RNA–Protein interactions for RNA: ENST00000488896.1

PTPN4-212, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 4

Gene PTPN4, Length 575 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-212ENST00000488896 FAM74A1Q5RGS3 127 aa0.6□□□□□ -2.31
PTPN4-212ENST00000488896 C12orf45Q8N5I9 185 aaPredicted RBP0.6□□□□□ -2.31
PTPN4-212ENST00000488896 C3orf56Q8N813 242 aa0.6□□□□□ -2.31
PTPN4-212ENST00000488896 ST6GALNAC3Q8NDV1 305 aa0.6□□□□□ -2.31
PTPN4-212ENST00000488896 OR4C6Q8NH72 309 aa0.6□□□□□ -2.31
PTPN4-212ENST00000488896 OR13C6PQ8NH95 151 aa0.6□□□□□ -2.31
PTPN4-212ENST00000488896 PPTC7Q8NI37 304 aa0.6□□□□□ -2.31
PTPN4-212ENST00000488896 TMEM254Q8TBM7 123 aa0.6□□□□□ -2.31
PTPN4-212ENST00000488896 TEX47Q8TBZ9 253 aa0.6□□□□□ -2.31
PTPN4-212ENST00000488896 ZNF418Q8TF45 676 aaPredicted RBP0.6□□□□□ -2.31
PTPN4-212ENST00000488896 AP3S1Q92572 193 aa0.6□□□□□ -2.31
PTPN4-212ENST00000488896 CCDC94Q9BW85 323 aaPredicted RBP0.6□□□□□ -2.31
PTPN4-212ENST00000488896 IMUPQ9GZP8 106 aa0.6□□□□□ -2.31
PTPN4-212ENST00000488896 TLNRD1Q9H1K6 362 aa0.6□□□□□ -2.31
PTPN4-212ENST00000488896 RASL12Q9NYN1 266 aa0.6□□□□□ -2.31
PTPN4-212ENST00000488896 MED11Q9P086 117 aa0.6□□□□□ -2.31
PTPN4-212ENST00000488896 STOML2Q9UJZ1 356 aa0.6□□□□□ -2.31
PTPN4-212ENST00000488896 SSR3Q9UNL2 185 aa0.6□□□□□ -2.31
PTPN4-212ENST00000488896 LY96Q9Y6Y9 160 aa0.6□□□□□ -2.31
PTPN4-212ENST00000488896 EML5Q05BV3 1969 aa0.59□□□□□ -2.31
PTPN4-212ENST00000488896 ECM29Q5VYK3 1845 aa0.59□□□□□ -2.31
PTPN4-212ENST00000488896 COL4A5P29400 1685 aa0.59□□□□□ -2.31
PTPN4-212ENST00000488896 TRBV19A0A075B6N1 114 aa0.59□□□□□ -2.31
PTPN4-212ENST00000488896 TRAV12-1A0A0B4J245 112 aa0.59□□□□□ -2.31
PTPN4-212ENST00000488896 TRAV4A0A0B4J268 109 aa0.59□□□□□ -2.31
PTPN4-212ENST00000488896 IGKV1-9A0A0C4DH69 117 aa0.59□□□□□ -2.31
PTPN4-212ENST00000488896 TCRBV4S1A1TA0A5B7 111 aa0.59□□□□□ -2.31
PTPN4-212ENST00000488896 H7C1C5 153 aa0.59□□□□□ -2.31
PTPN4-212ENST00000488896 M0R233 179 aa0.59□□□□□ -2.31
PTPN4-212ENST00000488896 AIPO00170 330 aa0.59□□□□□ -2.31
PTPN4-212ENST00000488896 LYZL6O75951 148 aa0.59□□□□□ -2.31
PTPN4-212ENST00000488896 TAS2R41P59536 307 aa0.59□□□□□ -2.31
PTPN4-212ENST00000488896 HSPE1P61604 102 aaKnown RBP0.59□□□□□ -2.31
PTPN4-212ENST00000488896 ARF6P62330 175 aa0.59□□□□□ -2.31
PTPN4-212ENST00000488896 LCN6P62502 163 aa0.59□□□□□ -2.31
PTPN4-212ENST00000488896 UBE2BP63146 152 aa0.59□□□□□ -2.31
PTPN4-212ENST00000488896 RPL19P84098 196 aaKnown RBP0.59□□□□□ -2.31
PTPN4-212ENST00000488896 GKN2Q86XP6 184 aa0.59□□□□□ -2.31
PTPN4-212ENST00000488896 Q8IYB0 196 aa0.59□□□□□ -2.31
PTPN4-212ENST00000488896 EXOC3-AS1Q8N2X6 119 aa0.59□□□□□ -2.31
PTPN4-212ENST00000488896 PXT1Q8NFP0 134 aa0.59□□□□□ -2.31
PTPN4-212ENST00000488896 C4orf3Q8WVX3 66 aa0.59□□□□□ -2.31
PTPN4-212ENST00000488896 DYDC1Q8WWB3 177 aa0.59□□□□□ -2.31
PTPN4-212ENST00000488896 OBSCN-AS1Q96MR7 158 aa0.59□□□□□ -2.31
PTPN4-212ENST00000488896 GPER1Q99527 375 aa0.59□□□□□ -2.31
PTPN4-212ENST00000488896 PARVBQ9HBI1 364 aa0.59□□□□□ -2.31
PTPN4-212ENST00000488896 SS18L2Q9UHA2 77 aa0.59□□□□□ -2.31
PTPN4-212ENST00000488896 PYCARDQ9ULZ3 195 aa0.59□□□□□ -2.31
PTPN4-212ENST00000488896 HS3ST2Q9Y278 367 aa0.59□□□□□ -2.31
PTPN4-212ENST00000488896 CEP192Q8TEP8 1941 aa0.59□□□□□ -2.32
PTPN4-212ENST00000488896 TOPBP1Q92547 1522 aa0.59□□□□□ -2.32
PTPN4-212ENST00000488896 MYO5AQ9Y4I1 1855 aaKnown RBP0.58□□□□□ -2.32
PTPN4-212ENST00000488896 MDN1Q9NU22 5596 aa0.58□□□□□ -2.32
PTPN4-212ENST00000488896 LAMB4A4D0S4 1761 aa0.58□□□□□ -2.32
PTPN4-212ENST00000488896 PIK3C2GO75747 1445 aa0.58□□□□□ -2.32
PTPN4-212ENST00000488896 RIC1Q4ADV7 1423 aa0.58□□□□□ -2.32
PTPN4-212ENST00000488896 TNRC6AQ8NDV7 1962 aaKnown RBP0.58□□□□□ -2.32
PTPN4-212ENST00000488896 IGKV2D-29A0A075B6S2 120 aaPredicted RBP0.58□□□□□ -2.32
PTPN4-212ENST00000488896 RIIAD1A6NNX1 92 aa0.58□□□□□ -2.32
PTPN4-212ENST00000488896 A8MWV9 139 aa0.58□□□□□ -2.32
PTPN4-212ENST00000488896 ZNF736B4DX44 427 aaPredicted RBP0.58□□□□□ -2.32
PTPN4-212ENST00000488896 M0R378 163 aa0.58□□□□□ -2.32
PTPN4-212ENST00000488896 DHFRP00374 187 aa0.58□□□□□ -2.32
PTPN4-212ENST00000488896 IFNA1P01562 189 aa0.58□□□□□ -2.32
PTPN4-212ENST00000488896 APOA2P02652 100 aa0.58□□□□□ -2.32
PTPN4-212ENST00000488896 CXCL1P09341 107 aa0.58□□□□□ -2.32
PTPN4-212ENST00000488896 HLA-EP13747 358 aa0.58□□□□□ -2.32
PTPN4-212ENST00000488896 DYNLT3P51808 116 aa0.58□□□□□ -2.32
PTPN4-212ENST00000488896 ARPP19P56211 112 aa0.58□□□□□ -2.32
PTPN4-212ENST00000488896 MSMO1Q15800 293 aa0.58□□□□□ -2.32
PTPN4-212ENST00000488896 SCGB2B2Q4G0G5 96 aa0.58□□□□□ -2.32
PTPN4-212ENST00000488896 C1orf137Q5JT78 98 aa0.58□□□□□ -2.32
PTPN4-212ENST00000488896 PPP1R2P3Q6NXS1 205 aa0.58□□□□□ -2.32
PTPN4-212ENST00000488896 TMED4Q7Z7H5 227 aa0.58□□□□□ -2.32
PTPN4-212ENST00000488896 STX19Q8N4C7 294 aa0.58□□□□□ -2.32
PTPN4-212ENST00000488896 FAM24BQ8N5W8 94 aa0.58□□□□□ -2.32
PTPN4-212ENST00000488896 OR5D14Q8NGL3 314 aa0.58□□□□□ -2.32
PTPN4-212ENST00000488896 OR10K1Q8NGX5 313 aa0.58□□□□□ -2.32
PTPN4-212ENST00000488896 RAB37Q96AX2 223 aa0.58□□□□□ -2.32
PTPN4-212ENST00000488896 CHCHD1Q96BP2 118 aaKnown RBP0.58□□□□□ -2.32
PTPN4-212ENST00000488896 TMEM126AQ9H061 195 aa0.58□□□□□ -2.32
PTPN4-212ENST00000488896 POPDC3Q9HBV1 291 aa0.58□□□□□ -2.32
PTPN4-212ENST00000488896 C14orf132Q9NPU4 83 aa0.58□□□□□ -2.32
PTPN4-212ENST00000488896 TMEM14CQ9P0S9 112 aa0.58□□□□□ -2.32
PTPN4-212ENST00000488896 PRNDQ9UKY0 176 aa0.58□□□□□ -2.32
PTPN4-212ENST00000488896 DOCK4Q8N1I0 1966 aa0.57□□□□□ -2.32
PTPN4-212ENST00000488896 TAF1LQ8IZX4 1826 aa0.57□□□□□ -2.32
PTPN4-212ENST00000488896 TRAV10A0A0B4J240 114 aa0.57□□□□□ -2.32
PTPN4-212ENST00000488896 ODAMA1E959 279 aa0.57□□□□□ -2.32
PTPN4-212ENST00000488896 OR2T8A6NH00 312 aa0.57□□□□□ -2.32
PTPN4-212ENST00000488896 F8W1H4 67 aa0.57□□□□□ -2.32
PTPN4-212ENST00000488896 TMEM256-PLSCR3K7ERE1 68 aa0.57□□□□□ -2.32
PTPN4-212ENST00000488896 RER1O15258 196 aa0.57□□□□□ -2.32
PTPN4-212ENST00000488896 CCL16O15467 120 aa0.57□□□□□ -2.32
PTPN4-212ENST00000488896 OGNP20774 298 aaKnown RBP0.57□□□□□ -2.32
PTPN4-212ENST00000488896 RNASE4P34096 147 aaKnown RBP0.57□□□□□ -2.32
PTPN4-212ENST00000488896 GLRXP35754 106 aa0.57□□□□□ -2.32
PTPN4-212ENST00000488896 CDK6Q00534 326 aa0.57□□□□□ -2.32
PTPN4-212ENST00000488896 PDE6HQ13956 83 aa0.57□□□□□ -2.32
PTPN4-212ENST00000488896 DEFB115Q30KQ5 88 aa0.57□□□□□ -2.32
Retrieved 100 of 20,778 RNA–protein pairs in 36.3 ms