RNA–Protein interactions for RNA: ENST00000508037.1

HMGB3P16-201, Transcript of high mobility group box 3 pseudogene 16, humanhuman

BASIC

Gene HMGB3P16, Length 287 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3P16-201ENST00000508037 CEACAM3P40198 252 aa3.98□□□□□ -1.77
HMGB3P16-201ENST00000508037 RPL27AP46776 148 aaKnown RBP3.98□□□□□ -1.77
HMGB3P16-201ENST00000508037 ZNF137PP52743 207 aa3.98□□□□□ -1.77
HMGB3P16-201ENST00000508037 GNG5P63218 68 aa3.98□□□□□ -1.77
HMGB3P16-201ENST00000508037 WT1-ASQ06250 92 aa3.98□□□□□ -1.77
HMGB3P16-201ENST00000508037 HSD52Q0P140 79 aa3.98□□□□□ -1.77
HMGB3P16-201ENST00000508037 PLGLAQ15195 96 aa3.98□□□□□ -1.77
HMGB3P16-201ENST00000508037 MLANAQ16655 118 aa3.98□□□□□ -1.77
HMGB3P16-201ENST00000508037 TMEM97Q5BJF2 176 aa3.98□□□□□ -1.77
HMGB3P16-201ENST00000508037 MUC21Q5SSG8 566 aa3.98□□□□□ -1.77
HMGB3P16-201ENST00000508037 LDLRAD2Q5SZI1 272 aa3.98□□□□□ -1.77
HMGB3P16-201ENST00000508037 AMMECR1LQ6DCA0 310 aa3.98□□□□□ -1.77
HMGB3P16-201ENST00000508037 C16orf54Q6UWD8 224 aa3.98□□□□□ -1.77
HMGB3P16-201ENST00000508037 IGFL2Q6UWQ7 119 aa3.98□□□□□ -1.77
HMGB3P16-201ENST00000508037 CIARTQ8N365 385 aaPredicted RBP3.98□□□□□ -1.77
HMGB3P16-201ENST00000508037 NUP37Q8NFH4 326 aa3.98□□□□□ -1.77
HMGB3P16-201ENST00000508037 OR5A1Q8NGJ0 315 aa3.98□□□□□ -1.77
HMGB3P16-201ENST00000508037 PRSS3P2Q8NHM4 247 aa3.98□□□□□ -1.77
HMGB3P16-201ENST00000508037 RND1Q92730 232 aa3.98□□□□□ -1.77
HMGB3P16-201ENST00000508037 SCNM1Q9BWG6 230 aa3.98□□□□□ -1.77
HMGB3P16-201ENST00000508037 FNDC4Q9H6D8 234 aaPredicted RBP3.98□□□□□ -1.77
HMGB3P16-201ENST00000508037 C19orf73Q9NVV2 129 aa3.98□□□□□ -1.77
HMGB3P16-201ENST00000508037 RPH3ALQ9UNE2 315 aa3.98□□□□□ -1.77
HMGB3P16-201ENST00000508037 CACNA1DQ01668 2161 aa3.97□□□□□ -1.77
HMGB3P16-201ENST00000508037 COL27A1Q8IZC6 1860 aaPredicted RBP3.97□□□□□ -1.77
HMGB3P16-201ENST00000508037 GAGE12BA1L429 117 aa3.97□□□□□ -1.77
HMGB3P16-201ENST00000508037 C7orf71A4D174 169 aa3.97□□□□□ -1.77
HMGB3P16-201ENST00000508037 OR2T8A6NH00 312 aa3.97□□□□□ -1.77
HMGB3P16-201ENST00000508037 C9orf118A6NHY6 69 aa3.97□□□□□ -1.77
HMGB3P16-201ENST00000508037 IGLV2-23P01705 113 aa3.97□□□□□ -1.77
HMGB3P16-201ENST00000508037 APOHP02749 345 aaPredicted RBP3.97□□□□□ -1.77
HMGB3P16-201ENST00000508037 PSG1P11464 419 aa3.97□□□□□ -1.77
HMGB3P16-201ENST00000508037 CD59P13987 128 aa3.97□□□□□ -1.77
HMGB3P16-201ENST00000508037 CEACAM8P31997 349 aaPredicted RBP3.97□□□□□ -1.77
HMGB3P16-201ENST00000508037 CCL11P51671 97 aa3.97□□□□□ -1.77
HMGB3P16-201ENST00000508037 HOXA4Q00056 320 aaPredicted RBP3.97□□□□□ -1.77
HMGB3P16-201ENST00000508037 PSG9Q00887 426 aa3.97□□□□□ -1.77
HMGB3P16-201ENST00000508037 RBPJQ06330 500 aa3.97□□□□□ -1.77
HMGB3P16-201ENST00000508037 LGALS9BQ3B8N2 356 aa3.97□□□□□ -1.77
HMGB3P16-201ENST00000508037 HES3Q5TGS1 186 aa3.97□□□□□ -1.77
HMGB3P16-201ENST00000508037 MORN5Q5VZ52 161 aa3.97□□□□□ -1.77
HMGB3P16-201ENST00000508037 LGALS9CQ6DKI2 356 aa3.97□□□□□ -1.77
HMGB3P16-201ENST00000508037 VHLLQ6RSH7 139 aa3.97□□□□□ -1.77
HMGB3P16-201ENST00000508037 ZNF493Q6ZR52 646 aa3.97□□□□□ -1.77
HMGB3P16-201ENST00000508037 PRNTQ86SH4 94 aa3.97□□□□□ -1.77
HMGB3P16-201ENST00000508037 ZADH2Q8N4Q0 377 aa3.97□□□□□ -1.77
HMGB3P16-201ENST00000508037 KIR3DL3Q8N743 410 aa3.97□□□□□ -1.77
HMGB3P16-201ENST00000508037 FAM216BQ8N7L0 139 aa3.97□□□□□ -1.77
HMGB3P16-201ENST00000508037 DEFB108BQ8NET1 73 aa3.97□□□□□ -1.77
HMGB3P16-201ENST00000508037 GTSF1Q8WW33 167 aa3.97□□□□□ -1.77
HMGB3P16-201ENST00000508037 URB1-AS1Q96HZ7 61 aa3.97□□□□□ -1.77
HMGB3P16-201ENST00000508037 RNF5Q99942 180 aa3.97□□□□□ -1.77
HMGB3P16-201ENST00000508037 RASL11BQ9BPW5 248 aa3.97□□□□□ -1.77
HMGB3P16-201ENST00000508037 ZNF747Q9BV97 191 aa3.97□□□□□ -1.77
HMGB3P16-201ENST00000508037 NPFFR1Q9GZQ6 430 aa3.97□□□□□ -1.77
HMGB3P16-201ENST00000508037 ARRDC1-AS1Q9H2J1 176 aa3.97□□□□□ -1.77
HMGB3P16-201ENST00000508037 A0A0C4DFX4 3053 aa3.97□□□□□ -1.77
HMGB3P16-201ENST00000508037 TET2Q6N021 2002 aaPredicted RBP3.97□□□□□ -1.77
HMGB3P16-201ENST00000508037 DNAJC13O75165 2243 aa3.97□□□□□ -1.77
HMGB3P16-201ENST00000508037 DIDO1Q9BTC0 2240 aaKnown RBP3.97□□□□□ -1.77
HMGB3P16-201ENST00000508037 PPIAL4EA0A075B759 164 aa3.96□□□□□ -1.78
HMGB3P16-201ENST00000508037 A0A1W2PNU3 283 aaPredicted RBP3.96□□□□□ -1.78
HMGB3P16-201ENST00000508037 A0A1W2PPI3 338 aa3.96□□□□□ -1.78
HMGB3P16-201ENST00000508037 A1L4Q6 167 aa3.96□□□□□ -1.78
HMGB3P16-201ENST00000508037 SH2D7A6NKC9 451 aaPredicted RBP3.96□□□□□ -1.78
HMGB3P16-201ENST00000508037 SHISA9B4DS77 424 aa3.96□□□□□ -1.78
HMGB3P16-201ENST00000508037 PPIAL4DF5H284 164 aa3.96□□□□□ -1.78
HMGB3P16-201ENST00000508037 K7EM74 188 aa3.96□□□□□ -1.78
HMGB3P16-201ENST00000508037 SMAD7O15105 426 aaKnown RBP3.96□□□□□ -1.78
HMGB3P16-201ENST00000508037 SLC25A17O43808 307 aa3.96□□□□□ -1.78
HMGB3P16-201ENST00000508037 PLAUP00749 431 aa3.96□□□□□ -1.78
HMGB3P16-201ENST00000508037 THBDP07204 575 aa3.96□□□□□ -1.78
HMGB3P16-201ENST00000508037 IGLC1P0CG04 106 aa3.96□□□□□ -1.78
HMGB3P16-201ENST00000508037 SMIM17P0DL12 118 aa3.96□□□□□ -1.78
HMGB3P16-201ENST00000508037 PPIAL4FP0DN26 164 aa3.96□□□□□ -1.78
HMGB3P16-201ENST00000508037 LYZP61626 148 aa3.96□□□□□ -1.78
HMGB3P16-201ENST00000508037 SSBP2P81877 361 aaPredicted RBP3.96□□□□□ -1.78
HMGB3P16-201ENST00000508037 NHLH1Q02575 133 aa3.96□□□□□ -1.78
HMGB3P16-201ENST00000508037 PDE6HQ13956 83 aa3.96□□□□□ -1.78
HMGB3P16-201ENST00000508037 C1orf185Q5T7R7 199 aa3.96□□□□□ -1.78
HMGB3P16-201ENST00000508037 TMEM200BQ69YZ2 307 aa3.96□□□□□ -1.78
HMGB3P16-201ENST00000508037 TMEM108Q6UXF1 575 aa3.96□□□□□ -1.78
HMGB3P16-201ENST00000508037 ZNF841Q6ZN19 808 aa3.96□□□□□ -1.78
HMGB3P16-201ENST00000508037 GOLT1AQ6ZVE7 132 aa3.96□□□□□ -1.78
HMGB3P16-201ENST00000508037 NEU4Q8WWR8 484 aaPredicted RBP3.96□□□□□ -1.78
HMGB3P16-201ENST00000508037 SRSF12Q8WXF0 261 aaKnown RBP3.96□□□□□ -1.78
HMGB3P16-201ENST00000508037 ST6GALNAC6Q969X2 333 aa3.96□□□□□ -1.78
HMGB3P16-201ENST00000508037 GUCD1Q96NT3 240 aa3.96□□□□□ -1.78
HMGB3P16-201ENST00000508037 KRTAP9-9Q9BYP9 154 aa3.96□□□□□ -1.78
HMGB3P16-201ENST00000508037 KRTAP9-4Q9BYQ2 154 aa3.96□□□□□ -1.78
HMGB3P16-201ENST00000508037 SLC25A39Q9BZJ4 359 aaPredicted RBP3.96□□□□□ -1.78
HMGB3P16-201ENST00000508037 RAB1BQ9H0U4 201 aa3.96□□□□□ -1.78
HMGB3P16-201ENST00000508037 AAMDCQ9H7C9 122 aa3.96□□□□□ -1.78
HMGB3P16-201ENST00000508037 NGBQ9NPG2 151 aa3.96□□□□□ -1.78
HMGB3P16-201ENST00000508037 F11RQ9Y624 299 aaKnown RBP3.96□□□□□ -1.78
HMGB3P16-201ENST00000508037 U3KQK5 164 aa3.96□□□□□ -1.78
HMGB3P16-201ENST00000508037 TRBV19A0A075B6N1 114 aa3.95□□□□□ -1.78
HMGB3P16-201ENST00000508037 A0A087X0K7 114 aa3.95□□□□□ -1.78
HMGB3P16-201ENST00000508037 TMEM189A5PLL7 270 aa3.95□□□□□ -1.78
HMGB3P16-201ENST00000508037 CGB1A6NKQ9 187 aa3.95□□□□□ -1.78
Retrieved 100 of 20,778 RNA–protein pairs in 90 ms