RNA–Protein interactions for RNA: ENST00000496826.1

USF3-204, Transcript of upstream transcription factor family member 3, humanhuman

TSL 1 (best)

Gene USF3, Length 8,397 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USF3-204ENST00000496826 HS3ST6Q96QI5 342 aa4.83□□□□□ -1.64
USF3-204ENST00000496826 IMUPQ9GZP8 106 aa4.83□□□□□ -1.64
USF3-204ENST00000496826 SCN4AP35499 1836 aa4.83□□□□□ -1.64
USF3-204ENST00000496826 CHD1O14646 1710 aa4.83□□□□□ -1.64
USF3-204ENST00000496826 CASP8AP2Q9UKL3 1982 aa4.83□□□□□ -1.64
USF3-204ENST00000496826 NKX2-6A6NCS4 301 aa4.83□□□□□ -1.64
USF3-204ENST00000496826 RPL15P61313 204 aaKnown RBP4.83□□□□□ -1.64
USF3-204ENST00000496826 EXOC3-AS1Q8N2X6 119 aa4.83□□□□□ -1.64
USF3-204ENST00000496826 FAM181AQ8N9Y4 354 aa4.83□□□□□ -1.64
USF3-204ENST00000496826 RNF126Q9BV68 326 aa4.83□□□□□ -1.64
USF3-204ENST00000496826 MRPL23Q16540 153 aaKnown RBP4.83□□□□□ -1.64
USF3-204ENST00000496826 SERTAD4-AS1Q5TG53 156 aa4.83□□□□□ -1.64
USF3-204ENST00000496826 MROH2AA6NES4 1674 aa4.83□□□□□ -1.64
USF3-204ENST00000496826 VWDEQ8N2E2 1590 aa4.83□□□□□ -1.64
USF3-204ENST00000496826 MST1P26927 711 aa4.83□□□□□ -1.64
USF3-204ENST00000496826 C20orf197Q8N268 126 aa4.83□□□□□ -1.64
USF3-204ENST00000496826 SLC25A29Q8N8R3 303 aa4.83□□□□□ -1.64
USF3-204ENST00000496826 LINC00312Q9Y6C7 94 aa4.83□□□□□ -1.64
USF3-204ENST00000496826 CXCL6P80162 114 aa4.83□□□□□ -1.64
USF3-204ENST00000496826 GFRA4Q9GZZ7 299 aa4.83□□□□□ -1.64
USF3-204ENST00000496826 ZNF71Q9NQZ8 489 aaPredicted RBP4.83□□□□□ -1.64
USF3-204ENST00000496826 PIKFYVEQ9Y2I7 2098 aa4.83□□□□□ -1.64
USF3-204ENST00000496826 TARBP1Q13395 1621 aaKnown RBP4.83□□□□□ -1.64
USF3-204ENST00000496826 H3BT86 120 aa4.82□□□□□ -1.64
USF3-204ENST00000496826 RAMP1O60894 148 aa4.82□□□□□ -1.64
USF3-204ENST00000496826 GFI1BQ5VTD9 330 aa4.82□□□□□ -1.64
USF3-204ENST00000496826 NABP1Q96AH0 204 aa4.82□□□□□ -1.64
USF3-204ENST00000496826 MYO16Q9Y6X6 1858 aa4.82□□□□□ -1.64
USF3-204ENST00000496826 IGHV3OR15-7A0A075B7D8 119 aa4.82□□□□□ -1.64
USF3-204ENST00000496826 EIF4EBP3O60516 100 aaPredicted RBP4.82□□□□□ -1.64
USF3-204ENST00000496826 BSPH1Q075Z2 132 aa4.82□□□□□ -1.64
USF3-204ENST00000496826 B4DSR2 109 aa4.82□□□□□ -1.64
USF3-204ENST00000496826 J3QRE1 110 aa4.82□□□□□ -1.64
USF3-204ENST00000496826 NDUFA1O15239 70 aa4.82□□□□□ -1.64
USF3-204ENST00000496826 IGHV3-7P01780 117 aa4.82□□□□□ -1.64
USF3-204ENST00000496826 LYL1P12980 280 aa4.82□□□□□ -1.64
USF3-204ENST00000496826 CLEC19AQ6UXS0 136 aa4.82□□□□□ -1.64
USF3-204ENST00000496826 Q6ZPB1 254 aaPredicted RBP4.82□□□□□ -1.64
USF3-204ENST00000496826 CEP170Q5SW79 1584 aa4.82□□□□□ -1.64
USF3-204ENST00000496826 MYO3AQ8NEV4 1616 aa4.82□□□□□ -1.64
USF3-204ENST00000496826 COL2A1P02458 1487 aaPredicted RBP4.82□□□□□ -1.64
USF3-204ENST00000496826 CXCL2P19875 107 aa4.82□□□□□ -1.64
USF3-204ENST00000496826 ZNF660Q6AZW8 331 aaPredicted RBP4.82□□□□□ -1.64
USF3-204ENST00000496826 C1orf122Q6ZSJ8 110 aa4.82□□□□□ -1.64
USF3-204ENST00000496826 TNRC6AQ8NDV7 1962 aaKnown RBP4.82□□□□□ -1.64
USF3-204ENST00000496826 DIP2CQ9Y2E4 1556 aa4.82□□□□□ -1.64
USF3-204ENST00000496826 IGKV2D-24A0A075B6R9 120 aa4.82□□□□□ -1.64
USF3-204ENST00000496826 SNHG28P0DPA3 235 aa4.82□□□□□ -1.64
USF3-204ENST00000496826 RPL18AQ02543 176 aaKnown RBP4.82□□□□□ -1.64
USF3-204ENST00000496826 ST6GALNAC3Q8NDV1 305 aa4.82□□□□□ -1.64
USF3-204ENST00000496826 C14orf144Q96I85 54 aa4.82□□□□□ -1.64
USF3-204ENST00000496826 MRPL27Q9P0M9 148 aaKnown RBP4.82□□□□□ -1.64
USF3-204ENST00000496826 Q6ZVQ6 151 aa4.82□□□□□ -1.64
USF3-204ENST00000496826 C5orf24Q7Z6I8 188 aa4.82□□□□□ -1.64
USF3-204ENST00000496826 MIXL1Q9H2W2 232 aa4.82□□□□□ -1.64
USF3-204ENST00000496826 IGHV3-15A0A0B4J1V0 119 aa4.82□□□□□ -1.64
USF3-204ENST00000496826 J3QLI3 93 aa4.82□□□□□ -1.64
USF3-204ENST00000496826 FOXS1O43638 330 aa4.82□□□□□ -1.64
USF3-204ENST00000496826 FOXF2Q12947 444 aa4.82□□□□□ -1.64
USF3-204ENST00000496826 FOXE3Q13461 319 aa4.82□□□□□ -1.64
USF3-204ENST00000496826 ADAMTSL5Q6ZMM2 481 aa4.82□□□□□ -1.64
USF3-204ENST00000496826 PLPPR2Q96GM1 343 aa4.82□□□□□ -1.64
USF3-204ENST00000496826 SPACA5Q96QH8 159 aa4.82□□□□□ -1.64
USF3-204ENST00000496826 DEPPQ9NTK1 212 aa4.82□□□□□ -1.64
USF3-204ENST00000496826 ZFC3H1O60293 1989 aaKnown RBP4.81□□□□□ -1.64
USF3-204ENST00000496826 FAM236DA0A1B0GTK5 79 aa4.81□□□□□ -1.64
USF3-204ENST00000496826 FAM236CP0DP71 79 aa4.81□□□□□ -1.64
USF3-204ENST00000496826 CCL7P80098 99 aa4.81□□□□□ -1.64
USF3-204ENST00000496826 PCOLCEQ15113 449 aa4.81□□□□□ -1.64
USF3-204ENST00000496826 ANKRD36CQ5JPF3 1778 aa4.81□□□□□ -1.64
USF3-204ENST00000496826 DUX4L9Q6RFH8 374 aaPredicted RBP4.81□□□□□ -1.64
USF3-204ENST00000496826 NEURL4Q96JN8 1562 aa4.81□□□□□ -1.64
USF3-204ENST00000496826 ICOSQ9Y6W8 199 aa4.81□□□□□ -1.64
USF3-204ENST00000496826 PLXNB1O43157 2135 aa4.81□□□□□ -1.64
USF3-204ENST00000496826 CARD19Q96LW7 228 aa4.81□□□□□ -1.64
USF3-204ENST00000496826 UBE2D3P61077 147 aa4.81□□□□□ -1.64
USF3-204ENST00000496826 DAZ4Q86SG3 579 aaKnown RBP4.81□□□□□ -1.64
USF3-204ENST00000496826 RNASE6Q93091 150 aaKnown RBP4.81□□□□□ -1.64
USF3-204ENST00000496826 DAZ1Q9NQZ3 744 aaKnown RBP4.81□□□□□ -1.64
USF3-204ENST00000496826 SPTAN1Q13813 2472 aaKnown RBP4.81□□□□□ -1.64
USF3-204ENST00000496826 TRAV12-2A0A075B6T6 113 aa4.81□□□□□ -1.64
USF3-204ENST00000496826 A0A1B0GTL3 188 aa4.81□□□□□ -1.64
USF3-204ENST00000496826 CRYGCP07315 174 aa4.81□□□□□ -1.64
USF3-204ENST00000496826 CCL4P13236 92 aa4.81□□□□□ -1.64
USF3-204ENST00000496826 UBE2V1Q13404 147 aa4.81□□□□□ -1.64
USF3-204ENST00000496826 KIAA0087Q14695 138 aa4.81□□□□□ -1.64
USF3-204ENST00000496826 FAM27BQ5VT28 67 aa4.81□□□□□ -1.64
USF3-204ENST00000496826 SLC25A45Q8N413 288 aa4.81□□□□□ -1.64
USF3-204ENST00000496826 DEFB124Q8NES8 71 aa4.81□□□□□ -1.64
USF3-204ENST00000496826 CCL13Q99616 98 aa4.81□□□□□ -1.64
USF3-204ENST00000496826 AKAP11Q9UKA4 1901 aa4.81□□□□□ -1.64
USF3-204ENST00000496826 BPY2O14599 106 aa4.81□□□□□ -1.64
USF3-204ENST00000496826 PLA2G2AP14555 144 aa4.81□□□□□ -1.64
USF3-204ENST00000496826 SP7Q8TDD2 431 aaPredicted RBP4.81□□□□□ -1.64
USF3-204ENST00000496826 LINC00474Q9P2X8 69 aa4.81□□□□□ -1.64
USF3-204ENST00000496826 MAP2P11137 1827 aaKnown RBP4.81□□□□□ -1.64
USF3-204ENST00000496826 ANK1P16157 1881 aa4.81□□□□□ -1.64
USF3-204ENST00000496826 IGHV3-64DA0A0J9YX35 117 aa4.81□□□□□ -1.64
USF3-204ENST00000496826 GREM1O60565 184 aa4.81□□□□□ -1.64
USF3-204ENST00000496826 FGF6P10767 208 aa4.81□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms