3BP45 60 aa9.07□□□□□ -0.96
USP28-212ENST00000544750 CCSO14618 274 aa9.07□□□□□ -0.96
USP28-212ENST00000544750 HLA-DRB4P13762 266 aa9.07□□□□□ -0.96
USP28-212ENST00000544750 GPX4P36969 197 aaPredicted RBP9.07□□□□□ -0.96
USP28-212ENST00000544750 PAX9P55771 341 aa9.07□□□□□ -0.96
USP28-212ENST00000544750 IAH1Q2TAA2 248 aaPredicted RBP9.07□□□□□ -0.96
USP28-212ENST00000544750 MZT2BQ6NZ67 158 aa9.07□□□□□ -0.96
USP28-212ENST00000544750 ZBTB8BQ8NAP8 495 aaPredicted RBP9.07□□□□□ -0.96
USP28-212ENST00000544750 ZNF431Q8TF32 576 aaPredicted RBP9.07□□□□□ -0.96
USP28-212ENST00000544750 CIB3Q96Q77 187 aaPredicted RBP9.07□□□□□ -0.96
USP28-212ENST00000544750 NIPSNAP3BQ9BS92 247 aa9.07□□□□□ -0.96
USP28-212ENST00000544750 RCL1Q9Y2P8 373 aaKnown RBP9.07□□□□□ -0.96
USP28-212ENST00000544750 HLA-DRB4X5D2U9 266 aa9.07□□□□□ -0.96
USP28-212ENST00000544750 IGKV1OR2-108A0A075B7D4 117 aa9.06□□□□□ -0.96
USP28-212ENST00000544750 PMS2P5A8MQ11 134 aa9.06□□□□□ -0.96
USP28-212ENST00000544750 TOMM40O96008 361 aa9.06□□□□□ -0.96
USP28-212ENST00000544750 NKX2-1P43699 371 aaPredicted RBP9.06□□□□□ -0.96
USP28-212ENST00000544750 AP2S1P53680 142 aaPredicted RBP9.06□□□□□ -0.96
USP28-212ENST00000544750 FAM3BP58499 235 aaPredicted RBP9.06□□□□□ -0.96
USP28-212ENST00000544750 USF2Q15853 346 aaPredicted RBP9.06□□□□□ -0.96
USP28-212ENST00000544750 FAM222AQ5U5X8 452 aa9.06□□□□□ -0.96
USP28-212ENST00000544750 SCRT2Q9NQ03 307 aa9.06□□□□□ -0.96
USP28-212ENST00000544750 TEX48A0A1B0GUV7 120 aa9.05□□□□□ -0.96
USP28-212ENST00000544750 SSSCA1O60232 199 aa9.05□□□□□ -0.96
USP28-212ENST00000544750 SCGB2A1O75556 95 aa9.05□□□□□ -0.96
USP28-212ENST00000544750 CCNKO75909 580 aa9.05□□□□□ -0.96
USP28-212ENST00000544750 HNRNPCP07910 306 aaKnown RBP eCLIP9.05□□□□□ -0.96
USP28-212ENST00000544750 PSG1P11464 419 aa9.05□□□□□ -0.96
USP28-212ENST00000544750 EIF2B2P49770 351 aaKnown RBP9.05□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms