RNA–Protein interactions for RNA: ENST00000485140.1

VPS50-217, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 4

Gene VPS50, Length 558 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-217ENST00000485140 OR5D14Q8NGL3 314 aa0.09□□□□□ -2.4
VPS50-217ENST00000485140 SLC25A40Q8TBP6 338 aa0.09□□□□□ -2.4
VPS50-217ENST00000485140 DDI1Q8WTU0 396 aa0.09□□□□□ -2.4
VPS50-217ENST00000485140 ADAT3Q96EY9 351 aaPredicted RBP0.09□□□□□ -2.4
VPS50-217ENST00000485140 LYSMD1Q96S90 227 aa0.09□□□□□ -2.4
VPS50-217ENST00000485140 IDI2-AS1Q9NZ38 188 aa0.09□□□□□ -2.4
VPS50-217ENST00000485140 CHD3Q12873 2000 aaKnown RBP0.09□□□□□ -2.4
VPS50-217ENST00000485140 RIMBP3CA6NJZ7 1639 aa0.09□□□□□ -2.4
VPS50-217ENST00000485140 RIMBP3BA6NNM3 1639 aa0.09□□□□□ -2.4
VPS50-217ENST00000485140 RIMBP3Q9UFD9 1639 aa0.09□□□□□ -2.4
VPS50-217ENST00000485140 CITO14578 2027 aa0.08□□□□□ -2.4
VPS50-217ENST00000485140 TRAV10A0A0B4J240 114 aa0.08□□□□□ -2.4
VPS50-217ENST00000485140 K7EIL1 84 aa0.08□□□□□ -2.4
VPS50-217ENST00000485140 ERC2-IT1O76042 136 aa0.08□□□□□ -2.4
VPS50-217ENST00000485140 CD2P06729 351 aa0.08□□□□□ -2.4
VPS50-217ENST00000485140 COX7CP15954 63 aa0.08□□□□□ -2.4
VPS50-217ENST00000485140 ZNF137PP52743 207 aa0.08□□□□□ -2.4
VPS50-217ENST00000485140 CEBPGP53567 150 aa0.08□□□□□ -2.4
VPS50-217ENST00000485140 KRR1Q13601 381 aaKnown RBP0.08□□□□□ -2.4
VPS50-217ENST00000485140 IMPG1Q17R60 797 aa0.08□□□□□ -2.4
VPS50-217ENST00000485140 ZNF833PQ6ZTB9 187 aa0.08□□□□□ -2.4
VPS50-217ENST00000485140 GRINAQ7Z429 371 aa0.08□□□□□ -2.4
VPS50-217ENST00000485140 TRAPPC5Q8IUR0 188 aa0.08□□□□□ -2.4
VPS50-217ENST00000485140 Q8IYB0 196 aa0.08□□□□□ -2.4
VPS50-217ENST00000485140 ATOH7Q8N100 152 aa0.08□□□□□ -2.4
VPS50-217ENST00000485140 C12orf45Q8N5I9 185 aaPredicted RBP0.08□□□□□ -2.4
VPS50-217ENST00000485140 PCTPQ9UKL6 214 aa0.08□□□□□ -2.4
VPS50-217ENST00000485140 RNF11Q9Y3C5 154 aa0.08□□□□□ -2.4
VPS50-217ENST00000485140 HECW1Q76N89 1606 aa0.08□□□□□ -2.4
VPS50-217ENST00000485140 HECW2Q9P2P5 1572 aa0.07□□□□□ -2.4
VPS50-217ENST00000485140 SSPOA2VEC9 5147 aa0.07□□□□□ -2.4
VPS50-217ENST00000485140 SMIM9A6NGZ8 99 aa0.07□□□□□ -2.4
VPS50-217ENST00000485140 E7EUB6 86 aa0.07□□□□□ -2.4
VPS50-217ENST00000485140 NDUFB3O43676 98 aa0.07□□□□□ -2.4
VPS50-217ENST00000485140 PDE6DO43924 150 aa0.07□□□□□ -2.4
VPS50-217ENST00000485140 FOXA3P55318 350 aaPredicted RBP0.07□□□□□ -2.4
VPS50-217ENST00000485140 DSCR4P56555 118 aaPredicted RBP0.07□□□□□ -2.4
VPS50-217ENST00000485140 HIST1H3AP68431 136 aa0.07□□□□□ -2.4
VPS50-217ENST00000485140 H3F3AP84243 136 aa0.07□□□□□ -2.4
VPS50-217ENST00000485140 EDDM3AQ14507 147 aa0.07□□□□□ -2.4
VPS50-217ENST00000485140 SPATA45Q537H7 98 aa0.07□□□□□ -2.4
VPS50-217ENST00000485140 C6orf52Q5T4I8 152 aa0.07□□□□□ -2.4
VPS50-217ENST00000485140 BCL2L15Q5TBC7 163 aa0.07□□□□□ -2.4
VPS50-217ENST00000485140 C22orf39Q6P5X5 142 aa0.07□□□□□ -2.4
VPS50-217ENST00000485140 CCDC42Q96M95 316 aa0.07□□□□□ -2.4
VPS50-217ENST00000485140 SLC25A21Q9BQT8 299 aaPredicted RBP0.07□□□□□ -2.4
VPS50-217ENST00000485140 TMEM133Q9H2Q1 129 aa0.07□□□□□ -2.4
VPS50-217ENST00000485140 GLTPQ9NZD2 209 aa0.07□□□□□ -2.4
VPS50-217ENST00000485140 HSPB8Q9UJY1 196 aa0.07□□□□□ -2.4
