RNA–Protein interactions for RNA: ENST00000540010.1

TRAF1-202, Transcript of TNF receptor associated factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TRAF1, Length 4,303 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAF1-202ENST00000540010 PRELID3AQ96N28 172 aa8.17□□□□□ -1.1
TRAF1-202ENST00000540010 MCRIP2Q9BUT9 160 aaKnown RBP8.17□□□□□ -1.1
TRAF1-202ENST00000540010 CFAP47Q6ZTR5 3102 aa8.17□□□□□ -1.1
TRAF1-202ENST00000540010 TRBV20OR9-2A0A075B6H5 130 aa8.17□□□□□ -1.1
TRAF1-202ENST00000540010 A1L4Q6 167 aa8.17□□□□□ -1.1
TRAF1-202ENST00000540010 IGKV1D-33P01593 117 aa8.17□□□□□ -1.1
TRAF1-202ENST00000540010 IGKV1-33P01594 117 aa8.17□□□□□ -1.1
TRAF1-202ENST00000540010 RPL13AP40429 203 aaKnown RBP8.17□□□□□ -1.1
TRAF1-202ENST00000540010 ALKBH7Q9BT30 221 aaPredicted RBP8.17□□□□□ -1.1
TRAF1-202ENST00000540010 RALYQ9UKM9 306 aaKnown RBP8.17□□□□□ -1.1
TRAF1-202ENST00000540010 ASPMQ8IZT6 3477 aa8.17□□□□□ -1.1
TRAF1-202ENST00000540010 LOXL3P58215 753 aa8.17□□□□□ -1.1
TRAF1-202ENST00000540010 KLRB1Q12918 225 aa8.17□□□□□ -1.1
TRAF1-202ENST00000540010 C22orf34Q6ZV56 151 aa8.17□□□□□ -1.1
TRAF1-202ENST00000540010 OR1N2Q8NGR9 330 aa8.17□□□□□ -1.1
TRAF1-202ENST00000540010 GNB1LQ9BYB4 327 aa8.17□□□□□ -1.1
TRAF1-202ENST00000540010 MBNL3Q9NUK0 354 aaKnown RBP8.17□□□□□ -1.1
TRAF1-202ENST00000540010 TRAV9-1A0A075B6T8 112 aa8.16□□□□□ -1.1
TRAF1-202ENST00000540010 A8MWP6 167 aa8.16□□□□□ -1.1
TRAF1-202ENST00000540010 IGHV1-46P01743 117 aa8.16□□□□□ -1.1
TRAF1-202ENST00000540010 LMO1P25800 156 aa8.16□□□□□ -1.1
TRAF1-202ENST00000540010 CX3CL1P78423 397 aa8.16□□□□□ -1.1
TRAF1-202ENST00000540010 ZNF726P1Q15940 193 aa8.16□□□□□ -1.1
TRAF1-202ENST00000540010 C3orf36Q3SXR2 165 aa8.16□□□□□ -1.1
TRAF1-202ENST00000540010 RBPMS2Q6ZRY4 209 aaKnown RBP8.16□□□□□ -1.1
TRAF1-202ENST00000540010 NAA38Q9BRA0 125 aaKnown RBP8.16□□□□□ -1.1
TRAF1-202ENST00000540010 PEF1Q9UBV8 284 aaKnown RBP8.16□□□□□ -1.1
TRAF1-202ENST00000540010 EPDR1Q9UM22 224 aa8.16□□□□□ -1.1
TRAF1-202ENST00000540010 RNF115Q9Y4L5 304 aa8.16□□□□□ -1.1
TRAF1-202ENST00000540010 MYO18BQ8IUG5 2567 aa8.16□□□□□ -1.1
TRAF1-202ENST00000540010 TRAV9-2A0A087WT02 112 aa8.16□□□□□ -1.1
