RNA–Protein interactions for RNA: ENST00000494080.5

CCDC88B-209, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 4,563 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-209ENST00000494080 PTPN13Q12923 2485 aa13.36□□□□□ -0.27
CCDC88B-209ENST00000494080 TRAV3A0A0B4J244 114 aa13.36□□□□□ -0.27
CCDC88B-209ENST00000494080 CCL25O15444 150 aa13.36□□□□□ -0.27
CCDC88B-209ENST00000494080 IGHV3-23P01764 117 aa13.36□□□□□ -0.27
CCDC88B-209ENST00000494080 AREGP15514 252 aa13.36□□□□□ -0.27
CCDC88B-209ENST00000494080 ATP5IP56385 69 aaPredicted RBP13.36□□□□□ -0.27
CCDC88B-209ENST00000494080 F2Z2F3 143 aa13.36□□□□□ -0.27
CCDC88B-209ENST00000494080 WT1P19544 449 aaPredicted RBP13.36□□□□□ -0.27
CCDC88B-209ENST00000494080 C2orf83Q53S99 150 aa13.36□□□□□ -0.27
CCDC88B-209ENST00000494080 RNF138Q8WVD3 245 aa13.36□□□□□ -0.27
CCDC88B-209ENST00000494080 DPF1Q92782 380 aa13.36□□□□□ -0.27
CCDC88B-209ENST00000494080 NPIPB11E5RHQ5 1161 aa13.36□□□□□ -0.27
CCDC88B-209ENST00000494080 LOXL3P58215 753 aa13.36□□□□□ -0.27
CCDC88B-209ENST00000494080 TMEM133Q9H2Q1 129 aa13.36□□□□□ -0.27
CCDC88B-209ENST00000494080 MRPL27Q9P0M9 148 aaKnown RBP13.35□□□□□ -0.27
CCDC88B-209ENST00000494080 TRBV6-6A0A0A6YYG2 114 aa13.35□□□□□ -0.27
CCDC88B-209ENST00000494080 FOXI3A8MTJ6 420 aaPredicted RBP13.35□□□□□ -0.27
CCDC88B-209ENST00000494080 TMEM160Q9NX00 188 aa13.35□□□□□ -0.27
CCDC88B-209ENST00000494080 NEUROG1Q92886 237 aa13.35□□□□□ -0.27
CCDC88B-209ENST00000494080 SIGMAR1Q99720 223 aa13.35□□□□□ -0.27
CCDC88B-209ENST00000494080 WDR86Q86TI4 376 aa13.35□□□□□ -0.27
CCDC88B-209ENST00000494080 NHP2Q9NX24 153 aaKnown RBP13.35□□□□□ -0.27
CCDC88B-209ENST00000494080 LY96Q9Y6Y9 160 aa13.35□□□□□ -0.27
CCDC88B-209ENST00000494080 SYS1-DBNDD2H3BUS1 97 aa13.34□□□□□ -0.27
CCDC88B-209ENST00000494080 LY6HO94772 140 aa13.34□□□□□ -0.27
CCDC88B-209ENST00000494080 CDKN1BP46527 198 aa13.34□□□□□ -0.27
CCDC88B-209ENST00000494080 ZNF138P52744 262 aa13.34□□□□□ -0.27
CCDC88B-209ENST00000494080 Q6ZR03 302 aa13.34□□□□□ -0.27
CCDC88B-209ENST00000494080 NUP35Q8NFH5 326 aa13.34□□□□□ -0.27
CCDC88B-209ENST00000494080 MYOD1P15172 320 aa13.34□□□□□ -0.27
CCDC88B-209ENST00000494080 CACNG7P62955 275 aa13.34□□□□□ -0.27
CCDC88B-209ENST00000494080 SPANXN1Q5VSR9 72 aa13.34□□□□□ -0.27
CCDC88B-209ENST00000494080 EPDR1Q9UM22 224 aa13.34□□□□□ -0.27
CCDC88B-209ENST00000494080 IGHV3-49A0A0A0MS15 119 aa13.34□□□□□ -0.27
CCDC88B-209ENST00000494080 C18orf32Q8TCD1 76 aa13.34□□□□□ -0.27
CCDC88B-209ENST00000494080 CHCHD1Q96BP2 118 aaKnown RBP13.34□□□□□ -0.27
CCDC88B-209ENST00000494080 LINC00479Q96M42 142 aa13.34□□□□□ -0.27
CCDC88B-209ENST00000494080 KLK15Q9H2R5 256 aa13.34□□□□□ -0.27
CCDC88B-209ENST00000494080 IGLV3-1P01715 115 aa13.33□□□□□ -0.28
CCDC88B-209ENST00000494080 CACNG8Q8WXS5 425 aa13.33□□□□□ -0.28
CCDC88B-209ENST00000494080 MS4A6AQ9H2W1 248 aa13.33□□□□□ -0.28
CCDC88B-209ENST00000494080 FOXA2Q9Y261 457 aaPredicted RBP13.33□□□□□ -0.28
CCDC88B-209ENST00000494080 TMEM238LA0A1B0GVL6 79 aa13.33□□□□□ -0.28
CCDC88B-209ENST00000494080 A6NJY4 79 aa13.33□□□□□ -0.28
CCDC88B-209ENST00000494080 IGLL1P15814 213 aa13.33□□□□□ -0.28
CCDC88B-209ENST00000494080 BMI1P35226 326 aa13.33□□□□□ -0.28
CCDC88B-209ENST00000494080 RPL15P61313 204 aaKnown RBP13.33□□□□□ -0.28
CCDC88B-209ENST00000494080 ADIPOQQ15848 244 aa13.33□□□□□ -0.28
CCDC88B-209ENST00000494080 NEU4Q8WWR8 484 aaPredicted RBP13.33□□□□□ -0.28
CCDC88B-209ENST00000494080 NCOR1P1Q9H4R4 102 aa13.33□□□□□ -0.28
CCDC88B-209ENST00000494080 TLN1Q9Y490 2541 aaKnown RBP13.33□□□□□ -0.28
CCDC88B-209ENST00000494080 ADAMTS9Q9P2N4 1935 aa13.33□□□□□ -0.28
CCDC88B-209ENST00000494080 SH2D7A6NKC9 451 aaPredicted RBP13.33□□□□□ -0.28
CCDC88B-209ENST00000494080 A0A0G2JLM5 398 aa13.32□□□□□ -0.28
CCDC88B-209ENST00000494080 ZNF672Q499Z4 452 aaPredicted RBP13.32□□□□□ -0.28
CCDC88B-209ENST00000494080 TMEM200BQ69YZ2 307 aa13.32□□□□□ -0.28
CCDC88B-209ENST00000494080 TTC9CQ8N5M4 171 aa13.32□□□□□ -0.28
CCDC88B-209ENST00000494080 COX6B1P14854 86 aa13.32□□□□□ -0.28
CCDC88B-209ENST00000494080 HERVK_113P61574 105 aa13.32□□□□□ -0.28
CCDC88B-209ENST00000494080 OR5A1Q8NGJ0 315 aa13.32□□□□□ -0.28
CCDC88B-209ENST00000494080 TMEM178BH3BS89 294 aa13.32□□□□□ -0.28
CCDC88B-209ENST00000494080 PIMREGQ9BSJ6 248 aa13.32□□□□□ -0.28
CCDC88B-209ENST00000494080 Q9H3A6 140 aa13.32□□□□□ -0.28
CCDC88B-209ENST00000494080 H7C2G1 150 aa13.32□□□□□ -0.28
CCDC88B-209ENST00000494080 CD5LO43866 347 aa13.32□□□□□ -0.28
CCDC88B-209ENST00000494080 PDLIM4P50479 330 aa13.32□□□□□ -0.28
CCDC88B-209ENST00000494080 MBNL3Q9NUK0 354 aaKnown RBP13.32□□□□□ -0.28
CCDC88B-209ENST00000494080 ZNRD1Q9P1U0 126 aa13.32□□□□□ -0.28
CCDC88B-209ENST00000494080 A0A1W2PNU3 283 aaPredicted RBP13.31□□□□□ -0.28
CCDC88B-209ENST00000494080 PRB4P10163 310 aaPredicted RBP13.31□□□□□ -0.28
CCDC88B-209ENST00000494080 PPP1R27Q86WC6 154 aa13.31□□□□□ -0.28
CCDC88B-209ENST00000494080 RCHY1Q96PM5 261 aa13.31□□□□□ -0.28
CCDC88B-209ENST00000494080 KIAA1549LQ6ZVL6 1849 aa13.31□□□□□ -0.28
CCDC88B-209ENST00000494080 CD69Q07108 199 aa13.31□□□□□ -0.28
CCDC88B-209ENST00000494080 LHFPL4Q7Z7J7 247 aa13.31□□□□□ -0.28
CCDC88B-209ENST00000494080 PRCDQ00LT1 54 aa13.31□□□□□ -0.28
CCDC88B-209ENST00000494080 GUSBP1Q15486 140 aa13.31□□□□□ -0.28
CCDC88B-209ENST00000494080 FMC1Q96HJ9 113 aa13.31□□□□□ -0.28
CCDC88B-209ENST00000494080 SCRT1Q9BWW7 348 aa13.31□□□□□ -0.28
CCDC88B-209ENST00000494080 PSG9Q00887 426 aa13.3□□□□□ -0.28
CCDC88B-209ENST00000494080 ATP5L2Q7Z4Y8 100 aa13.3□□□□□ -0.28
CCDC88B-209ENST00000494080 ORMDL3Q8N138 153 aa13.3□□□□□ -0.28
CCDC88B-209ENST00000494080 OR4X2Q8NGF9 303 aa13.3□□□□□ -0.28
CCDC88B-209ENST00000494080 MGPP08493 103 aa13.3□□□□□ -0.28
CCDC88B-209ENST00000494080 HSD52Q0P140 79 aa13.3□□□□□ -0.28
CCDC88B-209ENST00000494080 PIP4P1Q86T03 277 aa13.3□□□□□ -0.28
CCDC88B-209ENST00000494080 GAFA1Q96PS6 74 aa13.3□□□□□ -0.28
CCDC88B-209ENST00000494080 CCL19Q99731 98 aa13.3□□□□□ -0.28
CCDC88B-209ENST00000494080 OR11H12B2RN74 326 aa13.29□□□□□ -0.28
CCDC88B-209ENST00000494080 TIMM23O14925 209 aa13.29□□□□□ -0.28
CCDC88B-209ENST00000494080 SAMD5Q5TGI4 173 aa13.29□□□□□ -0.28
CCDC88B-209ENST00000494080 LYPD2Q6UXB3 125 aa13.29□□□□□ -0.28
CCDC88B-209ENST00000494080 OR11H1Q8NG94 326 aa13.29□□□□□ -0.28
CCDC88B-209ENST00000494080 OR11H2Q8NH07 326 aa13.29□□□□□ -0.28
CCDC88B-209ENST00000494080 ZNF418Q8TF45 676 aaPredicted RBP13.29□□□□□ -0.28
CCDC88B-209ENST00000494080 C16orf92Q96LL3 132 aa13.29□□□□□ -0.28
CCDC88B-209ENST00000494080 FOXC2Q99958 501 aa13.29□□□□□ -0.28
CCDC88B-209ENST00000494080 DGAT2L7PQ6IED9 249 aa13.29□□□□□ -0.28
CCDC88B-209ENST00000494080 RASL11AQ6T310 242 aa13.29□□□□□ -0.28
CCDC88B-209ENST00000494080 METTL26Q96S19 204 aa13.29□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 95 ms