RNA–Protein interactions for RNA: ENST00000489156.1

SYNE1-227, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 1,891 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-227ENST00000489156 CYB561D1Q8N8Q1 229 aa12.36□□□□□ -0.43
SYNE1-227ENST00000489156 NOL4LQ96MY1 436 aaPredicted RBP12.36□□□□□ -0.43
SYNE1-227ENST00000489156 OR2C1O95371 312 aa12.36□□□□□ -0.43
SYNE1-227ENST00000489156 CD81P60033 236 aa12.36□□□□□ -0.43
SYNE1-227ENST00000489156 GUCA2BQ16661 112 aa12.36□□□□□ -0.43
SYNE1-227ENST00000489156 S100A7AQ86SG5 101 aa12.36□□□□□ -0.43
SYNE1-227ENST00000489156 Q8WTZ3 238 aa12.36□□□□□ -0.43
SYNE1-227ENST00000489156 EEF1AKMT3Q96AZ1 226 aa12.36□□□□□ -0.43
SYNE1-227ENST00000489156 FAM167A-AS1Q96KT0 104 aa12.36□□□□□ -0.43
SYNE1-227ENST00000489156 MRPL27Q9P0M9 148 aaKnown RBP12.36□□□□□ -0.43
SYNE1-227ENST00000489156 HIGD1AQ9Y241 93 aa12.36□□□□□ -0.43
SYNE1-227ENST00000489156 NUPL2O15504 423 aaKnown RBP12.35□□□□□ -0.43
SYNE1-227ENST00000489156 OR7C2O60412 319 aa12.35□□□□□ -0.43
SYNE1-227ENST00000489156 CTSGP08311 255 aa12.35□□□□□ -0.43
SYNE1-227ENST00000489156 ZNF491Q8N8L2 437 aa12.35□□□□□ -0.43
SYNE1-227ENST00000489156 LINC01006Q8NI28 216 aa12.35□□□□□ -0.43
SYNE1-227ENST00000489156 ZNF503Q96F45 646 aa12.35□□□□□ -0.43
SYNE1-227ENST00000489156 UHRF2Q96PU4 802 aa12.35□□□□□ -0.43
SYNE1-227ENST00000489156 SLC25A2Q9BXI2 301 aa12.35□□□□□ -0.43
SYNE1-227ENST00000489156 SERTAD4Q9NUC0 356 aa12.35□□□□□ -0.43
SYNE1-227ENST00000489156 S4R3C0 116 aa12.35□□□□□ -0.43
SYNE1-227ENST00000489156 WI2-2373I1.2A0A1W2PRP0 233 aa12.34□□□□□ -0.43
SYNE1-227ENST00000489156 C11orf94C9JXX5 98 aa12.34□□□□□ -0.43
SYNE1-227ENST00000489156 PDE6DO43924 150 aa12.34□□□□□ -0.43
SYNE1-227ENST00000489156 NDUFA7O95182 113 aa12.34□□□□□ -0.43
SYNE1-227ENST00000489156 LYZP61626 148 aa12.34□□□□□ -0.43
SYNE1-227ENST00000489156 ATP5G2Q06055 141 aa12.34□□□□□ -0.43
SYNE1-227ENST00000489156 MORN5Q5VZ52 161 aa12.34□□□□□ -0.43
SYNE1-227ENST00000489156 RNF125Q96EQ8 232 aa12.34□□□□□ -0.43
SYNE1-227ENST00000489156 USMG5Q96IX5 58 aa12.34□□□□□ -0.43
SYNE1-227ENST00000489156 C16orf95Q9H693 158 aa12.34□□□□□ -0.43
SYNE1-227ENST00000489156 OR2T8A6NH00 312 aa12.34□□□□□ -0.43
SYNE1-227ENST00000489156 KRTAP24-1Q3LI83 254 aa12.34□□□□□ -0.43
SYNE1-227ENST00000489156 OR5AU1Q8NGC0 362 aa12.34□□□□□ -0.43
SYNE1-227ENST00000489156 MS4A10Q96PG2 267 aa12.34□□□□□ -0.43
SYNE1-227ENST00000489156 IGLV1-40P01703 118 aa12.33□□□□□ -0.44
SYNE1-227ENST00000489156 TRGV3P03979 118 aa12.33□□□□□ -0.44
SYNE1-227ENST00000489156 CFHR3Q02985 330 aa12.33□□□□□ -0.44
SYNE1-227ENST00000489156 CST9LP1Q5W188 147 aa12.33□□□□□ -0.44
SYNE1-227ENST00000489156 FAM90A2PQ658T7 463 aa12.33□□□□□ -0.44
SYNE1-227ENST00000489156 OR4F5Q8NH21 305 aa12.33□□□□□ -0.44
SYNE1-227ENST00000489156 OR4F4Q96R69 305 aa12.33□□□□□ -0.44
SYNE1-227ENST00000489156 OR51M1Q9H341 326 aa12.33□□□□□ -0.44
SYNE1-227ENST00000489156 FBN1P35555 2871 aaKnown RBP12.33□□□□□ -0.44
SYNE1-227ENST00000489156 TRAV5A0A0B4J249 113 aa12.32□□□□□ -0.44
SYNE1-227ENST00000489156 FAM74A7A6NL05 159 aa12.32□□□□□ -0.44
SYNE1-227ENST00000489156 IGHV3-23P01764 117 aa12.32□□□□□ -0.44
SYNE1-227ENST00000489156 IL4P05112 153 aa12.32□□□□□ -0.44
SYNE1-227ENST00000489156 CLEC3BP05452 202 aa12.32□□□□□ -0.44