VPS50-217ENST00000485140 TNCP24821 2201 aa0.07□□□□□ -2.4
VPS50-217ENST00000485140 NCOA1Q15788 1441 aa0.06□□□□□ -2.4
VPS50-217ENST00000485140 CECR2Q9BXF3 1484 aa0.06□□□□□ -2.4
VPS50-217ENST00000485140 C17orf112F2Z3M2 114 aa0.06□□□□□ -2.4
VPS50-217ENST00000485140 KPNA3O00505 521 aaPredicted RBP0.06□□□□□ -2.4
VPS50-217ENST00000485140 RPP14O95059 124 aaKnown RBP0.06□□□□□ -2.4
VPS50-217ENST00000485140 CXCL8P10145 99 aa0.06□□□□□ -2.4
VPS50-217ENST00000485140 PDZD9Q8IXQ8 264 aa0.06□□□□□ -2.4
VPS50-217ENST00000485140 OR10K1Q8NGX5 313 aa0.06□□□□□ -2.4
VPS50-217ENST00000485140 PBOV1Q9GZY1 135 aa0.06□□□□□ -2.4
VPS50-217ENST00000485140 UQCC1Q9NVA1 299 aa0.06□□□□□ -2.4
VPS50-217ENST00000485140 ARHGEF28Q8N1W1 1705 aaKnown RBP0.06□□□□□ -2.4
VPS50-217ENST00000485140 MUC4Q99102 2169 aa0.06□□□□□ -2.4
VPS50-217ENST00000485140 UNC13CQ8NB66 2214 aa0.06□□□□□ -2.4
VPS50-217ENST00000485140 OBSL1O75147 1896 aa0.05□□□□□ -2.4
VPS50-217ENST00000485140 FMN1Q68DA7 1419 aa0.05□□□□□ -2.4
VPS50-217ENST00000485140 ZDBF2Q9HCK1 2354 aa0.05□□□□□ -2.4
VPS50-217ENST00000485140 BDP1A6H8Y1 2624 aa0.05□□□□□ -2.4
VPS50-217ENST00000485140 MYH7BA7E2Y1 1941 aa0.05□□□□□ -2.4
VPS50-217ENST00000485140 A0A087WUJ7 227 aa0.05□□□□□ -2.4
VPS50-217ENST00000485140 TRBV30A0A0K0K1B3 111 aa0.05□□□□□ -2.4
VPS50-217ENST00000485140 KRTAP2-3P0C7H8 128 aa0.05□□□□□ -2.4
VPS50-217ENST00000485140 RNASE4P34096 147 aaKnown RBP0.05□□□□□ -2.4
VPS50-217ENST00000485140 SPINT3P49223 89 aa0.05□□□□□ -2.4
VPS50-217ENST00000485140 RANP62826 216 aaKnown RBP0.05□□□□□ -2.4
VPS50-217ENST00000485140 CDK6Q00534 326 aa0.05□□□□□ -2.4
VPS50-217ENST00000485140 SPINK6Q6UWN8 80 aa0.05□□□□□ -2.4
VPS50-217ENST00000485140 OR51A2Q8NGJ7 313 aa0.05□□□□□ -2.4
VPS50-217ENST00000485140 OR10AG1Q8NH19 301 aa0.05□□□□□ -2.4
VPS50-217ENST00000485140 MUCL1Q96DR8 90 aa0.05□□□□□ -2.4
VPS50-217ENST00000485140 KRTAP2-4Q9BYR9 128 aa0.05□□□□□ -2.4
VPS50-217ENST00000485140 KRTAP2-1Q9BYU5 128 aa0.05□□□□□ -2.4
VPS50-217ENST00000485140 TMEM126AQ9H061 195 aa0.05□□□□□ -2.4
VPS50-217ENST00000485140 WFDC10AQ9H1F0 79 aa0.05□□□□□ -2.4
VPS50-217ENST00000485140 TCEAL2Q9H3H9 227 aaPredicted RBP0.05□□□□□ -2.4
VPS50-217ENST00000485140 CTNNBIP1Q9NSA3 81 aaPredicted RBP0.05□□□□□ -2.4
VPS50-217ENST00000485140 OR52A1Q9UKL2 312 aa0.05□□□□□ -2.4
VPS50-217ENST00000485140 SIP14410 1827 aa0.04□□□□□ -2.4
VPS50-217ENST00000485140 ARHGEF11O15085 1522 aa0.04□□□□□ -2.4
VPS50-217ENST00000485140 JMJD7-PLA2G4BH0Y9G9 81 aa0.04□□□□□ -2.4
VPS50-217ENST00000485140 GGCTO75223 188 aaKnown RBP0.04□□□□□ -2.4
VPS50-217ENST00000485140 OR10J4P0C629 311 aa0.04□□□□□ -2.4
VPS50-217ENST00000485140 ERP29P30040 261 aaKnown RBP0.04□□□□□ -2.4
VPS50-217ENST00000485140 PIGPP57054 158 aa0.04□□□□□ -2.4
VPS50-217ENST00000485140 ROMO1P60602 79 aa0.04□□□□□ -2.4
VPS50-217ENST00000485140 RRN3P1Q2M238 152 aa0.04□□□□□ -2.4
VPS50-217ENST00000485140 TMEM97Q5BJF2 176 aa0.04□□□□□ -2.4
VPS50-217ENST00000485140 PTRHD1Q6GMV3 140 aaKnown RBP0.04□□□□□ -2.4
VPS50-217ENST00000485140 GNPDA2Q8TDQ7 276 aa0.04□□□□□ -2.4
VPS50-217ENST00000485140 BTF3L4Q96K17 158 aa0.04□□□□□ -2.4
VPS50-217ENST00000485140 IMUPQ9GZP8 106 aa0.04□□□□□ -2.4
Retrieved 100 of 20,778 RNA–protein pairs in 33.8 ms