RNA–Protein interactions for RNA: ENST00000535896.6

SYNE1-233, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5

Gene SYNE1, Length 1,388 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-233ENST00000535896 ZNF355PQ9NSJ1 428 aa5.1□□□□□ -1.59
SYNE1-233ENST00000535896 SERTAD4Q9NUC0 356 aa5.1□□□□□ -1.59
SYNE1-233ENST00000535896 TMEM14CQ9P0S9 112 aa5.1□□□□□ -1.59
SYNE1-233ENST00000535896 RALYQ9UKM9 306 aaKnown RBP5.1□□□□□ -1.59
SYNE1-233ENST00000535896 FZR1Q9UM11 496 aa5.1□□□□□ -1.59
SYNE1-233ENST00000535896 TNCP24821 2201 aa5.1□□□□□ -1.59
SYNE1-233ENST00000535896 IGKV1D-37A0A075B6S9 117 aa5.09□□□□□ -1.59
SYNE1-233ENST00000535896 SRRM4A7MD48 611 aaKnown RBP5.09□□□□□ -1.59
SYNE1-233ENST00000535896 HIGD1CA8MV81 97 aa5.09□□□□□ -1.59
SYNE1-233ENST00000535896 NPIPB6E9PJ23 425 aa5.09□□□□□ -1.59
SYNE1-233ENST00000535896 M0R2Z0 102 aa5.09□□□□□ -1.59
SYNE1-233ENST00000535896 SPRY3O43610 288 aa5.09□□□□□ -1.59
SYNE1-233ENST00000535896 LTAP01374 205 aa5.09□□□□□ -1.59
SYNE1-233ENST00000535896 RBP4P02753 201 aa5.09□□□□□ -1.59
SYNE1-233ENST00000535896 G0S2P27469 103 aa5.09□□□□□ -1.59
SYNE1-233ENST00000535896 TSPOP30536 169 aa5.09□□□□□ -1.59
SYNE1-233ENST00000535896 GNG10P50151 68 aa5.09□□□□□ -1.59
SYNE1-233ENST00000535896 MFAP2P55001 183 aa5.09□□□□□ -1.59
SYNE1-233ENST00000535896 FXYD3Q14802 87 aa5.09□□□□□ -1.59
SYNE1-233ENST00000535896 TDRG1Q3Y452 100 aa5.09□□□□□ -1.59
SYNE1-233ENST00000535896 PET117Q6UWS5 81 aa5.09□□□□□ -1.59
SYNE1-233ENST00000535896 TMEM108Q6UXF1 575 aa5.09□□□□□ -1.59
SYNE1-233ENST00000535896 Q6ZN92 141 aa5.09□□□□□ -1.59
SYNE1-233ENST00000535896 SEM1Q6ZVN7 128 aa5.09□□□□□ -1.59
SYNE1-233ENST00000535896 S100A7AQ86SG5 101 aa5.09□□□□□ -1.59
SYNE1-233ENST00000535896 TEX45Q8NA69 505 aa5.09□□□□□ -1.59
SYNE1-233ENST00000535896 NUDT10Q8NFP7 164 aa5.09□□□□□ -1.59
SYNE1-233ENST00000535896 NUDT11Q96G61 164 aa5.09□□□□□ -1.59
SYNE1-233ENST00000535896 NDFIP1Q9BT67 221 aa5.09□□□□□ -1.59
SYNE1-233ENST00000535896 TMEM70Q9BUB7 260 aa5.09□□□□□ -1.59
SYNE1-233ENST00000535896 MRPL20Q9BYC9 149 aaKnown RBP5.09□□□□□ -1.59
SYNE1-233ENST00000535896 TNFRSF19Q9NS68 423 aa5.09□□□□□ -1.59
