RNA–Protein interactions for RNA: ENST00000491791.1

USP4-214, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3

Gene USP4, Length 821 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-214ENST00000491791 HILPDAQ9Y5L2 63 aa8.48□□□□□ -1.05
USP4-214ENST00000491791 V9GYV3 84 aa8.48□□□□□ -1.05
USP4-214ENST00000491791 TRBV6-1A0A0K0K1D8 114 aa8.47□□□□□ -1.05
USP4-214ENST00000491791 WI2-2373I1.2A0A1W2PRP0 233 aa8.47□□□□□ -1.05
USP4-214ENST00000491791 TOMM40O96008 361 aa8.47□□□□□ -1.05
USP4-214ENST00000491791 PSG1P11464 419 aa8.47□□□□□ -1.05
USP4-214ENST00000491791 BRS3P32247 399 aa8.47□□□□□ -1.05
USP4-214ENST00000491791 TMEM183BQ1AE95 376 aa8.47□□□□□ -1.05
USP4-214ENST00000491791 S100A7AQ86SG5 101 aa8.47□□□□□ -1.05
USP4-214ENST00000491791 HIST3H2BBQ8N257 126 aa8.47□□□□□ -1.05
USP4-214ENST00000491791 SGMS2Q8NHU3 365 aa8.47□□□□□ -1.05
USP4-214ENST00000491791 ARPC1AQ92747 370 aa8.47□□□□□ -1.05
USP4-214ENST00000491791 BPESC1Q9GZL8 116 aa8.47□□□□□ -1.05
USP4-214ENST00000491791 EPDR1Q9UM22 224 aa8.47□□□□□ -1.05
USP4-214ENST00000491791 HIGD1AQ9Y241 93 aa8.47□□□□□ -1.05
USP4-214ENST00000491791 TRBV9A0A0B4J1U6 114 aa8.46□□□□□ -1.06
USP4-214ENST00000491791 A0A1W2PPQ1 181 aa8.46□□□□□ -1.06
USP4-214ENST00000491791 PGPEP1LA6NFU8 196 aa8.46□□□□□ -1.06
USP4-214ENST00000491791 PEX7O00628 323 aa8.46□□□□□ -1.06
USP4-214ENST00000491791 NBEAP1P0C6P0 100 aa8.46□□□□□ -1.06
USP4-214ENST00000491791 RD3LP0DJH9 198 aa8.46□□□□□ -1.06
USP4-214ENST00000491791 PYYP10082 97 aa8.46□□□□□ -1.06
USP4-214ENST00000491791 HIST1H1EP10412 219 aaKnown RBP8.46□□□□□ -1.06
USP4-214ENST00000491791 EGR2P11161 476 aaPredicted RBP8.46□□□□□ -1.06
USP4-214ENST00000491791 HIST1H1BP16401 226 aaKnown RBP8.46□□□□□ -1.06
USP4-214ENST00000491791 CNN1P51911 297 aaKnown RBP8.46□□□□□ -1.06
USP4-214ENST00000491791 NDUFA6P56556 154 aa8.46□□□□□ -1.06
USP4-214ENST00000491791 LYPD1Q8N2G4 141 aa8.46□□□□□ -1.06
USP4-214ENST00000491791 ARL6IP6Q8N6S5 226 aa8.46□□□□□ -1.06
USP4-214ENST00000491791 Q8N9W7 124 aa8.46□□□□□ -1.06
USP4-214ENST00000491791 VN1R17PQ8TDU5 208 aa8.46□□□□□ -1.06
USP4-214ENST00000491791 RBM14Q96PK6 669 aaKnown RBP8.46□□□□□ -1.06
USP4-214ENST00000491791 ATP6V0BQ99437 205 aa8.46□□□□□ -1.06
USP4-214ENST00000491791 RASL11BQ9BPW5 248 aa8.46□□□□□ -1.06
USP4-214ENST00000491791 SHANK2-AS3Q9BTD1 123 aa8.46□□□□□ -1.06
USP4-214ENST00000491791 GAR1Q9NY12 217 aaKnown RBP8.46□□□□□ -1.06
USP4-214ENST00000491791 THYN1Q9P016 225 aa8.46□□□□□ -1.06
USP4-214ENST00000491791 A0A1W2PRD5 423 aa8.45□□□□□ -1.06
USP4-214ENST00000491791 A0A1W2PRF3 423 aa8.45□□□□□ -1.06
USP4-214ENST00000491791 A0A1W2PRM7 423 aa8.45□□□□□ -1.06
USP4-214ENST00000491791 IGHV3-48P01763 117 aa8.45□□□□□ -1.06
USP4-214ENST00000491791 TMEM11P17152 192 aa8.45□□□□□ -1.06
USP4-214ENST00000491791 ORM2P19652 201 aa8.45□□□□□ -1.06
USP4-214ENST00000491791 MFAP4P55083 255 aa8.45□□□□□ -1.06
USP4-214ENST00000491791 RPL19P84098 196 aaKnown RBP8.45□□□□□ -1.06
USP4-214ENST00000491791 DEFB113Q30KQ7 82 aa8.45□□□□□ -1.06
USP4-214ENST00000491791 FBLN7Q53RD9 439 aa8.45□□□□□ -1.06
USP4-214ENST00000491791 C19orf35Q6ZS72 473 aa8.45□□□□□ -1.06
USP4-214ENST00000491791 TMEM183AQ8IXX5 376 aa8.45□□□□□ -1.06
USP4-214ENST00000491791 ZNF491Q8N8L2 437 aa8.45□□□□□ -1.06
USP4-214ENST00000491791 C5orf17Q8NAS9 161 aa8.45□□□□□ -1.06
USP4-214ENST00000491791 NECAP1Q8NC96 275 aa8.45□□□□□ -1.06
USP4-214ENST00000491791 OR1B1Q8NGR6 318 aa8.45□□□□□ -1.06
USP4-214ENST00000491791 C10orf105Q8TEF2 133 aa8.45□□□□□ -1.06
USP4-214ENST00000491791 CHRDL1Q9BU40 450 aa8.45□□□□□ -1.06
USP4-214ENST00000491791 MLST8Q9BVC4 326 aa8.45□□□□□ -1.06
USP4-214ENST00000491791 SLC25A39Q9BZJ4 359 aaPredicted RBP8.45□□□□□ -1.06
USP4-214ENST00000491791 GSX1Q9H4S2 264 aaPredicted RBP8.45□□□□□ -1.06
USP4-214ENST00000491791 OTORQ9NRC9 128 aa8.45□□□□□ -1.06
USP4-214ENST00000491791 ZNF469Q96JG9 3925 aaPredicted RBP8.45□□□□□ -1.06
USP4-214ENST00000491791 IGHV7-81A0A0B4J1V7 117 aa8.44□□□□□ -1.06
USP4-214ENST00000491791 A0A0U1RQK1 487 aa8.44□□□□□ -1.06
USP4-214ENST00000491791 SMIM27A0A1W2PRY6 76 aa8.44□□□□□ -1.06
USP4-214ENST00000491791 ZNF320A2RRD8 509 aa8.44□□□□□ -1.06
USP4-214ENST00000491791 F8W735 103 aaPredicted RBP8.44□□□□□ -1.06
USP4-214ENST00000491791 H3BRN7 92 aa8.44□□□□□ -1.06
USP4-214ENST00000491791 NPFFO15130 113 aa8.44□□□□□ -1.06
USP4-214ENST00000491791 BRI3O95415 125 aa8.44□□□□□ -1.06
USP4-214ENST00000491791 CRIP2P52943 208 aaPredicted RBP8.44□□□□□ -1.06
USP4-214ENST00000491791 ERVFC1-1P60608 527 aa8.44□□□□□ -1.06
USP4-214ENST00000491791 NDPQ00604 133 aa8.44□□□□□ -1.06
USP4-214ENST00000491791 HES1Q14469 280 aa8.44□□□□□ -1.06
USP4-214ENST00000491791 RPEL1Q2QD12 228 aa8.44□□□□□ -1.06
USP4-214ENST00000491791 RASL11AQ6T310 242 aa8.44□□□□□ -1.06
USP4-214ENST00000491791 ZNF600Q6ZNG1 722 aa8.44□□□□□ -1.06
USP4-214ENST00000491791 FAM110DQ8TAY7 271 aaPredicted RBP8.44□□□□□ -1.06
USP4-214ENST00000491791 PIMREGQ9BSJ6 248 aa8.44□□□□□ -1.06
USP4-214ENST00000491791 GNB1LQ9BYB4 327 aa8.44□□□□□ -1.06
USP4-214ENST00000491791 MEGF9Q9H1U4 602 aa8.44□□□□□ -1.06
USP4-214ENST00000491791 C7orf69Q9H7B7 122 aa8.44□□□□□ -1.06
USP4-214ENST00000491791 AURKAIP1Q9NWT8 199 aaPredicted RBP8.44□□□□□ -1.06
USP4-214ENST00000491791 HRNRQ86YZ3 2850 aaPredicted RBP8.43□□□□□ -1.06
USP4-214ENST00000491791 CENPVL3A0A0U1RRI6 287 aa8.43□□□□□ -1.06
USP4-214ENST00000491791 MRPS12O15235 138 aaKnown RBP8.43□□□□□ -1.06
USP4-214ENST00000491791 PLXNB1O43157 2135 aa8.43□□□□□ -1.06
USP4-214ENST00000491791 SCGB2A1O75556 95 aa8.43□□□□□ -1.06
USP4-214ENST00000491791 MT-ND6P03923 174 aa8.43□□□□□ -1.06
USP4-214ENST00000491791 SAA4P35542 130 aa8.43□□□□□ -1.06
USP4-214ENST00000491791 DSCR9P59020 149 aa8.43□□□□□ -1.06
USP4-214ENST00000491791 PDE6HQ13956 83 aa8.43□□□□□ -1.06
USP4-214ENST00000491791 BAGE2Q86Y30 109 aa8.43□□□□□ -1.06
USP4-214ENST00000491791 OR5T1Q8NG75 326 aa8.43□□□□□ -1.06
USP4-214ENST00000491791 RNF125Q96EQ8 232 aa8.43□□□□□ -1.06
USP4-214ENST00000491791 FMC1Q96HJ9 113 aa8.43□□□□□ -1.06
USP4-214ENST00000491791 ATG101Q9BSB4 218 aa8.43□□□□□ -1.06
USP4-214ENST00000491791 BEX4Q9NWD9 120 aaPredicted RBP8.43□□□□□ -1.06
USP4-214ENST00000491791 ZNF492Q9P255 531 aa8.43□□□□□ -1.06
USP4-214ENST00000491791 NSD1Q96L73 2696 aaPredicted RBP8.42□□□□□ -1.06
USP4-214ENST00000491791 LTAP01374 205 aa8.42□□□□□ -1.06
USP4-214ENST00000491791 TCRAP04437 139 aa8.42□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 36.2 ms