RNA–Protein interactions for RNA: ENST00000519664.1

SYNPO-204, Transcript of synaptopodin, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNPO, Length 4,571 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-204ENST00000519664 ASPHD1Q5U4P2 390 aa9.57□□□□□ -0.88
SYNPO-204ENST00000519664 OR10J6PQ8NGY7 276 aa9.57□□□□□ -0.88
SYNPO-204ENST00000519664 ARPC1AQ92747 370 aa9.57□□□□□ -0.88
SYNPO-204ENST00000519664 RPP21Q9H633 154 aaKnown RBP9.57□□□□□ -0.88
SYNPO-204ENST00000519664 PMS2P5A8MQ11 134 aa9.57□□□□□ -0.88
SYNPO-204ENST00000519664 TMEM178BH3BS89 294 aa9.57□□□□□ -0.88
SYNPO-204ENST00000519664 TRGV3P03979 118 aa9.57□□□□□ -0.88
SYNPO-204ENST00000519664 TPTE2P1Q5T6R2 138 aa9.57□□□□□ -0.88
SYNPO-204ENST00000519664 OR10AG1Q8NH19 301 aa9.57□□□□□ -0.88
SYNPO-204ENST00000519664 GAFA1Q96PS6 74 aa9.57□□□□□ -0.88
SYNPO-204ENST00000519664 PHLDA3Q9Y5J5 127 aa9.57□□□□□ -0.88
SYNPO-204ENST00000519664 C7orf71A4D174 169 aa9.57□□□□□ -0.88
SYNPO-204ENST00000519664 MBD3L4A6NDZ8 208 aaPredicted RBP9.57□□□□□ -0.88
SYNPO-204ENST00000519664 MBD3L3A6NE82 208 aaPredicted RBP9.57□□□□□ -0.88
SYNPO-204ENST00000519664 MBD3L5A6NJ08 208 aaPredicted RBP9.57□□□□□ -0.88
SYNPO-204ENST00000519664 WNT2P09544 360 aa9.57□□□□□ -0.88
SYNPO-204ENST00000519664 AREGP15514 252 aa9.57□□□□□ -0.88
SYNPO-204ENST00000519664 GCSHP23434 173 aa9.57□□□□□ -0.88
SYNPO-204ENST00000519664 OCIAD2Q56VL3 154 aa9.57□□□□□ -0.88
SYNPO-204ENST00000519664 MBD3L2Q8NHZ7 208 aaPredicted RBP9.57□□□□□ -0.88
SYNPO-204ENST00000519664 NACAE9PAV3 2078 aa9.57□□□□□ -0.88
SYNPO-204ENST00000519664 NBR2O15453 112 aa9.56□□□□□ -0.88
SYNPO-204ENST00000519664 MMP23AO75900 390 aa9.56□□□□□ -0.88
SYNPO-204ENST00000519664 WISP2O76076 250 aa9.56□□□□□ -0.88
SYNPO-204ENST00000519664 PSG1P11464 419 aa9.56□□□□□ -0.88
SYNPO-204ENST00000519664 HIST1H1AQ02539 215 aaPredicted RBP9.56□□□□□ -0.88
SYNPO-204ENST00000519664 AMMECR1LQ6DCA0 310 aa9.56□□□□□ -0.88
SYNPO-204ENST00000519664 UNQ6494/PRO21346Q6UXR6 183 aa9.56□□□□□ -0.88
SYNPO-204ENST00000519664 TRBV20OR9-2A0A075B6H5 130 aa9.56□□□□□ -0.88
SYNPO-204ENST00000519664 DKK1O94907 266 aa9.56□□□□□ -0.88
SYNPO-204ENST00000519664 GPX1P07203 203 aa9.56□□□□□ -0.88
SYNPO-204ENST00000519664 IGHV1-8P0DP01 117 aa9.56□□□□□ -0.88
SYNPO-204ENST00000519664 WT1P19544 449 aaPredicted RBP9.56□□□□□ -0.88
SYNPO-204ENST00000519664 ZNF134P52741 427 aa9.56□□□□□ -0.88
SYNPO-204ENST00000519664 HAPLN4Q86UW8 402 aa9.56□□□□□ -0.88
SYNPO-204ENST00000519664 RNF125Q96EQ8 232 aa9.56□□□□□ -0.88
SYNPO-204ENST00000519664 SCRT1Q9BWW7 348 aa9.56□□□□□ -0.88
SYNPO-204ENST00000519664 USP9XQ93008 2570 aaPredicted RBP9.56□□□□□ -0.88
SYNPO-204ENST00000519664 NAV2Q8IVL1 2488 aa9.56□□□□□ -0.88
SYNPO-204ENST00000519664 IGHV3OR16-12A0A075B7B8 117 aa9.56□□□□□ -0.88
SYNPO-204ENST00000519664 PDLIM4P50479 330 aa9.56□□□□□ -0.88
SYNPO-204ENST00000519664 Q6ZS92 163 aa9.56□□□□□ -0.88
SYNPO-204ENST00000519664 IZUMO1RA6ND01 250 aa9.56□□□□□ -0.88
SYNPO-204ENST00000519664 ATP5G2Q06055 141 aa9.56□□□□□ -0.88
SYNPO-204ENST00000519664 IGHV2-26A0A0B4J1V2 119 aa9.55□□□□□ -0.88
SYNPO-204ENST00000519664 GLMPQ8WWB7 406 aa9.55□□□□□ -0.88
SYNPO-204ENST00000519664 CST9LQ9H4G1 147 aa9.55□□□□□ -0.88
SYNPO-204ENST00000519664 JKAMPQ9P055 326 aa9.55□□□□□ -0.88
SYNPO-204ENST00000519664 OBSL1O75147 1896 aa9.55□□□□□ -0.88
SYNPO-204ENST00000519664 C19orf67A6NJJ6 358 aa9.55□□□□□ -0.88
SYNPO-204ENST00000519664 SH2D7A6NKC9 451 aaPredicted RBP9.55□□□□□ -0.88
SYNPO-204ENST00000519664 DLX6P56179 175 aa9.55□□□□□ -0.88
SYNPO-204ENST00000519664 LCN12Q6JVE5 192 aa9.55□□□□□ -0.88
SYNPO-204ENST00000519664 TDGF1P13385 188 aa9.55□□□□□ -0.88
SYNPO-204ENST00000519664 ERVK11-1P61568 191 aa9.55□□□□□ -0.88
SYNPO-204ENST00000519664 IGFL4Q6B9Z1 124 aa9.55□□□□□ -0.88
SYNPO-204ENST00000519664 CIARTQ8N365 385 aaPredicted RBP9.55□□□□□ -0.88
SYNPO-204ENST00000519664 SPCS1Q9Y6A9 102 aa9.55□□□□□ -0.88
SYNPO-204ENST00000519664 ZNF324O75467 553 aaPredicted RBP9.55□□□□□ -0.88
SYNPO-204ENST00000519664 COL8A2P25067 703 aa9.55□□□□□ -0.88
SYNPO-204ENST00000519664 PRELID3AQ96N28 172 aa9.55□□□□□ -0.88
SYNPO-204ENST00000519664 MAP1LC3AQ9H492 121 aa9.55□□□□□ -0.88
SYNPO-204ENST00000519664 OSTCQ9NRP0 149 aa9.55□□□□□ -0.88
SYNPO-204ENST00000519664 PLA2G2EQ9NZK7 142 aa9.55□□□□□ -0.88
SYNPO-204ENST00000519664 DENND4AQ7Z401 1863 aa9.54□□□□□ -0.88
SYNPO-204ENST00000519664 NPIPB5A8MRT5 1133 aa9.54□□□□□ -0.88
