RNA–Protein interactions for RNA: ENST00000526553.5

CD44-223, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 4

Gene CD44, Length 571 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-223ENST00000526553 REEP5Q00765 189 aa2□□□□□ -2.09
CD44-223ENST00000526553 AKR1C1Q04828 323 aa2□□□□□ -2.09
CD44-223ENST00000526553 ACOT6Q3I5F7 207 aaPredicted RBP2□□□□□ -2.09
CD44-223ENST00000526553 LINC00299Q6ZSB3 139 aa2□□□□□ -2.09
CD44-223ENST00000526553 SPATA12Q7Z6I5 190 aa2□□□□□ -2.09
CD44-223ENST00000526553 C20orf196Q8IYI0 205 aa2□□□□□ -2.09
CD44-223ENST00000526553 SGMS2Q8NHU3 365 aa2□□□□□ -2.09
CD44-223ENST00000526553 SMCR5Q8TEV8 140 aa2□□□□□ -2.09
CD44-223ENST00000526553 DNAJC9Q8WXX5 260 aa2□□□□□ -2.09
CD44-223ENST00000526553 RNASE6Q93091 150 aaKnown RBP2□□□□□ -2.09
CD44-223ENST00000526553 DCUN1D1Q96GG9 259 aa2□□□□□ -2.09
CD44-223ENST00000526553 CNBD2Q96M20 576 aa2□□□□□ -2.09
CD44-223ENST00000526553 CXorf21Q9HAI6 301 aa2□□□□□ -2.09
CD44-223ENST00000526553 ARL2BPQ9Y2Y0 163 aa2□□□□□ -2.09
CD44-223ENST00000526553 FAM215AQ9Y5M1 114 aa2□□□□□ -2.09
CD44-223ENST00000526553 V9GYQ6 96 aa2□□□□□ -2.09
CD44-223ENST00000526553 UNC13CQ8NB66 2214 aa2□□□□□ -2.09
CD44-223ENST00000526553 ZNF407Q9C0G0 2248 aa2□□□□□ -2.09
CD44-223ENST00000526553 MYO9AB2RTY4 2548 aa2□□□□□ -2.09
CD44-223ENST00000526553 RP1P56715 2156 aa2□□□□□ -2.09
CD44-223ENST00000526553 UTP20O75691 2785 aaKnown RBP2□□□□□ -2.09
CD44-223ENST00000526553 MED13Q9UHV7 2174 aa1.99□□□□□ -2.09
CD44-223ENST00000526553 C2CD3Q4AC94 2353 aa1.99□□□□□ -2.09
CD44-223ENST00000526553 PQLC2LA1A4F0 135 aa1.99□□□□□ -2.09
CD44-223ENST00000526553 EFCAB10A6NFE3 127 aa1.99□□□□□ -2.09
CD44-223ENST00000526553 ODF3BA8MYP8 253 aa1.99□□□□□ -2.09
CD44-223ENST00000526553 LST1O00453 97 aa1.99□□□□□ -2.09
CD44-223ENST00000526553 SLC22A1O15245 554 aa1.99□□□□□ -2.09
CD44-223ENST00000526553 NOS1APO75052 506 aaPredicted RBP1.99□□□□□ -2.09
CD44-223ENST00000526553 RPL5P46777 297 aaKnown RBP1.99□□□□□ -2.09
CD44-223ENST00000526553 HAAOP46952 286 aa1.99□□□□□ -2.09
CD44-223ENST00000526553 DEFA1P59665 94 aa1.99□□□□□ -2.09
CD44-223ENST00000526553 DEFA3P59666 94 aa1.99□□□□□ -2.09
CD44-223ENST00000526553 RANP62826 216 aaKnown RBP1.99□□□□□ -2.09
CD44-223ENST00000526553 EDDM3AQ14507 147 aa1.99□□□□□ -2.09
CD44-223ENST00000526553 KRTAP21-2Q3LI59 83 aa1.99□□□□□ -2.09
CD44-223ENST00000526553 TNFAIP8L3Q5GJ75 292 aa1.99□□□□□ -2.09
CD44-223ENST00000526553 GLT8D1Q68CQ7 371 aa1.99□□□□□ -2.09
CD44-223ENST00000526553 ALKAL1Q6UXT8 129 aa1.99□□□□□ -2.09
CD44-223ENST00000526553 C3orf62Q6ZUJ4 267 aa1.99□□□□□ -2.09
CD44-223ENST00000526553 C2orf91Q6ZV80 131 aa1.99□□□□□ -2.09
CD44-223ENST00000526553 OR51D1Q8NGF3 324 aa1.99□□□□□ -2.09
CD44-223ENST00000526553 S100ZQ8WXG8 99 aa1.99□□□□□ -2.09
CD44-223ENST00000526553 POP5Q969H6 163 aaKnown RBP1.99□□□□□ -2.09
CD44-223ENST00000526553 BORCS5Q969J3 196 aa1.99□□□□□ -2.09
CD44-223ENST00000526553 NMNAT3Q96T66 252 aa1.99□□□□□ -2.09
CD44-223ENST00000526553 PDCD10Q9BUL8 212 aa1.99□□□□□ -2.09
CD44-223ENST00000526553 ZNF471Q9BX82 626 aaPredicted RBP1.99□□□□□ -2.09
CD44-223ENST00000526553 FLNCQ14315 2725 aa1.98□□□□□ -2.09
CD44-223ENST00000526553 ITPR3Q14573 2671 aa1.98□□□□□ -2.09
CD44-223ENST00000526553 PNMA8CA0A1B0GUJ8 204 aa1.98□□□□□ -2.09
CD44-223ENST00000526553 A0A1W2PQD3 144 aa1.98□□□□□ -2.09
CD44-223ENST00000526553 C2orf74A8MZ97 194 aa1.98□□□□□ -2.09
CD44-223ENST00000526553 GNRH2O43555 120 aa1.98□□□□□ -2.09
CD44-223ENST00000526553 IFNA14P01570 189 aa1.98□□□□□ -2.09
CD44-223ENST00000526553 IFNA6P05013 189 aa1.98□□□□□ -2.09
CD44-223ENST00000526553 CXCL8P10145 99 aa1.98□□□□□ -2.09
CD44-223ENST00000526553 FGF6P10767 208 aa1.98□□□□□ -2.09
CD44-223ENST00000526553 HMGA1P17096 107 aaKnown RBP1.98□□□□□ -2.09
CD44-223ENST00000526553 GZMHP20718 246 aa1.98□□□□□ -2.09
CD44-223ENST00000526553 GABRA4P48169 554 aa1.98□□□□□ -2.09
CD44-223ENST00000526553 OR4D2P58180 307 aa1.98□□□□□ -2.09
CD44-223ENST00000526553 GNG2P59768 71 aa1.98□□□□□ -2.09
CD44-223ENST00000526553 ESPL1Q14674 2120 aa1.98□□□□□ -2.09
CD44-223ENST00000526553 STX19Q8N4C7 294 aa1.98□□□□□ -2.09
CD44-223ENST00000526553 TBC1D19Q8N5T2 526 aa1.98□□□□□ -2.09
CD44-223ENST00000526553 PRAP1Q96NZ9 151 aa1.98□□□□□ -2.09
CD44-223ENST00000526553 SERPINI1Q99574 410 aa1.98□□□□□ -2.09
CD44-223ENST00000526553 TCEAL7Q9BRU2 100 aa1.98□□□□□ -2.09
CD44-223ENST00000526553 KIFC1Q9BW19 673 aa1.98□□□□□ -2.09
CD44-223ENST00000526553 MMACHCQ9Y4U1 282 aa1.98□□□□□ -2.09
CD44-223ENST00000526553 MINOS1-NBL1R4GNA1 71 aa1.98□□□□□ -2.09
CD44-223ENST00000526553 LRRK2Q5S007 2527 aa1.98□□□□□ -2.09
CD44-223ENST00000526553 CENPEQ02224 2701 aa1.98□□□□□ -2.09
CD44-223ENST00000526553 TRPM6Q9BX84 2022 aa1.98□□□□□ -2.09
CD44-223ENST00000526553 MED13LQ71F56 2210 aa1.98□□□□□ -2.09
CD44-223ENST00000526553 POLQO75417 2590 aa1.98□□□□□ -2.09
CD44-223ENST00000526553 NAV3Q8IVL0 2385 aa1.98□□□□□ -2.09
CD44-223ENST00000526553 PLXNB1O43157 2135 aa1.97□□□□□ -2.09
CD44-223ENST00000526553 MDC1Q14676 2089 aaKnown RBP1.97□□□□□ -2.09
CD44-223ENST00000526553 NYNRINQ9P2P1 1898 aaKnown RBP1.97□□□□□ -2.09
CD44-223ENST00000526553 A8MUN3 132 aa1.97□□□□□ -2.09
CD44-223ENST00000526553 MIF4GDA9UHW6 222 aaKnown RBP1.97□□□□□ -2.09
CD44-223ENST00000526553 INMT-MINDY4F8WBC2 141 aa1.97□□□□□ -2.09
CD44-223ENST00000526553 BHLHE40O14503 412 aa1.97□□□□□ -2.09
CD44-223ENST00000526553 TXNDC9O14530 226 aa1.97□□□□□ -2.09
CD44-223ENST00000526553 PLA2G10O15496 165 aa1.97□□□□□ -2.09
CD44-223ENST00000526553 SRP19P09132 144 aaKnown RBP1.97□□□□□ -2.09
CD44-223ENST00000526553 ZNF728P0DKX0 622 aa1.97□□□□□ -2.09
CD44-223ENST00000526553 CBR1P16152 277 aa1.97□□□□□ -2.09
CD44-223ENST00000526553 SERPINB1P30740 379 aa1.97□□□□□ -2.09
CD44-223ENST00000526553 ERVS71-1P61550 626 aa1.97□□□□□ -2.09
CD44-223ENST00000526553 MYL5Q02045 173 aa1.97□□□□□ -2.09
CD44-223ENST00000526553 MIAQ16674 131 aa1.97□□□□□ -2.09
CD44-223ENST00000526553 LIN52Q52LA3 116 aa1.97□□□□□ -2.09
CD44-223ENST00000526553 IDO2Q6ZQW0 420 aa1.97□□□□□ -2.09
CD44-223ENST00000526553 AKAP14Q86UN6 197 aa1.97□□□□□ -2.09
CD44-223ENST00000526553 MMGT1Q8N4V1 131 aa1.97□□□□□ -2.09
CD44-223ENST00000526553 OR5B17Q8NGF7 314 aa1.97□□□□□ -2.09
CD44-223ENST00000526553 RNASE11Q8TAA1 199 aaKnown RBP1.97□□□□□ -2.09
Retrieved 100 of 20,778 RNA–protein pairs in 41.9 ms