RNA–Protein interactions for RNA: ENST00000540438.5

USP28-208, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 2

Gene USP28, Length 3,015 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-208ENST00000540438 PTPN13Q12923 2485 aa13.43□□□□□ -0.26
USP28-208ENST00000540438 LGALS7P47929 136 aa13.43□□□□□ -0.26
USP28-208ENST00000540438 TMEM68Q96MH6 324 aa13.43□□□□□ -0.26
USP28-208ENST00000540438 MSRB2Q9Y3D2 182 aa13.43□□□□□ -0.26
USP28-208ENST00000540438 FSTL3O95633 263 aa13.42□□□□□ -0.26
USP28-208ENST00000540438 NHLH1Q02575 133 aa13.42□□□□□ -0.26
USP28-208ENST00000540438 ZNF600Q6ZNG1 722 aa13.42□□□□□ -0.26
USP28-208ENST00000540438 GOLT1AQ6ZVE7 132 aa13.42□□□□□ -0.26
USP28-208ENST00000540438 RNASEH2CQ8TDP1 164 aaKnown RBP13.42□□□□□ -0.26
USP28-208ENST00000540438 ZNF462Q96JM2 2506 aa13.42□□□□□ -0.26
USP28-208ENST00000540438 A0A1W2PRE2 83 aa13.42□□□□□ -0.26
USP28-208ENST00000540438 C9JCJ5 164 aa13.42□□□□□ -0.26
USP28-208ENST00000540438 PRNTQ86SH4 94 aa13.42□□□□□ -0.26
USP28-208ENST00000540438 LINC00311Q8N616 119 aa13.42□□□□□ -0.26
USP28-208ENST00000540438 LINC00527Q9UJ94 153 aa13.42□□□□□ -0.26
USP28-208ENST00000540438 TMSB15BA0A087X1C1 80 aa13.42□□□□□ -0.26
USP28-208ENST00000540438 HTR1DP28221 377 aa13.42□□□□□ -0.26
USP28-208ENST00000540438 PKIAP61925 76 aa13.42□□□□□ -0.26
USP28-208ENST00000540438 IGHV3-49A0A0A0MS15 119 aa13.41□□□□□ -0.26
USP28-208ENST00000540438 IGHV3-66A0A0C4DH42 116 aa13.41□□□□□ -0.26
USP28-208ENST00000540438 HIGD1CA8MV81 97 aa13.41□□□□□ -0.26
USP28-208ENST00000540438 GATCO43716 136 aaKnown RBP13.41□□□□□ -0.26
USP28-208ENST00000540438 PGLYRP4Q96LB8 373 aa13.41□□□□□ -0.26
USP28-208ENST00000540438 TXNDC17Q9BRA2 123 aa13.41□□□□□ -0.26
USP28-208ENST00000540438 Q9H3A6 140 aa13.41□□□□□ -0.26
USP28-208ENST00000540438 CDC42EP3Q9UKI2 254 aa13.41□□□□□ -0.26
USP28-208ENST00000540438 LIPFP07098 398 aa13.41□□□□□ -0.26
USP28-208ENST00000540438 FCGR2BP31994 310 aaPredicted RBP13.41□□□□□ -0.26
USP28-208ENST00000540438 NDPQ00604 133 aa13.41□□□□□ -0.26
USP28-208ENST00000540438 BATFQ16520 125 aa13.41□□□□□ -0.26
USP28-208ENST00000540438 TMEM136Q6ZRR5 245 aa13.41□□□□□ -0.26
USP28-208ENST00000540438 OR1L4Q8NGR5 311 aa13.41□□□□□ -0.26
USP28-208ENST00000540438 OR5R1Q8NH85 324 aa13.41□□□□□ -0.26
USP28-208ENST00000540438 NEU1Q99519 415 aa13.41□□□□□ -0.26
USP28-208ENST00000540438 RASL11BQ9BPW5 248 aa13.41□□□□□ -0.26
USP28-208ENST00000540438 POLR3KQ9Y2Y1 108 aaPredicted RBP13.41□□□□□ -0.26
USP28-208ENST00000540438 GCGP01275 180 aa13.4□□□□□ -0.26
USP28-208ENST00000540438 IL4P05112 153 aa13.4□□□□□ -0.26
USP28-208ENST00000540438 AMTP48728 403 aa13.4□□□□□ -0.26
USP28-208ENST00000540438 C22orf15Q8WYQ4 148 aa13.4□□□□□ -0.26
USP28-208ENST00000540438 RBM14Q96PK6 669 aaKnown RBP13.4□□□□□ -0.26
USP28-208ENST00000540438 F11RQ9Y624 299 aaKnown RBP13.4□□□□□ -0.26
USP28-208ENST00000540438 LOC105371242A0A075B767 164 aa13.4□□□□□ -0.26
USP28-208ENST00000540438 BMPR1BO00238 502 aa13.4□□□□□ -0.26
USP28-208ENST00000540438 NUP35Q8NFH5 326 aa13.4□□□□□ -0.26
USP28-208ENST00000540438 MCRIP2Q9BUT9 160 aaKnown RBP13.4□□□□□ -0.26
USP28-208ENST00000540438 EPDR1Q9UM22 224 aa13.4□□□□□ -0.26
USP28-208ENST00000540438 PDLIM4P50479 330 aa13.39□□□□□ -0.27
USP28-208ENST00000540438 ZNF138P52744 262 aa13.39□□□□□ -0.27
