RNA–Protein interactions for RNA: ENST00000513248.1

NUP54-212, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 531 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-212ENST00000513248 TRAPPC2BP0DI82 140 aa2.59□□□□□ -1.99
NUP54-212ENST00000513248 OR13C7P0DN81 318 aa2.59□□□□□ -1.99
NUP54-212ENST00000513248 PSMB6P28072 239 aa2.59□□□□□ -1.99
NUP54-212ENST00000513248 HRH1P35367 487 aa2.59□□□□□ -1.99
NUP54-212ENST00000513248 AKR1C2P52895 323 aa2.59□□□□□ -1.99
NUP54-212ENST00000513248 TAS2R31P59538 309 aa2.59□□□□□ -1.99
NUP54-212ENST00000513248 GAMTQ14353 236 aa2.59□□□□□ -1.99
NUP54-212ENST00000513248 TRIM16LQ309B1 348 aa2.59□□□□□ -1.99
NUP54-212ENST00000513248 SCGB2B2Q4G0G5 96 aa2.59□□□□□ -1.99
NUP54-212ENST00000513248 Q56UQ5 140 aa2.59□□□□□ -1.99
NUP54-212ENST00000513248 RNASE10Q5GAN6 216 aaKnown RBP2.59□□□□□ -1.99
NUP54-212ENST00000513248 GPR107Q5VW38 600 aa2.59□□□□□ -1.99
NUP54-212ENST00000513248 ETFRF1Q6IPR1 90 aa2.59□□□□□ -1.99
NUP54-212ENST00000513248 PLET1Q6UQ28 207 aa2.59□□□□□ -1.99
NUP54-212ENST00000513248 ZNF818PQ6ZRF7 136 aa2.59□□□□□ -1.99
NUP54-212ENST00000513248 H2BFWTQ7Z2G1 175 aa2.59□□□□□ -1.99
NUP54-212ENST00000513248 Q8N402 240 aa2.59□□□□□ -1.99
NUP54-212ENST00000513248 TTC9CQ8N5M4 171 aa2.59□□□□□ -1.99
NUP54-212ENST00000513248 UBAC2Q8NBM4 344 aa2.59□□□□□ -1.99
NUP54-212ENST00000513248 OR1L8Q8NGR8 309 aa2.59□□□□□ -1.99
NUP54-212ENST00000513248 TMEM167AQ8TBQ9 72 aa2.59□□□□□ -1.99
NUP54-212ENST00000513248 MYOZ3Q8TDC0 251 aa2.59□□□□□ -1.99
NUP54-212ENST00000513248 C15orf40Q8WUR7 153 aa2.59□□□□□ -1.99
NUP54-212ENST00000513248 GIMAP1Q8WWP7 306 aa2.59□□□□□ -1.99
NUP54-212ENST00000513248 SLC25A46Q96AG3 418 aa2.59□□□□□ -1.99
NUP54-212ENST00000513248 TMEM56Q96MV1 263 aa2.59□□□□□ -1.99
NUP54-212ENST00000513248 MRPS26Q9BYN8 205 aaKnown RBP2.59□□□□□ -1.99
NUP54-212ENST00000513248 ENY2Q9NPA8 101 aa2.59□□□□□ -1.99
NUP54-212ENST00000513248 ZC4H2Q9NQZ6 224 aa2.59□□□□□ -1.99
NUP54-212ENST00000513248 SLC2A8Q9NY64 477 aa2.59□□□□□ -1.99
NUP54-212ENST00000513248 FKBP11Q9NYL4 201 aa2.59□□□□□ -1.99
NUP54-212ENST00000513248 BET1LQ9NYM9 111 aa2.59□□□□□ -1.99
NUP54-212ENST00000513248 COMMD9Q9P000 198 aa2.59□□□□□ -1.99
NUP54-212ENST00000513248 COPZ2Q9P299 210 aa2.59□□□□□ -1.99
NUP54-212ENST00000513248 EXTL2Q9UBQ6 330 aa2.59□□□□□ -1.99
NUP54-212ENST00000513248 PRNDQ9UKY0 176 aa2.59□□□□□ -1.99
NUP54-212ENST00000513248 C14orf166Q9Y224 244 aaKnown RBP2.59□□□□□ -1.99
NUP54-212ENST00000513248 OR51B2Q9Y5P1 312 aa2.59□□□□□ -1.99
NUP54-212ENST00000513248 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP2.58□□□□□ -2
NUP54-212ENST00000513248 TRBV7-1A0A0A6YYK4 115 aa2.58□□□□□ -2
NUP54-212ENST00000513248 IGHV3-21A0A0B4J1V1 117 aa2.58□□□□□ -2
NUP54-212ENST00000513248 RNF222A6NCQ9 220 aa2.58□□□□□ -2
NUP54-212ENST00000513248 TRIM64CA6NLI5 447 aa2.58□□□□□ -2
NUP54-212ENST00000513248 DISC1C4P0D8 188 aa2.58□□□□□ -2
NUP54-212ENST00000513248 RBFOX2O43251 390 aaKnown RBP eCLIP2.58□□□□□ -2
NUP54-212ENST00000513248 SCGB2A1O75556 95 aa2.58□□□□□ -2
NUP54-212ENST00000513248 YIF1AO95070 293 aa2.58□□□□□ -2
NUP54-212ENST00000513248 RAB3DO95716 219 aa2.58□□□□□ -2
NUP54-212ENST00000513248 IFNA17P01571 189 aa2.58□□□□□ -2
