RNA–Protein interactions for RNA: ENST00000539522.2

CCDC42-202, Transcript of coiled-coil domain containing 42, humanhuman

TSL 1 (best) BASIC

Gene CCDC42, Length 1,087 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC42-202ENST00000539522 SCGB2A1O75556 95 aa9.86□□□□□ -0.83
CCDC42-202ENST00000539522 LINC00869P0C866 280 aa9.86□□□□□ -0.83
CCDC42-202ENST00000539522 CD33P20138 364 aa9.86□□□□□ -0.83
CCDC42-202ENST00000539522 M6PRP20645 277 aa9.86□□□□□ -0.83
CCDC42-202ENST00000539522 KRTAP10-11P60412 298 aa9.86□□□□□ -0.83
CCDC42-202ENST00000539522 PRR20EP86478 221 aa9.86□□□□□ -0.83
CCDC42-202ENST00000539522 PRR20CP86479 221 aa9.86□□□□□ -0.83
CCDC42-202ENST00000539522 PRR20DP86480 221 aa9.86□□□□□ -0.83
CCDC42-202ENST00000539522 PRR20BP86481 221 aa9.86□□□□□ -0.83
CCDC42-202ENST00000539522 PRR20AP86496 221 aa9.86□□□□□ -0.83
CCDC42-202ENST00000539522 MIC13Q5XKP0 118 aa9.86□□□□□ -0.83
CCDC42-202ENST00000539522 OR10G4Q8NGN3 311 aa9.86□□□□□ -0.83
CCDC42-202ENST00000539522 OR10G9Q8NGN4 311 aa9.86□□□□□ -0.83
CCDC42-202ENST00000539522 OR10G7Q8NGN6 311 aa9.86□□□□□ -0.83
CCDC42-202ENST00000539522 OR9G4Q8NGQ1 327 aa9.86□□□□□ -0.83
CCDC42-202ENST00000539522 FAM213BQ8TBF2 198 aa9.86□□□□□ -0.83
CCDC42-202ENST00000539522 PCNPQ8WW12 178 aaKnown RBP9.86□□□□□ -0.83
CCDC42-202ENST00000539522 TMEM190Q8WZ59 177 aa9.86□□□□□ -0.83
CCDC42-202ENST00000539522 ACTR3CQ9C0K3 210 aaPredicted RBP9.86□□□□□ -0.83
CCDC42-202ENST00000539522 FBN3Q75N90 2809 aa9.86□□□□□ -0.83
CCDC42-202ENST00000539522 TEX46H3BTG2 121 aa9.85□□□□□ -0.83
CCDC42-202ENST00000539522 NUPL2O15504 423 aaKnown RBP9.85□□□□□ -0.83
CCDC42-202ENST00000539522 H2AFB1P0C5Y9 115 aa9.85□□□□□ -0.83
CCDC42-202ENST00000539522 FHITP49789 147 aa9.85□□□□□ -0.83
CCDC42-202ENST00000539522 ELLP55199 621 aaPredicted RBP9.85□□□□□ -0.83
CCDC42-202ENST00000539522 RAB2AP61019 212 aa9.85□□□□□ -0.83
CCDC42-202ENST00000539522 B2MP61769 119 aa9.85□□□□□ -0.83
CCDC42-202ENST00000539522 ZNF90Q03938 601 aa9.85□□□□□ -0.83
CCDC42-202ENST00000539522 TM4SF20Q53R12 229 aa9.85□□□□□ -0.83
CCDC42-202ENST00000539522 PXDC1Q5TGL8 231 aa9.85□□□□□ -0.83
CCDC42-202ENST00000539522 TOMM20LQ6UXN7 152 aa9.85□□□□□ -0.83
CCDC42-202ENST00000539522 STPG3Q8N7X2 389 aa9.85□□□□□ -0.83
CCDC42-202ENST00000539522 BPIFCQ8NFQ6 507 aa9.85□□□□□ -0.83
CCDC42-202ENST00000539522 LYPD6BQ8NI32 183 aa9.85□□□□□ -0.83
CCDC42-202ENST00000539522 MBD3L1Q8WWY6 194 aa9.85□□□□□ -0.83
CCDC42-202ENST00000539522 VSIRQ9H7M9 311 aa9.85□□□□□ -0.83
CCDC42-202ENST00000539522 PFDN2Q9UHV9 154 aa9.85□□□□□ -0.83
CCDC42-202ENST00000539522 SELENOKQ9Y6D0 94 aa9.85□□□□□ -0.83
CCDC42-202ENST00000539522 NOTCH3Q9UM47 2321 aa9.84□□□□□ -0.83
CCDC42-202ENST00000539522 TRAV1-1A0A0B4J248 108 aa9.84□□□□□ -0.83
CCDC42-202ENST00000539522 A0A1W2PPV4 95 aa9.84□□□□□ -0.83
CCDC42-202ENST00000539522 C2orf70A6NJV1 201 aa9.84□□□□□ -0.83
CCDC42-202ENST00000539522 SEC14L6B5MCN3 397 aa9.84□□□□□ -0.83
CCDC42-202ENST00000539522 NDUFA4O00483 81 aa9.84□□□□□ -0.83
CCDC42-202ENST00000539522 YIF1AO95070 293 aa9.84□□□□□ -0.83
CCDC42-202ENST00000539522 HBE1P02100 147 aa9.84□□□□□ -0.83
CCDC42-202ENST00000539522 APOHP02749 345 aaPredicted RBP9.84□□□□□ -0.83
CCDC42-202ENST00000539522 C8orf88P0DMB2 117 aa9.84□□□□□ -0.83
CCDC42-202ENST00000539522 BEAN1Q3B7T3 259 aa9.84□□□□□ -0.83
CCDC42-202ENST00000539522 KPRPQ5T749 579 aaPredicted RBP9.84□□□□□ -0.83
CCDC42-202ENST00000539522 SLC7A5P1Q8MH63 180 aa9.84□□□□□ -0.83
CCDC42-202ENST00000539522 RPP25LQ8N5L8 163 aaKnown RBP9.84□□□□□ -0.83
CCDC42-202ENST00000539522 MARC2Q969Z3 335 aa9.84□□□□□ -0.83
CCDC42-202ENST00000539522 HRH4Q9H3N8 390 aa9.84□□□□□ -0.83
CCDC42-202ENST00000539522 DNAJC4Q9NNZ3 241 aa9.84□□□□□ -0.83
CCDC42-202ENST00000539522 PRKDCP78527 4128 aaKnown RBP9.84□□□□□ -0.83
CCDC42-202ENST00000539522 ZNF207O43670 478 aaKnown RBP9.83□□□□□ -0.84
CCDC42-202ENST00000539522 RD3LP0DJH9 198 aa9.83□□□□□ -0.84
CCDC42-202ENST00000539522 YPEL3P61236 119 aaPredicted RBP9.83□□□□□ -0.84
CCDC42-202ENST00000539522 RELQ04864 619 aaPredicted RBP9.83□□□□□ -0.84
CCDC42-202ENST00000539522 ZNF600Q6ZNG1 722 aa9.83□□□□□ -0.84
CCDC42-202ENST00000539522 OR1L4Q8NGR5 311 aa9.83□□□□□ -0.84
CCDC42-202ENST00000539522 SFT2D1Q8WV19 159 aa9.83□□□□□ -0.84
CCDC42-202ENST00000539522 RNF2Q99496 336 aa9.83□□□□□ -0.84
CCDC42-202ENST00000539522 MLXQ9UH92 298 aa9.83□□□□□ -0.84
CCDC42-202ENST00000539522 PUS1Q9Y606 427 aaKnown RBP eCLIP9.83□□□□□ -0.84
