RNA–Protein interactions for RNA: ENST00000489629.1

CPSF3-205, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 3

Gene CPSF3, Length 547 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-205ENST00000489629 DEFB128Q7Z7B8 93 aa0.65□□□□□ -2.31
CPSF3-205ENST00000489629 TRAPPC6BQ86SZ2 158 aa0.65□□□□□ -2.31
CPSF3-205ENST00000489629 SMIM20Q8N5G0 67 aa0.65□□□□□ -2.31
CPSF3-205ENST00000489629 LINC00311Q8N616 119 aa0.65□□□□□ -2.31
CPSF3-205ENST00000489629 ZNF418Q8TF45 676 aaPredicted RBP0.65□□□□□ -2.31
CPSF3-205ENST00000489629 GPR146Q96CH1 333 aa0.65□□□□□ -2.31
CPSF3-205ENST00000489629 HIST1H2BLQ99880 126 aa0.65□□□□□ -2.31
CPSF3-205ENST00000489629 ADAT1Q9BUB4 502 aaKnown RBP0.65□□□□□ -2.31
CPSF3-205ENST00000489629 TMEM126AQ9H061 195 aa0.65□□□□□ -2.31
CPSF3-205ENST00000489629 RNF122Q9H9V4 155 aa0.65□□□□□ -2.31
CPSF3-205ENST00000489629 PRNDQ9UKY0 176 aa0.65□□□□□ -2.31
CPSF3-205ENST00000489629 NUP98P52948 1817 aa0.65□□□□□ -2.31
CPSF3-205ENST00000489629 FLG2Q5D862 2391 aaPredicted RBP0.65□□□□□ -2.31
CPSF3-205ENST00000489629 RTL1A6NKG5 1358 aa0.65□□□□□ -2.31
CPSF3-205ENST00000489629 DIDO1Q9BTC0 2240 aaKnown RBP0.65□□□□□ -2.31
CPSF3-205ENST00000489629 ANKHD1Q8IWZ3 2542 aaKnown RBP0.65□□□□□ -2.31
CPSF3-205ENST00000489629 MCM3APO60318 1980 aa0.65□□□□□ -2.31
CPSF3-205ENST00000489629 RANBP2P49792 3224 aaKnown RBP0.64□□□□□ -2.31
CPSF3-205ENST00000489629 POLQO75417 2590 aa0.64□□□□□ -2.31
CPSF3-205ENST00000489629 EYSQ5T1H1 3165 aa0.64□□□□□ -2.31
CPSF3-205ENST00000489629 CHD3Q12873 2000 aaKnown RBP0.64□□□□□ -2.31
CPSF3-205ENST00000489629 RELNP78509 3460 aa0.64□□□□□ -2.31
CPSF3-205ENST00000489629 GPR98Q8WXG9 6306 aa0.64□□□□□ -2.31
CPSF3-205ENST00000489629 BIRC6Q9NR09 4857 aa0.64□□□□□ -2.31
CPSF3-205ENST00000489629 MUC2Q02817 5179 aa0.64□□□□□ -2.31
CPSF3-205ENST00000489629 MRPS14O60783 128 aaKnown RBP0.64□□□□□ -2.31
CPSF3-205ENST00000489629 MIFP14174 115 aa0.64□□□□□ -2.31
CPSF3-205ENST00000489629 INSL3P51460 131 aa0.64□□□□□ -2.31
CPSF3-205ENST00000489629 CRYBA4P53673 196 aa0.64□□□□□ -2.31
CPSF3-205ENST00000489629 TAS2R41P59536 307 aa0.64□□□□□ -2.31
CPSF3-205ENST00000489629 RAB4BP61018 213 aa0.64□□□□□ -2.31
