RNA–Protein interactions for RNA: ENST00000530790.5

VPS28-211, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 2

Gene VPS28, Length 561 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-211ENST00000530790 SLC45A2Q9UMX9 530 aa9.69□□□□□ -0.86
VPS28-211ENST00000530790 HLA-DRB4X5D2U9 266 aa9.69□□□□□ -0.86
VPS28-211ENST00000530790 IGHV4-28A0A0C4DH34 117 aa9.68□□□□□ -0.86
VPS28-211ENST00000530790 ZNF705EA8MWA4 302 aaPredicted RBP9.68□□□□□ -0.86
VPS28-211ENST00000530790 H3BMM0 161 aa9.68□□□□□ -0.86
VPS28-211ENST00000530790 LY6G6CO95867 125 aa9.68□□□□□ -0.86
VPS28-211ENST00000530790 S100A7P31151 101 aa9.68□□□□□ -0.86
VPS28-211ENST00000530790 GALR1P47211 349 aa9.68□□□□□ -0.86
VPS28-211ENST00000530790 IAH1Q2TAA2 248 aaPredicted RBP9.68□□□□□ -0.86
VPS28-211ENST00000530790 SAMD13Q5VXD3 122 aa9.68□□□□□ -0.86
VPS28-211ENST00000530790 MITD1Q8WV92 249 aa9.68□□□□□ -0.86
VPS28-211ENST00000530790 LINC00052Q96N35 136 aa9.68□□□□□ -0.86
VPS28-211ENST00000530790 WDR12Q9GZL7 423 aaKnown RBP9.68□□□□□ -0.86
VPS28-211ENST00000530790 SLC25A22Q9H936 323 aa9.68□□□□□ -0.86
VPS28-211ENST00000530790 TBC1D24Q9ULP9 559 aa9.68□□□□□ -0.86
VPS28-211ENST00000530790 DNAH1Q9P2D7 4330 aa9.68□□□□□ -0.86
VPS28-211ENST00000530790 SOCS3O14543 225 aa9.67□□□□□ -0.86
VPS28-211ENST00000530790 PLA2G10O15496 165 aa9.67□□□□□ -0.86
VPS28-211ENST00000530790 ORM2P19652 201 aa9.67□□□□□ -0.86
VPS28-211ENST00000530790 MEOX2P50222 304 aa9.67□□□□□ -0.86
VPS28-211ENST00000530790 TMEM144Q7Z5S9 345 aa9.67□□□□□ -0.86
VPS28-211ENST00000530790 ZBTB8BQ8NAP8 495 aaPredicted RBP9.67□□□□□ -0.86
VPS28-211ENST00000530790 OR1B1Q8NGR6 318 aa9.67□□□□□ -0.86
VPS28-211ENST00000530790 SMIM8Q96KF7 97 aa9.67□□□□□ -0.86
VPS28-211ENST00000530790 TMEM147Q9BVK8 224 aa9.67□□□□□ -0.86
VPS28-211ENST00000530790 GSKIPQ9P0R6 139 aa9.67□□□□□ -0.86
VPS28-211ENST00000530790 ISLRO14498 428 aa9.66□□□□□ -0.86
VPS28-211ENST00000530790 GATA2P23769 480 aaPredicted RBP9.66□□□□□ -0.86
VPS28-211ENST00000530790 RRAS2P62070 204 aaPredicted RBP9.66□□□□□ -0.86
VPS28-211ENST00000530790 ZNF846Q147U1 533 aa9.66□□□□□ -0.86
VPS28-211ENST00000530790 FOXI2Q6ZQN5 318 aa9.66□□□□□ -0.86
VPS28-211ENST00000530790 CYP2G1PQ6ZSU1 146 aa9.66□□□□□ -0.86
VPS28-211ENST00000530790 CSNK1G2-AS1Q8NCQ2 148 aa9.66□□□□□ -0.86
VPS28-211ENST00000530790 CCDC32Q9BV29 185 aa9.66□□□□□ -0.86
VPS28-211ENST00000530790 SLC25A32Q9H2D1 315 aa9.66□□□□□ -0.86
VPS28-211ENST00000530790 SAV1Q9H4B6 383 aaPredicted RBP9.66□□□□□ -0.86
VPS28-211ENST00000530790 NUDT15Q9NV35 164 aa9.66□□□□□ -0.86
VPS28-211ENST00000530790 XCL2Q9UBD3 114 aa9.66□□□□□ -0.86
VPS28-211ENST00000530790 MGAT4CQ9UBM8 478 aa9.66□□□□□ -0.86
VPS28-211ENST00000530790 RCL1Q9Y2P8 373 aaKnown RBP9.66□□□□□ -0.86
VPS28-211ENST00000530790 X6R8D5 127 aa9.66□□□□□ -0.86
VPS28-211ENST00000530790 TRAV6A0A075B6T7 132 aa9.65□□□□□ -0.86
VPS28-211ENST00000530790 ZNF98A6NK75 572 aa9.65□□□□□ -0.86
VPS28-211ENST00000530790 TSC22D2O75157 780 aa9.65□□□□□ -0.86
VPS28-211ENST00000530790 IGKV3-20P01619 116 aa9.65□□□□□ -0.86
VPS28-211ENST00000530790 TCRBP04435 133 aa9.65□□□□□ -0.86
VPS28-211ENST00000530790 IL5P05113 134 aa9.65□□□□□ -0.86
VPS28-211ENST00000530790 METTL15P1P0C7V9 234 aa9.65□□□□□ -0.86