TRAF1-202ENST00000540010 ACTL10Q5JWF8 245 aa8.16□□□□□ -1.1
TRAF1-202ENST00000540010 VKORC1Q9BQB6 163 aa8.16□□□□□ -1.1
TRAF1-202ENST00000540010 DLEU1O43261 78 aa8.16□□□□□ -1.1
TRAF1-202ENST00000540010 IGKV1-39P01597 117 aa8.16□□□□□ -1.1
TRAF1-202ENST00000540010 IGKV1D-39P04432 117 aa8.16□□□□□ -1.1
TRAF1-202ENST00000540010 LINC00614P0C842 121 aa8.16□□□□□ -1.1
TRAF1-202ENST00000540010 DMRTC2Q8IXT2 367 aaPredicted RBP8.16□□□□□ -1.1
TRAF1-202ENST00000540010 ZNF436-AS1Q8NC38 126 aaPredicted RBP8.16□□□□□ -1.1
TRAF1-202ENST00000540010 NUDT10Q8NFP7 164 aa8.16□□□□□ -1.1
TRAF1-202ENST00000540010 NUDT11Q96G61 164 aa8.16□□□□□ -1.1
TRAF1-202ENST00000540010 SPTBN4Q9H254 2564 aa8.16□□□□□ -1.1
TRAF1-202ENST00000540010 DSPP15924 2871 aaKnown RBP8.16□□□□□ -1.1
TRAF1-202ENST00000540010 C3orf79P0CE67 100 aa8.15□□□□□ -1.1
TRAF1-202ENST00000540010 HERVK_113P61574 105 aa8.15□□□□□ -1.1
TRAF1-202ENST00000540010 PRCDQ00LT1 54 aa8.15□□□□□ -1.1
TRAF1-202ENST00000540010 SPRNQ5BIV9 151 aa8.15□□□□□ -1.1
TRAF1-202ENST00000540010 LDLRAD2Q5SZI1 272 aa8.15□□□□□ -1.1
TRAF1-202ENST00000540010 TEX45Q8NA69 505 aa8.15□□□□□ -1.1
TRAF1-202ENST00000540010 IGKV1D-17A0A075B6S4 117 aa8.15□□□□□ -1.1
TRAF1-202ENST00000540010 PF4V1P10720 104 aa8.15□□□□□ -1.1
TRAF1-202ENST00000540010 PPIFP30405 207 aaKnown RBP8.15□□□□□ -1.1
TRAF1-202ENST00000540010 ZNF138P52744 262 aa8.15□□□□□ -1.1
TRAF1-202ENST00000540010 FAM90A1Q86YD7 464 aa8.15□□□□□ -1.1
TRAF1-202ENST00000540010 LURAP1LQ8IV03 231 aa8.15□□□□□ -1.1
TRAF1-202ENST00000540010 BEND2Q8NDZ0 799 aa8.15□□□□□ -1.1
TRAF1-202ENST00000540010 PLA2G2EQ9NZK7 142 aa8.15□□□□□ -1.1
TRAF1-202ENST00000540010 NCOR2Q9Y618 2525 aa8.15□□□□□ -1.1
TRAF1-202ENST00000540010 IGHV3OR16-10A0A075B7F0 116 aa8.15□□□□□ -1.11
TRAF1-202ENST00000540010 TRAV8-1A0A0A6YYK1 113 aa8.15□□□□□ -1.11
TRAF1-202ENST00000540010 NPIPB11E5RHQ5 1161 aa8.15□□□□□ -1.11
TRAF1-202ENST00000540010 H3BUT2 72 aa8.15□□□□□ -1.11
TRAF1-202ENST00000540010 PRSS2P07478 247 aa8.15□□□□□ -1.11
TRAF1-202ENST00000540010 PET117Q6UWS5 81 aa8.15□□□□□ -1.11
TRAF1-202ENST00000540010 PHLDA3Q9Y5J5 127 aa8.15□□□□□ -1.11
TRAF1-202ENST00000540010 LINC00312Q9Y6C7 94 aa8.15□□□□□ -1.11
TRAF1-202ENST00000540010 IGLV3-9A0A075B6K5 115 aa8.15□□□□□ -1.11
TRAF1-202ENST00000540010 C17orf100A8MU93 164 aa8.15□□□□□ -1.11
TRAF1-202ENST00000540010 SFTA2Q6UW10 78 aa8.15□□□□□ -1.11
TRAF1-202ENST00000540010 ZNRD1Q9P1U0 126 aa8.15□□□□□ -1.11
TRAF1-202ENST00000540010 M0R381 172 aa8.14□□□□□ -1.11
TRAF1-202ENST00000540010 RNASEH2CQ8TDP1 164 aaKnown RBP8.14□□□□□ -1.11
TRAF1-202ENST00000540010 C2orf88Q9BSF0 95 aa8.14□□□□□ -1.11
TRAF1-202ENST00000540010 SNHG12Q9BXW3 62 aa8.14□□□□□ -1.11
TRAF1-202ENST00000540010 ANKHD1Q8IWZ3 2542 aaKnown RBP8.14□□□□□ -1.11
TRAF1-202ENST00000540010 FXYD7P58549 80 aa8.14□□□□□ -1.11
TRAF1-202ENST00000540010 FNDC4Q9H6D8 234 aaPredicted RBP8.14□□□□□ -1.11
TRAF1-202ENST00000540010 LYRM7Q5U5X0 104 aa8.14□□□□□ -1.11
TRAF1-202ENST00000540010 NUP37Q8NFH4 326 aa8.14□□□□□ -1.11
TRAF1-202ENST00000540010 TCRBV4S1A1TA0A5B7 111 aa8.13□□□□□ -1.11
TRAF1-202ENST00000540010 IGKV3-20P01619 116 aa8.13□□□□□ -1.11
TRAF1-202ENST00000540010 IGKV1-16P04430 117 aa8.13□□□□□ -1.11
TRAF1-202ENST00000540010 CDKN1AP38936 164 aa8.13□□□□□ -1.11
TRAF1-202ENST00000540010 ADIPOQQ15848 244 aa8.13□□□□□ -1.11
TRAF1-202ENST00000540010 FAM74A4Q5TZK3 123 aa8.13□□□□□ -1.11
TRAF1-202ENST00000540010 EXOC3-AS1Q8N2X6 119 aa8.13□□□□□ -1.11
TRAF1-202ENST00000540010 METTL26Q96S19 204 aa8.13□□□□□ -1.11
TRAF1-202ENST00000540010 FAM106CPP0CH98 169 aa8.13□□□□□ -1.11
TRAF1-202ENST00000540010 FBLN7Q53RD9 439 aa8.13□□□□□ -1.11
TRAF1-202ENST00000540010 ASPHD1Q5U4P2 390 aa8.13□□□□□ -1.11
TRAF1-202ENST00000540010 PPP1R27Q86WC6 154 aa8.13□□□□□ -1.11
TRAF1-202ENST00000540010 ZNF114Q8NC26 417 aa8.13□□□□□ -1.11
TRAF1-202ENST00000540010 ASCL2Q99929 193 aa8.13□□□□□ -1.11
TRAF1-202ENST00000540010 hDV102S1A0JD36 115 aa8.13□□□□□ -1.11
TRAF1-202ENST00000540010 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP8.13□□□□□ -1.11
TRAF1-202ENST00000540010 GPX1P07203 203 aa8.13□□□□□ -1.11
TRAF1-202ENST00000540010 SAPCD1Q5SSQ6 148 aa8.13□□□□□ -1.11
TRAF1-202ENST00000540010 RPUSD1Q9UJJ7 312 aaKnown RBP8.13□□□□□ -1.11
TRAF1-202ENST00000540010 POLR3KQ9Y2Y1 108 aaPredicted RBP8.13□□□□□ -1.11
TRAF1-202ENST00000540010 AREGP15514 252 aa8.12□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms