RNA–Protein interactions for RNA: ENST00000539504.5

SYNE1-237, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 3,768 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-237ENST00000539504 IGLV3-9A0A075B6K5 115 aa9.03□□□□□ -0.96
SYNE1-237ENST00000539504 PRB3Q04118 309 aaPredicted RBP9.03□□□□□ -0.96
SYNE1-237ENST00000539504 TMEM200BQ69YZ2 307 aa9.03□□□□□ -0.96
SYNE1-237ENST00000539504 PET117Q6UWS5 81 aa9.03□□□□□ -0.96
SYNE1-237ENST00000539504 THAP8Q8NA92 274 aa9.03□□□□□ -0.96
SYNE1-237ENST00000539504 CST9LQ9H4G1 147 aa9.03□□□□□ -0.96
SYNE1-237ENST00000539504 AP5S1Q9NUS5 200 aa9.03□□□□□ -0.96
SYNE1-237ENST00000539504 SERTM2A0A1B0GWG4 89 aa9.03□□□□□ -0.96
SYNE1-237ENST00000539504 CGB1A6NKQ9 187 aa9.03□□□□□ -0.96
SYNE1-237ENST00000539504 RBP4P02753 201 aa9.03□□□□□ -0.96
SYNE1-237ENST00000539504 TNFRSF1AP19438 455 aa9.03□□□□□ -0.96
SYNE1-237ENST00000539504 MYCNOSP40205 109 aa9.03□□□□□ -0.96
SYNE1-237ENST00000539504 BPIFA4PQ86YQ2 179 aa9.03□□□□□ -0.96
SYNE1-237ENST00000539504 FAM169BQ8N8A8 192 aa9.03□□□□□ -0.96
SYNE1-237ENST00000539504 ZC2HC1AQ96GY0 325 aa9.03□□□□□ -0.96
SYNE1-237ENST00000539504 MLST8Q9BVC4 326 aa9.03□□□□□ -0.96
SYNE1-237ENST00000539504 HIGD1AQ9Y241 93 aa9.03□□□□□ -0.96
SYNE1-237ENST00000539504 RPL27AP46776 148 aaKnown RBP9.02□□□□□ -0.96
SYNE1-237ENST00000539504 SEM1Q6ZVN7 128 aa9.02□□□□□ -0.96
SYNE1-237ENST00000539504 OR8A1Q8NGG7 326 aa9.02□□□□□ -0.96
SYNE1-237ENST00000539504 RITA1Q96K30 269 aa9.02□□□□□ -0.96
SYNE1-237ENST00000539504 KLF12Q9Y4X4 402 aa9.02□□□□□ -0.96
SYNE1-237ENST00000539504 MUC3AQ02505 3323 aa9.02□□□□□ -0.96
SYNE1-237ENST00000539504 DYSFO75923 2080 aa9.02□□□□□ -0.97
SYNE1-237ENST00000539504 LOC389332A0A1B0GUA5 103 aa9.02□□□□□ -0.97
SYNE1-237ENST00000539504 NDUFB3O43676 98 aa9.02□□□□□ -0.97
SYNE1-237ENST00000539504 GPR183P32249 361 aa9.02□□□□□ -0.97
SYNE1-237ENST00000539504 LTAP01374 205 aa9.02□□□□□ -0.97
SYNE1-237ENST00000539504 PSG9Q00887 426 aa9.02□□□□□ -0.97
SYNE1-237ENST00000539504 WFDC8Q8IUA0 241 aa9.02□□□□□ -0.97
SYNE1-237ENST00000539504 DEFB125Q8N687 156 aa9.02□□□□□ -0.97
SYNE1-237ENST00000539504 TMEM186Q96B77 213 aa9.02□□□□□ -0.97
SYNE1-237ENST00000539504 PRSS22Q9GZN4 317 aa9.02□□□□□ -0.97
SYNE1-237ENST00000539504 LOC400499M0QZD8 3231 aa9.02□□□□□ -0.97
SYNE1-237ENST00000539504 PPIAL4DF5H284 164 aa9.01□□□□□ -0.97
SYNE1-237ENST00000539504 S100A7P31151 101 aa9.01□□□□□ -0.97
SYNE1-237ENST00000539504 CT83Q5H943 113 aa9.01□□□□□ -0.97
SYNE1-237ENST00000539504 ARL6IP6Q8N6S5 226 aa9.01□□□□□ -0.97
SYNE1-237ENST00000539504 OR4A5Q8NH83 315 aa9.01□□□□□ -0.97
SYNE1-237ENST00000539504 ZNF492Q9P255 531 aa9.01□□□□□ -0.97
SYNE1-237ENST00000539504 TANC2Q9HCD6 1990 aa9.01□□□□□ -0.97
SYNE1-237ENST00000539504 A0A1B0GUT8 65 aa9.01□□□□□ -0.97
SYNE1-237ENST00000539504 C19orf71A6NCJ1 209 aa9.01□□□□□ -0.97
SYNE1-237ENST00000539504 CRXO43186 299 aaPredicted RBP9.01□□□□□ -0.97
SYNE1-237ENST00000539504 FSTL3O95633 263 aa9.01□□□□□ -0.97
SYNE1-237ENST00000539504 CSN1S1P47710 185 aa9.01□□□□□ -0.97
SYNE1-237ENST00000539504 HIST1H1AQ02539 215 aaPredicted RBP9.01□□□□□ -0.97
SYNE1-237ENST00000539504 OCIAD2Q56VL3 154 aa9.01□□□□□ -0.97
SYNE1-237ENST00000539504 TEX45Q8NA69 505 aa9.01□□□□□ -0.97