CPSF3-205ENST00000489629 YPEL3P61236 119 aaPredicted RBP0.64□□□□□ -2.31
CPSF3-205ENST00000489629 CNBPP62633 177 aaKnown RBP0.64□□□□□ -2.31
CPSF3-205ENST00000489629 KRR1Q13601 381 aaKnown RBP0.64□□□□□ -2.31
CPSF3-205ENST00000489629 BRMS1LQ5PSV4 323 aa0.64□□□□□ -2.31
CPSF3-205ENST00000489629 C10orf55Q5SWW7 151 aa0.64□□□□□ -2.31
CPSF3-205ENST00000489629 PDZD9Q8IXQ8 264 aa0.64□□□□□ -2.31
CPSF3-205ENST00000489629 OR4D11Q8NGI4 311 aa0.64□□□□□ -2.31
CPSF3-205ENST00000489629 ZC2HC1AQ96GY0 325 aa0.64□□□□□ -2.31
CPSF3-205ENST00000489629 CARD19Q96LW7 228 aa0.64□□□□□ -2.31
CPSF3-205ENST00000489629 PRRT1Q99946 306 aa0.64□□□□□ -2.31
CPSF3-205ENST00000489629 GID8Q9NWU2 228 aa0.64□□□□□ -2.31
CPSF3-205ENST00000489629 TAS2R4Q9NYW5 299 aa0.64□□□□□ -2.31
CPSF3-205ENST00000489629 EPDR1Q9UM22 224 aa0.64□□□□□ -2.31
CPSF3-205ENST00000489629 UFC1Q9Y3C8 167 aa0.64□□□□□ -2.31
CPSF3-205ENST00000489629 BICRAQ9NZM4 1560 aa0.64□□□□□ -2.31
CPSF3-205ENST00000489629 POLEQ07864 2286 aa0.64□□□□□ -2.31
CPSF3-205ENST00000489629 STAB1Q9NY15 2570 aa0.64□□□□□ -2.31
CPSF3-205ENST00000489629 GOLGB1Q14789 3259 aaKnown RBP0.64□□□□□ -2.31
CPSF3-205ENST00000489629 BRCA2P51587 3418 aa0.64□□□□□ -2.31
CPSF3-205ENST00000489629 KIF13AQ9H1H9 1805 aa0.64□□□□□ -2.31
CPSF3-205ENST00000489629 RIC1Q4ADV7 1423 aa0.64□□□□□ -2.31
CPSF3-205ENST00000489629 ZFC3H1O60293 1989 aaKnown RBP0.63□□□□□ -2.31
CPSF3-205ENST00000489629 ASPMQ8IZT6 3477 aa0.63□□□□□ -2.31
CPSF3-205ENST00000489629 EIF3AQ14152 1382 aaKnown RBP0.63□□□□□ -2.31
CPSF3-205ENST00000489629 TRAV14DV4A0A0A6YYC5 116 aa0.63□□□□□ -2.31
CPSF3-205ENST00000489629 IGKV3D-7A0A0C4DH55 119 aa0.63□□□□□ -2.31
CPSF3-205ENST00000489629 IGKV3OR2-268A0A0C4DH90 116 aa0.63□□□□□ -2.31
CPSF3-205ENST00000489629 C19orf84I3L1E1 186 aa0.63□□□□□ -2.31
CPSF3-205ENST00000489629 J3QRK9 145 aa0.63□□□□□ -2.31
CPSF3-205ENST00000489629 TMEM256-PLSCR3K7ERE1 68 aa0.63□□□□□ -2.31
CPSF3-205ENST00000489629 CST8O60676 142 aa0.63□□□□□ -2.31
CPSF3-205ENST00000489629 ATG12O94817 140 aa0.63□□□□□ -2.31
CPSF3-205ENST00000489629 UBL3O95164 117 aa0.63□□□□□ -2.31
CPSF3-205ENST00000489629 GADD45GO95257 159 aa0.63□□□□□ -2.31
CPSF3-205ENST00000489629 CSN2P05814 226 aa0.63□□□□□ -2.31
CPSF3-205ENST00000489629 S100A5P33763 92 aa0.63□□□□□ -2.31
CPSF3-205ENST00000489629 GNG3P63215 75 aa0.63□□□□□ -2.31
CPSF3-205ENST00000489629 EIF5AP63241 154 aaKnown RBP0.63□□□□□ -2.31
CPSF3-205ENST00000489629 RPL19P84098 196 aaKnown RBP0.63□□□□□ -2.31
CPSF3-205ENST00000489629 PDE6HQ13956 83 aa0.63□□□□□ -2.31
CPSF3-205ENST00000489629 SNCBQ16143 134 aa0.63□□□□□ -2.31
CPSF3-205ENST00000489629 ESRGQ1W209 222 aa0.63□□□□□ -2.31
CPSF3-205ENST00000489629 C10orf105Q8TEF2 133 aa0.63□□□□□ -2.31
CPSF3-205ENST00000489629 FAM172AQ8WUF8 416 aa0.63□□□□□ -2.31
CPSF3-205ENST00000489629 PAIP2Q9BPZ3 127 aaKnown RBP0.63□□□□□ -2.31
CPSF3-205ENST00000489629 GINS3Q9BRX5 216 aa0.63□□□□□ -2.31
CPSF3-205ENST00000489629 PRADC1Q9BSG0 188 aa0.63□□□□□ -2.31
CPSF3-205ENST00000489629 BCL2L10Q9HD36 194 aa0.63□□□□□ -2.31
CPSF3-205ENST00000489629 ACER3Q9NUN7 267 aa0.63□□□□□ -2.31
CPSF3-205ENST00000489629 STOML2Q9UJZ1 356 aa0.63□□□□□ -2.31
CPSF3-205ENST00000489629 PCTPQ9UKL6 214 aa0.63□□□□□ -2.31
CPSF3-205ENST00000489629 ASB4Q9Y574 426 aa0.63□□□□□ -2.31
CPSF3-205ENST00000489629 PTPRFP10586 1907 aa0.63□□□□□ -2.31
CPSF3-205ENST00000489629 NOTCH1P46531 2555 aa0.63□□□□□ -2.31
CPSF3-205ENST00000489629 SPTBN4Q9H254 2564 aa0.63□□□□□ -2.31
CPSF3-205ENST00000489629 NAV3Q8IVL0 2385 aa0.63□□□□□ -2.31
CPSF3-205ENST00000489629 FMN1Q68DA7 1419 aa0.63□□□□□ -2.31
CPSF3-205ENST00000489629 HYDINQ4G0P3 5121 aa0.62□□□□□ -2.31
CPSF3-205ENST00000489629 KDM5AP29375 1690 aaKnown RBP0.62□□□□□ -2.31
CPSF3-205ENST00000489629 MAP1BP46821 2468 aaKnown RBP0.62□□□□□ -2.31
CPSF3-205ENST00000489629 CCDC168Q8NDH2 2452 aa0.62□□□□□ -2.31
CPSF3-205ENST00000489629 C2CD3Q4AC94 2353 aa0.62□□□□□ -2.31
CPSF3-205ENST00000489629 WDFY4Q6ZS81 3184 aa0.62□□□□□ -2.31
CPSF3-205ENST00000489629 HCRTO43612 131 aa0.62□□□□□ -2.31
CPSF3-205ENST00000489629 OR1I1O60431 355 aa0.62□□□□□ -2.31
CPSF3-205ENST00000489629 BANF1O75531 89 aa0.62□□□□□ -2.31
CPSF3-205ENST00000489629 IFNA1P01562 189 aa0.62□□□□□ -2.31
CPSF3-205ENST00000489629 CRHP06850 196 aa0.62□□□□□ -2.31
CPSF3-205ENST00000489629 GLRXP35754 106 aa0.62□□□□□ -2.31
Retrieved 100 of 20,778 RNA–protein pairs in 47.4 ms