SYNPO-204ENST00000519664 H0YJW9 148 aa9.54□□□□□ -0.88
SYNPO-204ENST00000519664 PSG9Q00887 426 aa9.54□□□□□ -0.88
SYNPO-204ENST00000519664 PRSS8Q16651 343 aa9.54□□□□□ -0.88
SYNPO-204ENST00000519664 SMAGPQ0VAQ4 97 aa9.54□□□□□ -0.88
SYNPO-204ENST00000519664 CHD7Q9P2D1 2997 aa9.54□□□□□ -0.88
SYNPO-204ENST00000519664 TRAV8-6A0A0B4J262 113 aa9.54□□□□□ -0.88
SYNPO-204ENST00000519664 C9JCJ5 164 aa9.54□□□□□ -0.88
SYNPO-204ENST00000519664 ZNF257Q9Y2Q1 563 aa9.54□□□□□ -0.88
SYNPO-204ENST00000519664 M0R3E3 92 aa9.53□□□□□ -0.88
SYNPO-204ENST00000519664 TMEM219Q86XT9 240 aa9.53□□□□□ -0.88
SYNPO-204ENST00000519664 MCRIP2Q9BUT9 160 aaKnown RBP9.53□□□□□ -0.88
SYNPO-204ENST00000519664 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP9.53□□□□□ -0.88
SYNPO-204ENST00000519664 LMO1P25800 156 aa9.53□□□□□ -0.88
SYNPO-204ENST00000519664 ZNF138P52744 262 aa9.53□□□□□ -0.88
SYNPO-204ENST00000519664 RPL15P61313 204 aaKnown RBP9.53□□□□□ -0.88
SYNPO-204ENST00000519664 DEFB104AQ8WTQ1 72 aa9.53□□□□□ -0.88
SYNPO-204ENST00000519664 WFDC12Q8WWY7 111 aa9.53□□□□□ -0.88
SYNPO-204ENST00000519664 VKORC1Q9BQB6 163 aa9.53□□□□□ -0.88
SYNPO-204ENST00000519664 ADAMTS9Q9P2N4 1935 aa9.53□□□□□ -0.88
SYNPO-204ENST00000519664 GAGE12BA1L429 117 aa9.53□□□□□ -0.88
SYNPO-204ENST00000519664 TSPOP30536 169 aa9.53□□□□□ -0.88
SYNPO-204ENST00000519664 FXYD7P58549 80 aa9.53□□□□□ -0.88
SYNPO-204ENST00000519664 FOXL1Q12952 345 aa9.53□□□□□ -0.88
SYNPO-204ENST00000519664 SLC25A48Q6ZT89 311 aaKnown RBP9.53□□□□□ -0.88
SYNPO-204ENST00000519664 SSC4DQ8WTU2 575 aa9.53□□□□□ -0.88
SYNPO-204ENST00000519664 C7orf69Q9H7B7 122 aa9.53□□□□□ -0.88
SYNPO-204ENST00000519664 TMEM160Q9NX00 188 aa9.53□□□□□ -0.88
SYNPO-204ENST00000519664 IGHV1-3A0A0C4DH29 117 aa9.53□□□□□ -0.88
SYNPO-204ENST00000519664 OR5A1Q8NGJ0 315 aa9.53□□□□□ -0.88
SYNPO-204ENST00000519664 MRPS16Q9Y3D3 137 aaKnown RBP9.53□□□□□ -0.88
SYNPO-204ENST00000519664 HTTP42858 3142 aa9.52□□□□□ -0.88
SYNPO-204ENST00000519664 H7C2G1 150 aa9.52□□□□□ -0.88
SYNPO-204ENST00000519664 RNASE2P10153 161 aaKnown RBP9.52□□□□□ -0.88
SYNPO-204ENST00000519664 RHOGP84095 191 aa9.52□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 36.1 ms