SYNE1-233ENST00000535896 KAAG1Q9UBP8 84 aa5.09□□□□□ -1.59
SYNE1-233ENST00000535896 EPDR1Q9UM22 224 aa5.09□□□□□ -1.59
SYNE1-233ENST00000535896 RELNP78509 3460 aa5.09□□□□□ -1.59
SYNE1-233ENST00000535896 TENM4Q6N022 2769 aa5.08□□□□□ -1.6
SYNE1-233ENST00000535896 USP9YO00507 2555 aaPredicted RBP5.08□□□□□ -1.6
SYNE1-233ENST00000535896 C19orf71A6NCJ1 209 aa5.08□□□□□ -1.6
SYNE1-233ENST00000535896 C2orf70A6NJV1 201 aa5.08□□□□□ -1.6
SYNE1-233ENST00000535896 VSTM5A8MXK1 200 aa5.08□□□□□ -1.6
SYNE1-233ENST00000535896 J3QKU1 62 aa5.08□□□□□ -1.6
SYNE1-233ENST00000535896 LIPFP07098 398 aa5.08□□□□□ -1.6
SYNE1-233ENST00000535896 PLA2G2AP14555 144 aa5.08□□□□□ -1.6
SYNE1-233ENST00000535896 GNLYP22749 145 aa5.08□□□□□ -1.6
SYNE1-233ENST00000535896 CD40P25942 277 aa5.08□□□□□ -1.6
SYNE1-233ENST00000535896 CEACAM8P31997 349 aaPredicted RBP5.08□□□□□ -1.6
SYNE1-233ENST00000535896 FOXA3P55318 350 aaPredicted RBP5.08□□□□□ -1.6
SYNE1-233ENST00000535896 TCL1AP56279 114 aa5.08□□□□□ -1.6
SYNE1-233ENST00000535896 HOXA4Q00056 320 aaPredicted RBP5.08□□□□□ -1.6
SYNE1-233ENST00000535896 WT1-ASQ06250 92 aa5.08□□□□□ -1.6
SYNE1-233ENST00000535896 ZNF474Q6S9Z5 364 aaPredicted RBP5.08□□□□□ -1.6
SYNE1-233ENST00000535896 RBPMS2Q6ZRY4 209 aaKnown RBP5.08□□□□□ -1.6
SYNE1-233ENST00000535896 LINC00305Q7Z4B0 112 aa5.08□□□□□ -1.6
SYNE1-233ENST00000535896 LYPD1Q8N2G4 141 aa5.08□□□□□ -1.6
SYNE1-233ENST00000535896 MUC15Q8N387 334 aa5.08□□□□□ -1.6
SYNE1-233ENST00000535896 FAM216BQ8N7L0 139 aa5.08□□□□□ -1.6
SYNE1-233ENST00000535896 ZNF738Q8NE65 137 aa5.08□□□□□ -1.6
SYNE1-233ENST00000535896 DPF1Q92782 380 aa5.08□□□□□ -1.6
SYNE1-233ENST00000535896 LEAP2Q969E1 77 aa5.08□□□□□ -1.6
SYNE1-233ENST00000535896 ST6GALNAC6Q969X2 333 aa5.08□□□□□ -1.6
SYNE1-233ENST00000535896 PLPPR2Q96GM1 343 aa5.08□□□□□ -1.6
SYNE1-233ENST00000535896 RNF5Q99942 180 aa5.08□□□□□ -1.6
SYNE1-233ENST00000535896 VKORC1Q9BQB6 163 aa5.08□□□□□ -1.6
SYNE1-233ENST00000535896 FAM103A1Q9BTL3 118 aaKnown RBP5.08□□□□□ -1.6
SYNE1-233ENST00000535896 CLEC7AQ9BXN2 247 aa5.08□□□□□ -1.6
SYNE1-233ENST00000535896 MS4A6AQ9H2W1 248 aa5.08□□□□□ -1.6