SYNE1-237ENST00000539504 NDFIP1Q9BT67 221 aa9.01□□□□□ -0.97
SYNE1-237ENST00000539504 PCNX1Q96RV3 2341 aa9.01□□□□□ -0.97
SYNE1-237ENST00000539504 TMSB15BA0A087X1C1 80 aa9.01□□□□□ -0.97
SYNE1-237ENST00000539504 ARMS2P0C7Q2 107 aa9.01□□□□□ -0.97
SYNE1-237ENST00000539504 CD40P25942 277 aa9.01□□□□□ -0.97
SYNE1-237ENST00000539504 NHLH1Q02575 133 aa9.01□□□□□ -0.97
SYNE1-237ENST00000539504 RIGQ13278 110 aa9.01□□□□□ -0.97
SYNE1-237ENST00000539504 ANKRD39Q53RE8 183 aa9.01□□□□□ -0.97
SYNE1-237ENST00000539504 Q86TA4 180 aa9.01□□□□□ -0.97
SYNE1-237ENST00000539504 SMIM12Q96EX1 92 aa9.01□□□□□ -0.97
SYNE1-237ENST00000539504 LINC00574Q9H8X3 128 aa9.01□□□□□ -0.97
SYNE1-237ENST00000539504 SCRT2Q9NQ03 307 aa9.01□□□□□ -0.97
SYNE1-237ENST00000539504 POLEQ07864 2286 aa9□□□□□ -0.97
SYNE1-237ENST00000539504 PPIAL4EA0A075B759 164 aa9□□□□□ -0.97
SYNE1-237ENST00000539504 PPIAL4FP0DN26 164 aa9□□□□□ -0.97
SYNE1-237ENST00000539504 MEF2CQ06413 473 aaPredicted RBP9□□□□□ -0.97
SYNE1-237ENST00000539504 PLGLAQ15195 96 aa9□□□□□ -0.97
SYNE1-237ENST00000539504 Q71RC1 249 aaPredicted RBP9□□□□□ -0.97
SYNE1-237ENST00000539504 TRGV9Q99603 122 aa9□□□□□ -0.97
SYNE1-237ENST00000539504 GP9P14770 177 aa9□□□□□ -0.97
SYNE1-237ENST00000539504 DLX1P56177 255 aa9□□□□□ -0.97
SYNE1-237ENST00000539504 C22orf34Q6ZV56 151 aa9□□□□□ -0.97
SYNE1-237ENST00000539504 SMIM15Q7Z3B0 74 aa9□□□□□ -0.97
SYNE1-237ENST00000539504 C8orf46Q8TAG6 207 aa9□□□□□ -0.97
SYNE1-237ENST00000539504 C7orf71A4D174 169 aa9□□□□□ -0.97
SYNE1-237ENST00000539504 MBD3L4A6NDZ8 208 aaPredicted RBP9□□□□□ -0.97
SYNE1-237ENST00000539504 MBD3L3A6NE82 208 aaPredicted RBP9□□□□□ -0.97
SYNE1-237ENST00000539504 MBD3L5A6NJ08 208 aaPredicted RBP9□□□□□ -0.97
SYNE1-237ENST00000539504 MBD3L2Q8NHZ7 208 aaPredicted RBP9□□□□□ -0.97
SYNE1-237ENST00000539504 GFRA4Q9GZZ7 299 aa9□□□□□ -0.97
SYNE1-237ENST00000539504 MS4A6AQ9H2W1 248 aa9□□□□□ -0.97
SYNE1-237ENST00000539504 C1RLQ9NZP8 487 aa9□□□□□ -0.97
SYNE1-237ENST00000539504 PEF1Q9UBV8 284 aaKnown RBP9□□□□□ -0.97
SYNE1-237ENST00000539504 C19orf67A6NJJ6 358 aa8.99□□□□□ -0.97
SYNE1-237ENST00000539504 CD5LO43866 347 aa8.99□□□□□ -0.97
SYNE1-237ENST00000539504 IGLV2-23P01705 113 aa8.99□□□□□ -0.97
SYNE1-237ENST00000539504 SP9P0CG40 484 aa8.99□□□□□ -0.97
SYNE1-237ENST00000539504 CNTFRP26992 372 aa8.99□□□□□ -0.97
SYNE1-237ENST00000539504 LYPD2Q6UXB3 125 aa8.99□□□□□ -0.97
SYNE1-237ENST00000539504 ZADH2Q8N4Q0 377 aa8.99□□□□□ -0.97
SYNE1-237ENST00000539504 OR10AG1Q8NH19 301 aa8.99□□□□□ -0.97
SYNE1-237ENST00000539504 NAA38Q9BRA0 125 aaKnown RBP8.99□□□□□ -0.97
SYNE1-237ENST00000539504 OTORQ9NRC9 128 aa8.99□□□□□ -0.97
SYNE1-237ENST00000539504 TRAV8-6A0A0B4J262 113 aa8.99□□□□□ -0.97
SYNE1-237ENST00000539504 GAGE12BA1L429 117 aa8.99□□□□□ -0.97
SYNE1-237ENST00000539504 GAGE10A6NGK3 116 aa8.99□□□□□ -0.97
SYNE1-237ENST00000539504 INS-IGF2F8WCM5 200 aa8.99□□□□□ -0.97
SYNE1-237ENST00000539504 MC5RP33032 325 aa8.99□□□□□ -0.97
SYNE1-237ENST00000539504 TMEM116Q8NCL8 245 aa8.99□□□□□ -0.97
SYNE1-237ENST00000539504 A0A1W2PRD5 423 aa8.99□□□□□ -0.97
SYNE1-237ENST00000539504 A0A1W2PRF3 423 aa8.99□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms