RNA–Protein interactions for RNA: ENST00000494566.5

CCDC88B-210, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 2,909 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-210ENST00000494566 IGF2BP2-AS1Q96M15 143 aa13.24□□□□□ -0.29
CCDC88B-210ENST00000494566 TPPP3Q9BW30 176 aa13.24□□□□□ -0.29
CCDC88B-210ENST00000494566 NGBQ9NPG2 151 aa13.24□□□□□ -0.29
CCDC88B-210ENST00000494566 PGPA6NDG6 321 aa13.23□□□□□ -0.29
CCDC88B-210ENST00000494566 OR8B2Q96RD0 313 aa13.23□□□□□ -0.29
CCDC88B-210ENST00000494566 TMEM133Q9H2Q1 129 aa13.23□□□□□ -0.29
CCDC88B-210ENST00000494566 SNAI2O43623 268 aa13.23□□□□□ -0.29
CCDC88B-210ENST00000494566 RBPJQ06330 500 aa13.23□□□□□ -0.29
CCDC88B-210ENST00000494566 IGKV1D-37A0A075B6S9 117 aa13.23□□□□□ -0.29
CCDC88B-210ENST00000494566 FNDC10F2Z333 226 aa13.23□□□□□ -0.29
CCDC88B-210ENST00000494566 NDUFB8O95169 186 aa13.23□□□□□ -0.29
CCDC88B-210ENST00000494566 IGLC2P0DOY2 106 aa13.23□□□□□ -0.29
CCDC88B-210ENST00000494566 IGLC3P0DOY3 106 aa13.23□□□□□ -0.29
CCDC88B-210ENST00000494566 MUC15Q8N387 334 aa13.23□□□□□ -0.29
CCDC88B-210ENST00000494566 OSTCQ9NRP0 149 aa13.23□□□□□ -0.29
CCDC88B-210ENST00000494566 SSUH2Q9Y2M2 353 aa13.23□□□□□ -0.29
CCDC88B-210ENST00000494566 IGHV2-26A0A0B4J1V2 119 aa13.22□□□□□ -0.29
CCDC88B-210ENST00000494566 MUC21A0A0G2JKD1 596 aa13.22□□□□□ -0.29
CCDC88B-210ENST00000494566 MUC21A0A140T8X8 626 aa13.22□□□□□ -0.29
CCDC88B-210ENST00000494566 PSMB11A5LHX3 300 aa13.22□□□□□ -0.29
CCDC88B-210ENST00000494566 UBE2G1P62253 170 aa13.22□□□□□ -0.29
CCDC88B-210ENST00000494566 MUC21Q5SSG8 566 aa13.22□□□□□ -0.29
CCDC88B-210ENST00000494566 PEX7O00628 323 aa13.22□□□□□ -0.29
CCDC88B-210ENST00000494566 COL5A1-AS1Q5SY13 56 aa13.22□□□□□ -0.29
CCDC88B-210ENST00000494566 OR4B1Q8NGF8 309 aa13.22□□□□□ -0.29
CCDC88B-210ENST00000494566 VKORC1Q9BQB6 163 aa13.22□□□□□ -0.29
CCDC88B-210ENST00000494566 LAMTOR2Q9Y2Q5 125 aa13.22□□□□□ -0.29
CCDC88B-210ENST00000494566 RAXQ9Y2V3 346 aa13.22□□□□□ -0.29
CCDC88B-210ENST00000494566 ARL2-SNX15V9GYD0 113 aa13.22□□□□□ -0.29
CCDC88B-210ENST00000494566 hDV102S1A0JD36 115 aa13.21□□□□□ -0.29
CCDC88B-210ENST00000494566 VMA21Q3ZAQ7 101 aa13.21□□□□□ -0.29
CCDC88B-210ENST00000494566 WDR73Q6P4I2 378 aa13.21□□□□□ -0.29
CCDC88B-210ENST00000494566 VSTM2AQ8TAG5 236 aa13.21□□□□□ -0.29
CCDC88B-210ENST00000494566 C22orf46C9J442 243 aa13.21□□□□□ -0.3
CCDC88B-210ENST00000494566 ZNF329Q86UD4 541 aa13.21□□□□□ -0.3
CCDC88B-210ENST00000494566 KAAG1Q9UBP8 84 aa13.21□□□□□ -0.3
CCDC88B-210ENST00000494566 SMIM27A0A1W2PRY6 76 aa13.2□□□□□ -0.3
CCDC88B-210ENST00000494566 IZUMO1RA6ND01 250 aa13.2□□□□□ -0.3
CCDC88B-210ENST00000494566 CCL21O00585 134 aa13.2□□□□□ -0.3
CCDC88B-210ENST00000494566 LINC00311Q8N616 119 aa13.2□□□□□ -0.3
CCDC88B-210ENST00000494566 RNF24Q9Y225 148 aa13.2□□□□□ -0.3
CCDC88B-210ENST00000494566 B9A039 149 aa13.2□□□□□ -0.3
CCDC88B-210ENST00000494566 M0QZK8 103 aa13.2□□□□□ -0.3
CCDC88B-210ENST00000494566 HLA-DQA1P01909 254 aa13.2□□□□□ -0.3
CCDC88B-210ENST00000494566 PRRX1P54821 245 aa13.2□□□□□ -0.3
CCDC88B-210ENST00000494566 RPL19P84098 196 aaKnown RBP13.2□□□□□ -0.3
CCDC88B-210ENST00000494566 FBXL15Q9H469 300 aa13.2□□□□□ -0.3
CCDC88B-210ENST00000494566 INSIG2Q9Y5U4 225 aa13.2□□□□□ -0.3
CCDC88B-210ENST00000494566 IGLC7A0M8Q6 106 aa13.19□□□□□ -0.3
CCDC88B-210ENST00000494566 IGLL1P15814 213 aa13.19□□□□□ -0.3
CCDC88B-210ENST00000494566 CTRLP40313 264 aa13.19□□□□□ -0.3
CCDC88B-210ENST00000494566 CACNG8Q8WXS5 425 aa13.19□□□□□ -0.3
CCDC88B-210ENST00000494566 TNFRSF19Q9NS68 423 aa13.19□□□□□ -0.3
CCDC88B-210ENST00000494566 ONECUT1Q9UBC0 465 aa13.19□□□□□ -0.3
CCDC88B-210ENST00000494566 UQCR10Q9UDW1 63 aa13.19□□□□□ -0.3
CCDC88B-210ENST00000494566 ITPR1Q14643 2758 aa13.19□□□□□ -0.3
CCDC88B-210ENST00000494566 LOC102724200A0A096LPH7 203 aaPredicted RBP13.19□□□□□ -0.3
CCDC88B-210ENST00000494566 ESDP10768 282 aa13.19□□□□□ -0.3
CCDC88B-210ENST00000494566 PTTG1IPP53801 180 aa13.19□□□□□ -0.3
CCDC88B-210ENST00000494566 FXYD7P58549 80 aa13.19□□□□□ -0.3
CCDC88B-210ENST00000494566 EXOC3-AS1Q8N2X6 119 aa13.19□□□□□ -0.3
CCDC88B-210ENST00000494566 ZNF596Q8TC21 504 aa13.19□□□□□ -0.3
CCDC88B-210ENST00000494566 PPIAL4CA0A0B4J2A2 164 aa13.18□□□□□ -0.3
CCDC88B-210ENST00000494566 TCRBV4S1A1TA0A5B7 111 aa13.18□□□□□ -0.3
CCDC88B-210ENST00000494566 FAM181BA6NEQ2 426 aa13.18□□□□□ -0.3
CCDC88B-210ENST00000494566 PPIAL4GP0DN37 164 aa13.18□□□□□ -0.3
CCDC88B-210ENST00000494566 LDLRAD2Q5SZI1 272 aa13.18□□□□□ -0.3
CCDC88B-210ENST00000494566 CIARTQ8N365 385 aaPredicted RBP13.18□□□□□ -0.3
CCDC88B-210ENST00000494566 HIVEP3Q5T1R4 2406 aa13.18□□□□□ -0.3
CCDC88B-210ENST00000494566 IGHV1-3A0A0C4DH29 117 aa13.18□□□□□ -0.3
CCDC88B-210ENST00000494566 A0A1W2PRE2 83 aa13.18□□□□□ -0.3
CCDC88B-210ENST00000494566 OR10J3Q5JRS4 329 aa13.18□□□□□ -0.3
CCDC88B-210ENST00000494566 PNKDQ8N490 385 aa13.18□□□□□ -0.3
CCDC88B-210ENST00000494566 MT-ND6P03923 174 aa13.17□□□□□ -0.3
CCDC88B-210ENST00000494566 RPL27AP46776 148 aaKnown RBP13.17□□□□□ -0.3
CCDC88B-210ENST00000494566 ZNF672Q499Z4 452 aaPredicted RBP13.17□□□□□ -0.3
CCDC88B-210ENST00000494566 FXYD5Q96DB9 178 aa13.17□□□□□ -0.3
CCDC88B-210ENST00000494566 CCL25O15444 150 aa13.17□□□□□ -0.3
CCDC88B-210ENST00000494566 IGLV1-47P01700 117 aa13.17□□□□□ -0.3
CCDC88B-210ENST00000494566 TSPOP30536 169 aa13.17□□□□□ -0.3
CCDC88B-210ENST00000494566 MC5RP33032 325 aa13.17□□□□□ -0.3
CCDC88B-210ENST00000494566 SUB1P53999 127 aaKnown RBP eCLIP13.17□□□□□ -0.3
CCDC88B-210ENST00000494566 LYZP61626 148 aa13.17□□□□□ -0.3
CCDC88B-210ENST00000494566 RNF151Q2KHN1 245 aa13.17□□□□□ -0.3
CCDC88B-210ENST00000494566 SSX8Q7RTT4 187 aa13.17□□□□□ -0.3
CCDC88B-210ENST00000494566 BUB1B-PAK6H3BSN5 160 aa13.16□□□□□ -0.3
CCDC88B-210ENST00000494566 CA7P43166 264 aa13.16□□□□□ -0.3
CCDC88B-210ENST00000494566 OR4A5Q8NH83 315 aa13.16□□□□□ -0.3
CCDC88B-210ENST00000494566 RBM14Q96PK6 669 aaKnown RBP13.16□□□□□ -0.3
CCDC88B-210ENST00000494566 HILPDAQ9Y5L2 63 aa13.16□□□□□ -0.3
CCDC88B-210ENST00000494566 TMSB15BA0A087X1C1 80 aa13.16□□□□□ -0.3
CCDC88B-210ENST00000494566 TRBV9A0A0B4J1U6 114 aa13.16□□□□□ -0.3
CCDC88B-210ENST00000494566 BTF3P20290 206 aaKnown RBP13.16□□□□□ -0.3
CCDC88B-210ENST00000494566 ARF6P62330 175 aa13.16□□□□□ -0.3
CCDC88B-210ENST00000494566 KLRD1Q13241 179 aa13.16□□□□□ -0.3
CCDC88B-210ENST00000494566 PRNTQ86SH4 94 aa13.16□□□□□ -0.3
CCDC88B-210ENST00000494566 SIGLEC9Q9Y336 463 aa13.16□□□□□ -0.3
CCDC88B-210ENST00000494566 PLGLAQ15195 96 aa13.16□□□□□ -0.3
CCDC88B-210ENST00000494566 FBLN7Q53RD9 439 aa13.16□□□□□ -0.3
CCDC88B-210ENST00000494566 RPEQ96AT9 228 aa13.16□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 40.3 ms