SYNE1-233ENST00000535896 OTORQ9NRC9 128 aa5.08□□□□□ -1.6
SYNE1-233ENST00000535896 PTPN13Q12923 2485 aa5.08□□□□□ -1.6
SYNE1-233ENST00000535896 ANKHD1Q8IWZ3 2542 aaKnown RBP5.08□□□□□ -1.6
SYNE1-233ENST00000535896 SERTM2A0A1B0GWG4 89 aa5.07□□□□□ -1.6
SYNE1-233ENST00000535896 FBLL1A6NHQ2 334 aaKnown RBP5.07□□□□□ -1.6
SYNE1-233ENST00000535896 C17orf100A8MU93 164 aa5.07□□□□□ -1.6
SYNE1-233ENST00000535896 IGLV2-23P01705 113 aa5.07□□□□□ -1.6
SYNE1-233ENST00000535896 P01737 135 aa5.07□□□□□ -1.6
SYNE1-233ENST00000535896 SLC25A5P05141 298 aaKnown RBP5.07□□□□□ -1.6
SYNE1-233ENST00000535896 NPSP0C0P6 89 aa5.07□□□□□ -1.6
SYNE1-233ENST00000535896 GP9P14770 177 aa5.07□□□□□ -1.6
SYNE1-233ENST00000535896 GATA2P23769 480 aaPredicted RBP5.07□□□□□ -1.6
SYNE1-233ENST00000535896 UQCRFS1P47985 274 aa5.07□□□□□ -1.6
SYNE1-233ENST00000535896 TNXAQ16473 311 aa5.07□□□□□ -1.6
SYNE1-233ENST00000535896 LRRC10Q5BKY1 277 aa5.07□□□□□ -1.6
SYNE1-233ENST00000535896 PSMG4Q5JS54 123 aa5.07□□□□□ -1.6
SYNE1-233ENST00000535896 PATE2Q6UY27 113 aa5.07□□□□□ -1.6
SYNE1-233ENST00000535896 SPATA12Q7Z6I5 190 aa5.07□□□□□ -1.6
SYNE1-233ENST00000535896 MOB3BQ86TA1 216 aa5.07□□□□□ -1.6
SYNE1-233ENST00000535896 C11orf42Q8N5U0 333 aa5.07□□□□□ -1.6
SYNE1-233ENST00000535896 C8orf46Q8TAG6 207 aa5.07□□□□□ -1.6
SYNE1-233ENST00000535896 NPIPB3Q92617 1050 aa5.07□□□□□ -1.6
SYNE1-233ENST00000535896 CCL13Q99616 98 aa5.07□□□□□ -1.6
SYNE1-233ENST00000535896 PMCHL2Q9BQD1 86 aa5.07□□□□□ -1.6
SYNE1-233ENST00000535896 TMEM191AQ9H0A3 160 aa5.07□□□□□ -1.6
SYNE1-233ENST00000535896 FNDC4Q9H6D8 234 aaPredicted RBP5.07□□□□□ -1.6
SYNE1-233ENST00000535896 HSPB8Q9UJY1 196 aa5.07□□□□□ -1.6
SYNE1-233ENST00000535896 FAM215AQ9Y5M1 114 aa5.07□□□□□ -1.6
SYNE1-233ENST00000535896 COX11Q9Y6N1 276 aa5.07□□□□□ -1.6
SYNE1-233ENST00000535896 PPIAL4EA0A075B759 164 aa5.06□□□□□ -1.6
SYNE1-233ENST00000535896 A0A1W2PPI3 338 aa5.06□□□□□ -1.6
SYNE1-233ENST00000535896 IGLC7A0M8Q6 106 aa5.06□□□□□ -1.6
SYNE1-233ENST00000535896 CGB1A6NKQ9 187 aa5.06□□□□□ -1.6
SYNE1-233ENST00000535896 HSBP1L1C9JCN9 74 aa5.06□□□□□ -1.6
Retrieved 100 of 20,778 RNA–protein pairs in 115.2 ms