RNA–Protein interactions for RNA: ENST00000485943.1

USP40-216, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 4

Gene USP40, Length 568 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-216ENST00000485943 GALR1P47211 349 aa6.07□□□□□ -1.44
USP40-216ENST00000485943 APOC4P55056 127 aa6.07□□□□□ -1.44
USP40-216ENST00000485943 FGL1Q08830 312 aa6.07□□□□□ -1.44
USP40-216ENST00000485943 Q6ZRG5 221 aa6.07□□□□□ -1.44
USP40-216ENST00000485943 STHQ8IWL8 128 aa6.07□□□□□ -1.44
USP40-216ENST00000485943 Q8N3U1 123 aa6.07□□□□□ -1.44
USP40-216ENST00000485943 STPG3Q8N7X2 389 aa6.07□□□□□ -1.44
USP40-216ENST00000485943 THAP6Q8TBB0 222 aa6.07□□□□□ -1.44
USP40-216ENST00000485943 ST8SIA2Q92186 375 aa6.07□□□□□ -1.44
USP40-216ENST00000485943 RNF2Q99496 336 aa6.07□□□□□ -1.44
USP40-216ENST00000485943 LOC102724200A0A096LPH7 203 aaPredicted RBP6.06□□□□□ -1.44
USP40-216ENST00000485943 E5RGE8 158 aa6.06□□□□□ -1.44
USP40-216ENST00000485943 COX7A2P2O60397 106 aa6.06□□□□□ -1.44
USP40-216ENST00000485943 DFFBO76075 338 aa6.06□□□□□ -1.44
USP40-216ENST00000485943 CST7O76096 145 aa6.06□□□□□ -1.44
USP40-216ENST00000485943 CD7P09564 240 aa6.06□□□□□ -1.44
USP40-216ENST00000485943 EDN2P20800 178 aa6.06□□□□□ -1.44
USP40-216ENST00000485943 S100A11P31949 105 aa6.06□□□□□ -1.44
USP40-216ENST00000485943 SELENOTP62341 195 aa6.06□□□□□ -1.44
USP40-216ENST00000485943 DLK1P80370 383 aa6.06□□□□□ -1.44
USP40-216ENST00000485943 SLC38A11Q08AI6 406 aa6.06□□□□□ -1.44
USP40-216ENST00000485943 RAB32Q13637 225 aa6.06□□□□□ -1.44
USP40-216ENST00000485943 SIGLEC15Q6ZMC9 328 aa6.06□□□□□ -1.44
USP40-216ENST00000485943 IL34Q6ZMJ4 242 aa6.06□□□□□ -1.44
USP40-216ENST00000485943 TMEM144Q7Z5S9 345 aa6.06□□□□□ -1.44
USP40-216ENST00000485943 ZNF546Q86UE3 836 aa6.06□□□□□ -1.44
USP40-216ENST00000485943 DEFB125Q8N687 156 aa6.06□□□□□ -1.44
USP40-216ENST00000485943 TRGV9Q99603 122 aa6.06□□□□□ -1.44
USP40-216ENST00000485943 SPATA25Q9BR10 227 aa6.06□□□□□ -1.44
USP40-216ENST00000485943 KCNIP2Q9NS61 270 aa6.06□□□□□ -1.44
USP40-216ENST00000485943 UQCC1Q9NVA1 299 aa6.06□□□□□ -1.44
USP40-216ENST00000485943 DOK5Q9P104 306 aa6.06□□□□□ -1.44
USP40-216ENST00000485943 UBE2L5PA0A1B0GUS4 154 aa6.05□□□□□ -1.44
USP40-216ENST00000485943 C7orf66A4D0T2 115 aa6.05□□□□□ -1.44
USP40-216ENST00000485943 FAM24AA6NFZ4 105 aa6.05□□□□□ -1.44
USP40-216ENST00000485943 C17orf112F2Z3M2 114 aa6.05□□□□□ -1.44
USP40-216ENST00000485943 HYPMO75409 117 aa6.05□□□□□ -1.44
USP40-216ENST00000485943 SIX6O95475 246 aa6.05□□□□□ -1.44
USP40-216ENST00000485943 IFNA5P01569 189 aa6.05□□□□□ -1.44
USP40-216ENST00000485943 LINC00869P0C866 280 aa6.05□□□□□ -1.44
USP40-216ENST00000485943 C8orf88P0DMB2 117 aa6.05□□□□□ -1.44
USP40-216ENST00000485943 SULT1A1P50225 295 aa6.05□□□□□ -1.44
USP40-216ENST00000485943 ZNF90Q03938 601 aa6.05□□□□□ -1.44
USP40-216ENST00000485943 ATP6V1FQ16864 119 aa6.05□□□□□ -1.44
USP40-216ENST00000485943 SAMD13Q5VXD3 122 aa6.05□□□□□ -1.44
USP40-216ENST00000485943 C11orf87Q6NUJ2 197 aa6.05□□□□□ -1.44
USP40-216ENST00000485943 CYP2G1PQ6ZSU1 146 aa6.05□□□□□ -1.44
USP40-216ENST00000485943 SCGB1C1Q8TD33 95 aa6.05□□□□□ -1.44
USP40-216ENST00000485943 LINC00052Q96N35 136 aa6.05□□□□□ -1.44
USP40-216ENST00000485943 MARVELD1Q9BSK0 173 aa6.05□□□□□ -1.44
USP40-216ENST00000485943 GGACTQ9BVM4 153 aa6.05□□□□□ -1.44
USP40-216ENST00000485943 GGTLC1Q9BX51 225 aa6.05□□□□□ -1.44
USP40-216ENST00000485943 NMES1Q9C002 83 aa6.05□□□□□ -1.44
USP40-216ENST00000485943 PPP1R14DQ9NXH3 145 aa6.05□□□□□ -1.44
USP40-216ENST00000485943 HIGD1AQ9Y241 93 aa6.05□□□□□ -1.44
USP40-216ENST00000485943 U3KQK5 164 aa6.05□□□□□ -1.44
USP40-216ENST00000485943 IGKV1-17P01599 117 aa6.04□□□□□ -1.44
USP40-216ENST00000485943 PLA2G1BP04054 148 aaKnown RBP6.04□□□□□ -1.44
USP40-216ENST00000485943 RPL35AP18077 110 aaKnown RBP6.04□□□□□ -1.44
USP40-216ENST00000485943 FGF7P21781 194 aa6.04□□□□□ -1.44
USP40-216ENST00000485943 CRYBB3P26998 211 aa6.04□□□□□ -1.44
USP40-216ENST00000485943 MEOX2P50222 304 aa6.04□□□□□ -1.44
USP40-216ENST00000485943 NUTF2P61970 127 aaKnown RBP6.04□□□□□ -1.44
USP40-216ENST00000485943 IFITM3Q01628 133 aa6.04□□□□□ -1.44
USP40-216ENST00000485943 OR1L4Q8NGR5 311 aa6.04□□□□□ -1.44
USP40-216ENST00000485943 GPR82Q96P67 336 aa6.04□□□□□ -1.44
USP40-216ENST00000485943 ARL6Q9H0F7 186 aa6.04□□□□□ -1.44
USP40-216ENST00000485943 MS4A6AQ9H2W1 248 aa6.04□□□□□ -1.44
USP40-216ENST00000485943 LYRM2Q9NU23 88 aaPredicted RBP6.04□□□□□ -1.44
USP40-216ENST00000485943 MRPL36Q9P0J6 103 aaKnown RBP6.04□□□□□ -1.44
USP40-216ENST00000485943 LSM4Q9Y4Z0 139 aaKnown RBP6.04□□□□□ -1.44
USP40-216ENST00000485943 ALG5Q9Y673 324 aa6.04□□□□□ -1.44
USP40-216ENST00000485943 FNDC10F2Z333 226 aa6.03□□□□□ -1.44
USP40-216ENST00000485943 DEDDO75618 318 aa6.03□□□□□ -1.44
USP40-216ENST00000485943 APOHP02749 345 aaPredicted RBP6.03□□□□□ -1.44
USP40-216ENST00000485943 ZNF688P0C7X2 276 aa6.03□□□□□ -1.44
USP40-216ENST00000485943 RPL7P18124 248 aaKnown RBP6.03□□□□□ -1.44
USP40-216ENST00000485943 CAMLGP49069 296 aa6.03□□□□□ -1.44
USP40-216ENST00000485943 DEFB131AP59861 70 aa6.03□□□□□ -1.44
USP40-216ENST00000485943 CLINT1Q14677 625 aa6.03□□□□□ -1.44
USP40-216ENST00000485943 USF2Q15853 346 aaPredicted RBP6.03□□□□□ -1.44
USP40-216ENST00000485943 PSMG4Q5JS54 123 aa6.03□□□□□ -1.44
USP40-216ENST00000485943 PXDC1Q5TGL8 231 aa6.03□□□□□ -1.44
USP40-216ENST00000485943 EBLN2Q6P2I7 272 aa6.03□□□□□ -1.44
USP40-216ENST00000485943 TMEM14EPQ6UXP3 125 aa6.03□□□□□ -1.44
USP40-216ENST00000485943 TMEM252Q8N6L7 170 aa6.03□□□□□ -1.44
USP40-216ENST00000485943 THAP8Q8NA92 274 aa6.03□□□□□ -1.44
USP40-216ENST00000485943 INO80EQ8NBZ0 244 aaPredicted RBP6.03□□□□□ -1.44
USP40-216ENST00000485943 TMEM170AQ8WVE7 144 aa6.03□□□□□ -1.44
USP40-216ENST00000485943 PPP1R1CQ8WVI7 109 aa6.03□□□□□ -1.44
USP40-216ENST00000485943 RCHY1Q96PM5 261 aa6.03□□□□□ -1.44
USP40-216ENST00000485943 PFDN5Q99471 154 aa6.03□□□□□ -1.44
USP40-216ENST00000485943 VSIRQ9H7M9 311 aa6.03□□□□□ -1.44
USP40-216ENST00000485943 NRN1Q9NPD7 142 aa6.03□□□□□ -1.44
USP40-216ENST00000485943 TRAV2A0A0B4J234 112 aa6.02□□□□□ -1.45
USP40-216ENST00000485943 AGPAT2O15120 278 aa6.02□□□□□ -1.45
USP40-216ENST00000485943 MPDU1O75352 247 aa6.02□□□□□ -1.45
USP40-216ENST00000485943 GATA2P23769 480 aaPredicted RBP6.02□□□□□ -1.45
USP40-216ENST00000485943 C1orf194Q5T5A4 169 aa6.02□□□□□ -1.45
USP40-216ENST00000485943 C10orf113Q5VZT2 155 aa6.02□□□□□ -1.45
Retrieved 100 of 20,778 RNA–protein pairs in 43.1 ms