RNA–Protein interactions for RNA: ENST00000544301.6

VIM-209, Transcript of vimentin, humanhuman

APPRIS P1 TSL 1 (best)

Gene VIM, Length 2,135 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-209ENST00000544301 C1orf122Q6ZSJ8 110 aa14.25□□□□□ -0.13
VIM-209ENST00000544301 FMC1Q96HJ9 113 aa14.25□□□□□ -0.13
VIM-209ENST00000544301 CHRDL1Q9BU40 450 aa14.25□□□□□ -0.13
VIM-209ENST00000544301 ZNF331Q9NQX6 463 aaPredicted RBP14.25□□□□□ -0.13
VIM-209ENST00000544301 TOMM40O96008 361 aa14.24□□□□□ -0.13
VIM-209ENST00000544301 TCRAP04437 139 aa14.24□□□□□ -0.13
VIM-209ENST00000544301 HIST1H1EP10412 219 aaKnown RBP14.24□□□□□ -0.13
VIM-209ENST00000544301 REC114Q7Z4M0 266 aa14.24□□□□□ -0.13
VIM-209ENST00000544301 VMO1Q7Z5L0 202 aa14.24□□□□□ -0.13
VIM-209ENST00000544301 NUP35Q8NFH5 326 aa14.24□□□□□ -0.13
VIM-209ENST00000544301 NOL4LQ96MY1 436 aaPredicted RBP14.24□□□□□ -0.13
VIM-209ENST00000544301 ZNF586Q9NXT0 402 aa14.24□□□□□ -0.13
VIM-209ENST00000544301 A8MWP6 167 aa14.24□□□□□ -0.13
VIM-209ENST00000544301 BMPR1BO00238 502 aa14.24□□□□□ -0.13
VIM-209ENST00000544301 ZFP36P26651 326 aaKnown RBP14.24□□□□□ -0.13
VIM-209ENST00000544301 LY6DQ14210 128 aa14.24□□□□□ -0.13
VIM-209ENST00000544301 Q6ZWC4 215 aa14.24□□□□□ -0.13
VIM-209ENST00000544301 DYNAPQ8N1N2 210 aa14.24□□□□□ -0.13
VIM-209ENST00000544301 WIPF2Q8TF74 440 aaPredicted RBP14.24□□□□□ -0.13
VIM-209ENST00000544301 TMEM68Q96MH6 324 aa14.24□□□□□ -0.13
VIM-209ENST00000544301 RBM14Q96PK6 669 aaKnown RBP14.24□□□□□ -0.13
VIM-209ENST00000544301 NAGKQ9UJ70 344 aa14.24□□□□□ -0.13
VIM-209ENST00000544301 COL6A6A6NMZ7 2263 aa14.23□□□□□ -0.13
VIM-209ENST00000544301 LTAP01374 205 aa14.23□□□□□ -0.13
VIM-209ENST00000544301 APCSP02743 223 aa14.23□□□□□ -0.13
VIM-209ENST00000544301 CDKN1AP38936 164 aa14.23□□□□□ -0.13
VIM-209ENST00000544301 OR10J3Q5JRS4 329 aa14.23□□□□□ -0.13
VIM-209ENST00000544301 KLF17Q5JT82 389 aaPredicted RBP14.23□□□□□ -0.13
VIM-209ENST00000544301 RASL11AQ6T310 242 aa14.23□□□□□ -0.13
VIM-209ENST00000544301 KIR3DL3Q8N743 410 aa14.23□□□□□ -0.13
VIM-209ENST00000544301 TSKUQ8WUA8 353 aa14.23□□□□□ -0.13
VIM-209ENST00000544301 OTORQ9NRC9 128 aa14.23□□□□□ -0.13
VIM-209ENST00000544301 ZMAT5Q9UDW3 170 aaKnown RBP14.23□□□□□ -0.13
VIM-209ENST00000544301 NDUFS7O75251 213 aa14.22□□□□□ -0.13
VIM-209ENST00000544301 CCDC144NLQ6NUI1 221 aa14.22□□□□□ -0.13
VIM-209ENST00000544301 LINC00322Q6ZN03 302 aaPredicted RBP14.22□□□□□ -0.13
VIM-209ENST00000544301 NEU1Q99519 415 aa14.22□□□□□ -0.13
VIM-209ENST00000544301 SHANK2-AS3Q9BTD1 123 aa14.22□□□□□ -0.13
VIM-209ENST00000544301 HOXB4P17483 251 aaPredicted RBP14.21□□□□□ -0.13
VIM-209ENST00000544301 CD33P20138 364 aa14.21□□□□□ -0.13
VIM-209ENST00000544301 SRIP30626 198 aa14.21□□□□□ -0.13
VIM-209ENST00000544301 BRS3P32247 399 aa14.21□□□□□ -0.13
VIM-209ENST00000544301 ZNF562Q6V9R5 426 aa14.21□□□□□ -0.13
VIM-209ENST00000544301 LURAP1LQ8IV03 231 aa14.21□□□□□ -0.13
VIM-209ENST00000544301 HSPB9Q9BQS6 159 aa14.21□□□□□ -0.13
VIM-209ENST00000544301 NPIPB5A8MRT5 1133 aa14.21□□□□□ -0.13
VIM-209ENST00000544301 HIGD1CA8MV81 97 aa14.21□□□□□ -0.13
VIM-209ENST00000544301 H3BRN7 92 aa14.21□□□□□ -0.13
VIM-209ENST00000544301 SLAQ13239 276 aa14.21□□□□□ -0.13
VIM-209ENST00000544301 GDF5OSQ5U4N7 250 aa14.21□□□□□ -0.13
VIM-209ENST00000544301 Q8N6K4 173 aa14.21□□□□□ -0.13
VIM-209ENST00000544301 ZNF491Q8N8L2 437 aa14.21□□□□□ -0.13
VIM-209ENST00000544301 FANCD2OSQ96PS1 177 aa14.21□□□□□ -0.13
VIM-209ENST00000544301 SAMD10Q9BYL1 202 aa14.21□□□□□ -0.13
VIM-209ENST00000544301 A6NNC1 897 aa14.2□□□□□ -0.14
VIM-209ENST00000544301 OOSP1A8MZH6 123 aa14.2□□□□□ -0.14
VIM-209ENST00000544301 EXOC3-AS1Q8N2X6 119 aa14.2□□□□□ -0.14
VIM-209ENST00000544301 ARPC1AQ92747 370 aa14.2□□□□□ -0.14
VIM-209ENST00000544301 PRSS22Q9GZN4 317 aa14.2□□□□□ -0.14
VIM-209ENST00000544301 POLR3KQ9Y2Y1 108 aaPredicted RBP14.2□□□□□ -0.14
VIM-209ENST00000544301 IGLV11-55A0A075B6I3 123 aa14.2□□□□□ -0.14
VIM-209ENST00000544301 C19orf71A6NCJ1 209 aa14.2□□□□□ -0.14
VIM-209ENST00000544301 NCBP2LA6PVI3 153 aaKnown RBP14.2□□□□□ -0.14
VIM-209ENST00000544301 ZNF253O75346 499 aa14.2□□□□□ -0.14
VIM-209ENST00000544301 NDPQ00604 133 aa14.2□□□□□ -0.14
VIM-209ENST00000544301 MINOS1Q5TGZ0 78 aa14.2□□□□□ -0.14
VIM-209ENST00000544301 RNF125Q96EQ8 232 aa14.2□□□□□ -0.14
VIM-209ENST00000544301 RCHY1Q96PM5 261 aa14.2□□□□□ -0.14
VIM-209ENST00000544301 RPP21Q9H633 154 aaKnown RBP14.2□□□□□ -0.14
VIM-209ENST00000544301 ZNF492Q9P255 531 aa14.2□□□□□ -0.14
VIM-209ENST00000544301 MINOS1-NBL1R4GNA1 71 aa14.2□□□□□ -0.14
VIM-209ENST00000544301 S4R3C0 116 aa14.2□□□□□ -0.14
VIM-209ENST00000544301 CHD8Q9HCK8 2581 aa14.19□□□□□ -0.14
VIM-209ENST00000544301 ITPR1Q14643 2758 aa14.19□□□□□ -0.14
VIM-209ENST00000544301 WI2-2373I1.2A0A1W2PRP0 233 aa14.19□□□□□ -0.14
VIM-209ENST00000544301 VWC2LB2RUY7 222 aa14.19□□□□□ -0.14
VIM-209ENST00000544301 GPX1P07203 203 aa14.19□□□□□ -0.14
VIM-209ENST00000544301 EBI3Q14213 229 aa14.19□□□□□ -0.14
VIM-209ENST00000544301 BPIFA4PQ86YQ2 179 aa14.19□□□□□ -0.14
VIM-209ENST00000544301 UBTD1Q9HAC8 227 aa14.19□□□□□ -0.14
VIM-209ENST00000544301 TRBV19A0A075B6N1 114 aa14.18□□□□□ -0.14
VIM-209ENST00000544301 ZNF705FA8MVS1 300 aaPredicted RBP14.18□□□□□ -0.14
VIM-209ENST00000544301 IL4P05112 153 aa14.18□□□□□ -0.14
VIM-209ENST00000544301 ZNF705DP0CH99 300 aaPredicted RBP14.18□□□□□ -0.14
VIM-209ENST00000544301 ZNF705BP0CI00 300 aaPredicted RBP14.18□□□□□ -0.14
VIM-209ENST00000544301 Q86TA4 180 aa14.18□□□□□ -0.14
VIM-209ENST00000544301 TTC9CQ8N5M4 171 aa14.18□□□□□ -0.14
VIM-209ENST00000544301 SIGLECL1Q8N7X8 197 aa14.18□□□□□ -0.14
VIM-209ENST00000544301 TBX15Q96SF7 602 aa14.18□□□□□ -0.14
VIM-209ENST00000544301 SIRPDQ9H106 197 aa14.18□□□□□ -0.14
VIM-209ENST00000544301 SPTBN1Q01082 2364 aaKnown RBP14.18□□□□□ -0.14
VIM-209ENST00000544301 TRAV8-1A0A0A6YYK1 113 aa14.18□□□□□ -0.14
VIM-209ENST00000544301 IGLV2-11P01706 119 aa14.18□□□□□ -0.14
VIM-209ENST00000544301 IGLC2P0DOY2 106 aa14.18□□□□□ -0.14
VIM-209ENST00000544301 GOLT1AQ6ZVE7 132 aa14.18□□□□□ -0.14
VIM-209ENST00000544301 TCF24Q7RTU0 167 aa14.18□□□□□ -0.14
VIM-209ENST00000544301 OR4F17Q8NGA8 305 aa14.18□□□□□ -0.14
VIM-209ENST00000544301 KCNS1Q96KK3 526 aa14.18□□□□□ -0.14
VIM-209ENST00000544301 C17orf77Q96MU5 243 aa14.18□□□□□ -0.14
VIM-209ENST00000544301 HIVEP3Q5T1R4 2406 aa14.18□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 36.8 ms