VPS28-211ENST00000530790 RBMY1A1P0DJD3 496 aaKnown RBP9.65□□□□□ -0.86
VPS28-211ENST00000530790 RBMY1CP0DJD4 496 aa9.65□□□□□ -0.86
VPS28-211ENST00000530790 TAS2R30P59541 319 aa9.65□□□□□ -0.86
VPS28-211ENST00000530790 RAP2BP61225 183 aa9.65□□□□□ -0.86
VPS28-211ENST00000530790 DLK1P80370 383 aa9.65□□□□□ -0.86
VPS28-211ENST00000530790 RBMY1FQ15415 496 aaKnown RBP9.65□□□□□ -0.86
VPS28-211ENST00000530790 GDF5OSQ5U4N7 250 aa9.65□□□□□ -0.86
VPS28-211ENST00000530790 TMEM14EPQ6UXP3 125 aa9.65□□□□□ -0.86
VPS28-211ENST00000530790 TMEM182Q6ZP80 229 aaPredicted RBP9.65□□□□□ -0.86
VPS28-211ENST00000530790 OR10P1Q8NGE3 313 aa9.65□□□□□ -0.86
VPS28-211ENST00000530790 C16orf92Q96LL3 132 aa9.65□□□□□ -0.86
VPS28-211ENST00000530790 GPR82Q96P67 336 aa9.65□□□□□ -0.86
VPS28-211ENST00000530790 HRH4Q9H3N8 390 aa9.65□□□□□ -0.86
VPS28-211ENST00000530790 DOK5Q9P104 306 aa9.65□□□□□ -0.86
VPS28-211ENST00000530790 PMS2P5A8MQ11 134 aa9.64□□□□□ -0.87
VPS28-211ENST00000530790 FNDC10F2Z333 226 aa9.64□□□□□ -0.87
VPS28-211ENST00000530790 CCSO14618 274 aa9.64□□□□□ -0.87
VPS28-211ENST00000530790 CCNKO75909 580 aa9.64□□□□□ -0.87
VPS28-211ENST00000530790 LINC00869P0C866 280 aa9.64□□□□□ -0.87
VPS28-211ENST00000530790 PAX9P55771 341 aa9.64□□□□□ -0.87
VPS28-211ENST00000530790 DEFB1P60022 68 aa9.64□□□□□ -0.87
VPS28-211ENST00000530790 SPATA31B1PQ5VZV4 182 aa9.64□□□□□ -0.87
VPS28-211ENST00000530790 EBLN2Q6P2I7 272 aa9.64□□□□□ -0.87
VPS28-211ENST00000530790 OR4B1Q8NGF8 309 aa9.64□□□□□ -0.87
VPS28-211ENST00000530790 C2CD4CQ8TF44 421 aa9.64□□□□□ -0.87
VPS28-211ENST00000530790 SCRT1Q9BWW7 348 aa9.64□□□□□ -0.87
VPS28-211ENST00000530790 RPRMQ9NS64 109 aa9.64□□□□□ -0.87
VPS28-211ENST00000530790 HIGD1AQ9Y241 93 aa9.64□□□□□ -0.87
VPS28-211ENST00000530790 PLECQ15149 4684 aaKnown RBP9.63□□□□□ -0.87
VPS28-211ENST00000530790 HYDINQ4G0P3 5121 aa9.63□□□□□ -0.87
VPS28-211ENST00000530790 FAM25EA8MYX2 175 aa9.63□□□□□ -0.87
VPS28-211ENST00000530790 C11orf94C9JXX5 98 aa9.63□□□□□ -0.87
VPS28-211ENST00000530790 H3BRN7 92 aa9.63□□□□□ -0.87
VPS28-211ENST00000530790 L7N2F9 121 aa9.63□□□□□ -0.87
VPS28-211ENST00000530790 HYPMO75409 117 aa9.63□□□□□ -0.87
VPS28-211ENST00000530790 MBPP02686 304 aaPredicted RBP9.63□□□□□ -0.87
VPS28-211ENST00000530790 SELENOTP62341 195 aa9.63□□□□□ -0.87
VPS28-211ENST00000530790 VAMP2P63027 116 aa9.63□□□□□ -0.87
VPS28-211ENST00000530790 GSG1LQ6UXU4 331 aa9.63□□□□□ -0.87
VPS28-211ENST00000530790 S100A7AQ86SG5 101 aa9.63□□□□□ -0.87
VPS28-211ENST00000530790 ZNF431Q8TF32 576 aaPredicted RBP9.63□□□□□ -0.87
VPS28-211ENST00000530790 SEC22CQ9BRL7 303 aa9.63□□□□□ -0.87
VPS28-211ENST00000530790 RSG1Q9BU20 258 aa9.63□□□□□ -0.87
VPS28-211ENST00000530790 SLC25A39Q9BZJ4 359 aaPredicted RBP9.63□□□□□ -0.87
VPS28-211ENST00000530790 NPVFQ9HCQ7 196 aa9.63□□□□□ -0.87
VPS28-211ENST00000530790 AGRNO00468 2067 aa9.63□□□□□ -0.87
VPS28-211ENST00000530790 ELOA3CA0A087WX78 387 aaPredicted RBP9.62□□□□□ -0.87
VPS28-211ENST00000530790 C7orf66A4D0T2 115 aa9.62□□□□□ -0.87
VPS28-211ENST00000530790 C5orf51A6NDU8 294 aa9.62□□□□□ -0.87
VPS28-211ENST00000530790 F6UB75 175 aa9.62□□□□□ -0.87
VPS28-211ENST00000530790 OR5G3P0C626 314 aa9.62□□□□□ -0.87
VPS28-211ENST00000530790 HLA-DMBP28068 263 aa9.62□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 67 ms