USP28-208ENST00000540438 YPEL3P61236 119 aaPredicted RBP13.39□□□□□ -0.27
USP28-208ENST00000540438 COA6Q5JTJ3 125 aaKnown RBP13.39□□□□□ -0.27
USP28-208ENST00000540438 FAM120AOSQ5T036 256 aa13.39□□□□□ -0.27
USP28-208ENST00000540438 LCN12Q6JVE5 192 aa13.39□□□□□ -0.27
USP28-208ENST00000540438 PERPQ96FX8 193 aa13.39□□□□□ -0.27
USP28-208ENST00000540438 RAB1BQ9H0U4 201 aa13.39□□□□□ -0.27
USP28-208ENST00000540438 ZNF586Q9NXT0 402 aa13.39□□□□□ -0.27
USP28-208ENST00000540438 NAGKQ9UJ70 344 aa13.39□□□□□ -0.27
USP28-208ENST00000540438 EREGO14944 169 aa13.39□□□□□ -0.27
USP28-208ENST00000540438 IGKV1-17P01599 117 aa13.39□□□□□ -0.27
USP28-208ENST00000540438 CX3CL1P78423 397 aa13.39□□□□□ -0.27
USP28-208ENST00000540438 KLRB1Q12918 225 aa13.39□□□□□ -0.27
USP28-208ENST00000540438 TEX45Q8NA69 505 aa13.39□□□□□ -0.27
USP28-208ENST00000540438 SONP18583 2426 aaKnown RBP13.39□□□□□ -0.27
USP28-208ENST00000540438 OR2J3O76001 311 aa13.39□□□□□ -0.27
USP28-208ENST00000540438 IGLC1P0CG04 106 aa13.39□□□□□ -0.27
USP28-208ENST00000540438 MAJINQ3KP22 176 aa13.39□□□□□ -0.27
USP28-208ENST00000540438 ZNF331Q9NQX6 463 aaPredicted RBP13.39□□□□□ -0.27
USP28-208ENST00000540438 FBXL7Q9UJT9 491 aa13.39□□□□□ -0.27
USP28-208ENST00000540438 H0Y8G0 127 aa13.38□□□□□ -0.27
USP28-208ENST00000540438 C19orf84I3L1E1 186 aa13.38□□□□□ -0.27
USP28-208ENST00000540438 TMEM30BQ3MIR4 351 aa13.38□□□□□ -0.27
USP28-208ENST00000540438 TPTE2P1Q5T6R2 138 aa13.38□□□□□ -0.27
USP28-208ENST00000540438 ZNF705AQ6ZN79 300 aaPredicted RBP13.38□□□□□ -0.27
USP28-208ENST00000540438 NOL4LQ96MY1 436 aaPredicted RBP13.38□□□□□ -0.27
USP28-208ENST00000540438 MRPL32Q9BYC8 188 aaKnown RBP13.38□□□□□ -0.27
USP28-208ENST00000540438 OR2T8A6NH00 312 aa13.38□□□□□ -0.27
USP28-208ENST00000540438 CRYGBP07316 175 aa13.38□□□□□ -0.27
USP28-208ENST00000540438 VMO1Q7Z5L0 202 aa13.38□□□□□ -0.27
USP28-208ENST00000540438 SLC25A39Q9BZJ4 359 aaPredicted RBP13.38□□□□□ -0.27
USP28-208ENST00000540438 DPM3Q9P2X0 92 aa13.38□□□□□ -0.27
USP28-208ENST00000540438 TP73-AS1Q9UF72 201 aa13.38□□□□□ -0.27
USP28-208ENST00000540438 HIGD1AQ9Y241 93 aa13.38□□□□□ -0.27
USP28-208ENST00000540438 TBL2Q9Y4P3 447 aaKnown RBP13.38□□□□□ -0.27
USP28-208ENST00000540438 SORL1Q92673 2214 aa13.38□□□□□ -0.27
USP28-208ENST00000540438 FNDC10F2Z333 226 aa13.37□□□□□ -0.27
USP28-208ENST00000540438 A8MWP6 167 aa13.37□□□□□ -0.27
USP28-208ENST00000540438 AMY1AP04745 511 aa13.37□□□□□ -0.27
USP28-208ENST00000540438 THAP8Q8NA92 274 aa13.37□□□□□ -0.27
USP28-208ENST00000540438 OR4A5Q8NH83 315 aa13.37□□□□□ -0.27
USP28-208ENST00000540438 ZNF596Q8TC21 504 aa13.37□□□□□ -0.27
USP28-208ENST00000540438 SOX21Q9Y651 276 aaPredicted RBP13.37□□□□□ -0.27
USP28-208ENST00000540438 LINC01548A6NM66 108 aa13.37□□□□□ -0.27
USP28-208ENST00000540438 APCSP02743 223 aa13.37□□□□□ -0.27
USP28-208ENST00000540438 TIMD4Q96H15 378 aa13.37□□□□□ -0.27
USP28-208ENST00000540438 CCDC168Q8NDH2 2452 aa13.36□□□□□ -0.27
USP28-208ENST00000540438 MYO9AB2RTY4 2548 aa13.36□□□□□ -0.27
USP28-208ENST00000540438 K7EIM0 57 aa13.36□□□□□ -0.27
USP28-208ENST00000540438 CSN3P07498 182 aa13.36□□□□□ -0.27
USP28-208ENST00000540438 ECSCRQ19T08 205 aa13.36□□□□□ -0.27
USP28-208ENST00000540438 OSTCQ9NRP0 149 aa13.36□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 86.5 ms