SYNE1-227ENST00000489156 UBE2G2P60604 165 aa12.32□□□□□ -0.44
SYNE1-227ENST00000489156 FAM74A3Q4VXF1 159 aa12.32□□□□□ -0.44
SYNE1-227ENST00000489156 CCDC140Q96MF4 163 aa12.32□□□□□ -0.44
SYNE1-227ENST00000489156 PAXXQ9BUH6 204 aa12.32□□□□□ -0.44
SYNE1-227ENST00000489156 SLC25A39Q9BZJ4 359 aaPredicted RBP12.32□□□□□ -0.44
SYNE1-227ENST00000489156 NKX6-2Q9C056 277 aaPredicted RBP12.32□□□□□ -0.44
SYNE1-227ENST00000489156 RNF24Q9Y225 148 aa12.32□□□□□ -0.44
SYNE1-227ENST00000489156 A0A1W2PRE2 83 aa12.31□□□□□ -0.44
SYNE1-227ENST00000489156 TMEM89A2RUT3 159 aa12.31□□□□□ -0.44
SYNE1-227ENST00000489156 F6UZH7 168 aa12.31□□□□□ -0.44
SYNE1-227ENST00000489156 S100A7P31151 101 aa12.31□□□□□ -0.44
SYNE1-227ENST00000489156 ADMP35318 185 aa12.31□□□□□ -0.44
SYNE1-227ENST00000489156 NIPSNAP3BQ9BS92 247 aa12.31□□□□□ -0.44
SYNE1-227ENST00000489156 A0A0G2JLM5 398 aa12.31□□□□□ -0.44
SYNE1-227ENST00000489156 GPR183P32249 361 aa12.31□□□□□ -0.44
SYNE1-227ENST00000489156 CEBPGP53567 150 aa12.31□□□□□ -0.44
SYNE1-227ENST00000489156 UBE2L3P68036 154 aaKnown RBP12.31□□□□□ -0.44
SYNE1-227ENST00000489156 C10orf99Q6UWK7 81 aa12.31□□□□□ -0.44
SYNE1-227ENST00000489156 ZNF600Q6ZNG1 722 aa12.31□□□□□ -0.44
SYNE1-227ENST00000489156 ZNF329Q86UD4 541 aa12.31□□□□□ -0.44
SYNE1-227ENST00000489156 CLRN3Q8NCR9 226 aa12.31□□□□□ -0.44
SYNE1-227ENST00000489156 CHRDL1Q9BU40 450 aa12.31□□□□□ -0.44
SYNE1-227ENST00000489156 RNF114Q9Y508 228 aa12.31□□□□□ -0.44
SYNE1-227ENST00000489156 OR10J4P0C629 311 aa12.3□□□□□ -0.44
SYNE1-227ENST00000489156 TPPP2P59282 170 aa12.3□□□□□ -0.44
SYNE1-227ENST00000489156 ATRAIDQ6UW56 229 aa12.3□□□□□ -0.44
SYNE1-227ENST00000489156 SHANK2-AS3Q9BTD1 123 aa12.3□□□□□ -0.44
SYNE1-227ENST00000489156 TMEM14CQ9P0S9 112 aa12.3□□□□□ -0.44
SYNE1-227ENST00000489156 YTHDF2Q9Y5A9 579 aaKnown RBP12.3□□□□□ -0.44
SYNE1-227ENST00000489156 CLPSL1A2RUU4 121 aa12.29□□□□□ -0.44
SYNE1-227ENST00000489156 H3BQ15 152 aa12.29□□□□□ -0.44
SYNE1-227ENST00000489156 HAX1O00165 279 aa12.29□□□□□ -0.44
SYNE1-227ENST00000489156 TGOLN2O43493 480 aa12.29□□□□□ -0.44
SYNE1-227ENST00000489156 IGHG4P01861 327 aa12.29□□□□□ -0.44
SYNE1-227ENST00000489156 ATP5G3P48201 142 aa12.29□□□□□ -0.44
SYNE1-227ENST00000489156 RELQ04864 619 aaPredicted RBP12.29□□□□□ -0.44
SYNE1-227ENST00000489156 CLEC19AQ6UXS0 136 aa12.29□□□□□ -0.44
SYNE1-227ENST00000489156 FXYD5Q96DB9 178 aa12.29□□□□□ -0.44
SYNE1-227ENST00000489156 PUS1Q9Y606 427 aaKnown RBP eCLIP12.29□□□□□ -0.44
SYNE1-227ENST00000489156 H3BRN7 92 aa12.29□□□□□ -0.44
SYNE1-227ENST00000489156 SCO1O75880 301 aa12.29□□□□□ -0.44
SYNE1-227ENST00000489156 PNRC1Q12796 327 aaPredicted RBP12.29□□□□□ -0.44
SYNE1-227ENST00000489156 FAM209BQ5JX69 171 aa12.29□□□□□ -0.44
SYNE1-227ENST00000489156 ZNF727A8MUV8 499 aa12.28□□□□□ -0.44
SYNE1-227ENST00000489156 BMPR1BO00238 502 aa12.28□□□□□ -0.44
SYNE1-227ENST00000489156 PYYP10082 97 aa12.28□□□□□ -0.44
SYNE1-227ENST00000489156 PF4V1P10720 104 aa12.28□□□□□ -0.44
SYNE1-227ENST00000489156 RAB9AP51151 201 aa12.28□□□□□ -0.44
SYNE1-227ENST00000489156 FOXL1Q12952 345 aa12.28□□□□□ -0.44
SYNE1-227ENST00000489156 USF2Q15853 346 aaPredicted RBP12.28□□□□□ -0.44
SYNE1-227ENST00000489156 ZNF343Q6P1L6 599 aa12.28□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 63.5 ms