NUP54-212ENST00000513248 IGLV1-51P01701 117 aa2.58□□□□□ -2
NUP54-212ENST00000513248 TRBV12-3P01733 135 aa2.58□□□□□ -2
NUP54-212ENST00000513248 HLA-AP01891 365 aaKnown RBP2.58□□□□□ -2
NUP54-212ENST00000513248 ELK1P19419 428 aa2.58□□□□□ -2
NUP54-212ENST00000513248 F2RP25116 425 aa2.58□□□□□ -2
NUP54-212ENST00000513248 GNRHRP30968 328 aa2.58□□□□□ -2
NUP54-212ENST00000513248 G6PCP35575 357 aa2.58□□□□□ -2
NUP54-212ENST00000513248 OR2B8PP59922 312 aa2.58□□□□□ -2
NUP54-212ENST00000513248 ERHP84090 104 aaKnown RBP2.58□□□□□ -2
NUP54-212ENST00000513248 IL18Q14116 193 aa2.58□□□□□ -2
NUP54-212ENST00000513248 MSMO1Q15800 293 aa2.58□□□□□ -2
NUP54-212ENST00000513248 CNPY1Q3B7I2 92 aa2.58□□□□□ -2
NUP54-212ENST00000513248 C9orf129Q5T035 196 aaKnown RBP2.58□□□□□ -2
NUP54-212ENST00000513248 ZNF57Q68EA5 555 aaPredicted RBP2.58□□□□□ -2
NUP54-212ENST00000513248 LAMTOR1Q6IAA8 161 aa2.58□□□□□ -2
NUP54-212ENST00000513248 C2orf66Q6UXQ4 117 aa2.58□□□□□ -2
NUP54-212ENST00000513248 SLC16A13Q7RTY0 426 aa2.58□□□□□ -2
NUP54-212ENST00000513248 HSD17B13Q7Z5P4 300 aaPredicted RBP2.58□□□□□ -2
NUP54-212ENST00000513248 CLVS1Q8IUQ0 354 aaPredicted RBP2.58□□□□□ -2
NUP54-212ENST00000513248 SLC38A6Q8IZM9 456 aa2.58□□□□□ -2
NUP54-212ENST00000513248 PUSL1Q8N0Z8 303 aaKnown RBP2.58□□□□□ -2
NUP54-212ENST00000513248 SLC35G3Q8N808 338 aa2.58□□□□□ -2
NUP54-212ENST00000513248 CCDC71LQ8N9Z2 235 aa2.58□□□□□ -2
NUP54-212ENST00000513248 OR52B4Q8NGK2 314 aa2.58□□□□□ -2
NUP54-212ENST00000513248 ZFAND1Q8TCF1 268 aa2.58□□□□□ -2
NUP54-212ENST00000513248 LSM10Q969L4 123 aaKnown RBP2.58□□□□□ -2
NUP54-212ENST00000513248 PINX1Q96BK5 328 aaKnown RBP2.58□□□□□ -2
NUP54-212ENST00000513248 DGCR14Q96DF8 476 aaKnown RBP2.58□□□□□ -2
NUP54-212ENST00000513248 TSC22D3Q99576 134 aa2.58□□□□□ -2
NUP54-212ENST00000513248 C20orf24Q9BUV8 137 aa2.58□□□□□ -2
NUP54-212ENST00000513248 C6orf62Q9GZU0 229 aaPredicted RBP2.58□□□□□ -2
NUP54-212ENST00000513248 SLC2A9Q9NRM0 540 aa2.58□□□□□ -2
NUP54-212ENST00000513248 UFC1Q9Y3C8 167 aa2.58□□□□□ -2
NUP54-212ENST00000513248 PRKDCP78527 4128 aaKnown RBP2.58□□□□□ -2
NUP54-212ENST00000513248 KIAA2026Q5HYC2 2103 aa2.57□□□□□ -2
NUP54-212ENST00000513248 RYR2Q92736 4967 aa2.57□□□□□ -2
NUP54-212ENST00000513248 TRBV9A0A0B4J1U6 114 aa2.57□□□□□ -2
NUP54-212ENST00000513248 TRAV3A0A0B4J244 114 aa2.57□□□□□ -2
NUP54-212ENST00000513248 TRBV7-9A0A0J9YWB2 115 aa2.57□□□□□ -2
NUP54-212ENST00000513248 TEX50A0A1B0GTY4 177 aa2.57□□□□□ -2
NUP54-212ENST00000513248 OR2T8A6NH00 312 aa2.57□□□□□ -2
NUP54-212ENST00000513248 C2orf70A6NJV1 201 aa2.57□□□□□ -2
NUP54-212ENST00000513248 OR11H12B2RN74 326 aa2.57□□□□□ -2
NUP54-212ENST00000513248 NUPL2O15504 423 aaKnown RBP2.57□□□□□ -2
NUP54-212ENST00000513248 ZNF207O43670 478 aaKnown RBP2.57□□□□□ -2
NUP54-212ENST00000513248 GNG7O60262 68 aa2.57□□□□□ -2
NUP54-212ENST00000513248 GABARAPO95166 117 aa2.57□□□□□ -2
NUP54-212ENST00000513248 BRI3O95415 125 aa2.57□□□□□ -2
NUP54-212ENST00000513248 CD3DP04234 171 aa2.57□□□□□ -2
NUP54-212ENST00000513248 ZNF735P0CB33 412 aa2.57□□□□□ -2
NUP54-212ENST00000513248 CTRB1P17538 263 aa2.57□□□□□ -2
Retrieved 100 of 20,778 RNA–protein pairs in 60.1 ms