CCDC42-202ENST00000539522 ELOA3CA0A087WX78 387 aaPredicted RBP9.82□□□□□ -0.84
CCDC42-202ENST00000539522 CTXND1A0A1B0GTU2 59 aa9.82□□□□□ -0.84
CCDC42-202ENST00000539522 IZUMO1RA6ND01 250 aa9.82□□□□□ -0.84
CCDC42-202ENST00000539522 IGLV1-51P01701 117 aa9.82□□□□□ -0.84
CCDC42-202ENST00000539522 PSG1P11464 419 aa9.82□□□□□ -0.84
CCDC42-202ENST00000539522 FOLR2P14207 255 aa9.82□□□□□ -0.84
CCDC42-202ENST00000539522 CBLN1P23435 193 aa9.82□□□□□ -0.84
CCDC42-202ENST00000539522 GATA2P23769 480 aaPredicted RBP9.82□□□□□ -0.84
CCDC42-202ENST00000539522 RHOBP62745 196 aa9.82□□□□□ -0.84
CCDC42-202ENST00000539522 EGFEM1PQ0D2K5 195 aa9.82□□□□□ -0.84
CCDC42-202ENST00000539522 USF2Q15853 346 aaPredicted RBP9.82□□□□□ -0.84
CCDC42-202ENST00000539522 Q8WTZ3 238 aa9.82□□□□□ -0.84
CCDC42-202ENST00000539522 GATAD1Q8WUU5 269 aa9.82□□□□□ -0.84
CCDC42-202ENST00000539522 SIGLEC8Q9NYZ4 499 aa9.82□□□□□ -0.84
CCDC42-202ENST00000539522 WI2-2373I1.2A0A1W2PRP0 233 aa9.81□□□□□ -0.84
CCDC42-202ENST00000539522 ZNF320A2RRD8 509 aa9.81□□□□□ -0.84
CCDC42-202ENST00000539522 RAB19A4D1S5 217 aa9.81□□□□□ -0.84
CCDC42-202ENST00000539522 TOMM40O96008 361 aa9.81□□□□□ -0.84
CCDC42-202ENST00000539522 PLP1P60201 277 aa9.81□□□□□ -0.84
CCDC42-202ENST00000539522 FAM106AQ4KMX7 169 aa9.81□□□□□ -0.84
CCDC42-202ENST00000539522 FAM122CQ6P4D5 195 aa9.81□□□□□ -0.84
CCDC42-202ENST00000539522 COMMD7Q86VX2 200 aa9.81□□□□□ -0.84
CCDC42-202ENST00000539522 RAB24Q969Q5 203 aa9.81□□□□□ -0.84
CCDC42-202ENST00000539522 PFDN5Q99471 154 aa9.81□□□□□ -0.84
CCDC42-202ENST00000539522 IGHV3-49A0A0A0MS15 119 aa9.8□□□□□ -0.84
CCDC42-202ENST00000539522 K7EMT4 169 aa9.8□□□□□ -0.84
CCDC42-202ENST00000539522 COX7A2P2O60397 106 aa9.8□□□□□ -0.84
CCDC42-202ENST00000539522 HYPMO75409 117 aa9.8□□□□□ -0.84
CCDC42-202ENST00000539522 SAP30O75446 220 aa9.8□□□□□ -0.84
CCDC42-202ENST00000539522 CDC34P49427 236 aaPredicted RBP9.8□□□□□ -0.84
CCDC42-202ENST00000539522 PMS2P11Q13670 270 aa9.8□□□□□ -0.84
CCDC42-202ENST00000539522 ZNF726P1Q15940 193 aa9.8□□□□□ -0.84
CCDC42-202ENST00000539522 GCSAMLQ5JQS6 135 aa9.8□□□□□ -0.84
CCDC42-202ENST00000539522 C9orf66Q5T8R8 295 aa9.8□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 50.1 ms