RNA–Protein interactions for RNA: ENST00000481800.1

COL9A3-212, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 4

Gene COL9A3, Length 548 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-212ENST00000481800 SLC45A2Q9UMX9 530 aa12.85□□□□□ -0.35
COL9A3-212ENST00000481800 H3BMM0 161 aa12.84□□□□□ -0.35
COL9A3-212ENST00000481800 GALR1P47211 349 aa12.84□□□□□ -0.35
COL9A3-212ENST00000481800 PSMB3P49720 205 aa12.84□□□□□ -0.35
COL9A3-212ENST00000481800 NANOS2P60321 138 aaKnown RBP12.84□□□□□ -0.35
COL9A3-212ENST00000481800 TMEM144Q7Z5S9 345 aa12.84□□□□□ -0.35
COL9A3-212ENST00000481800 ZBTB8BQ8NAP8 495 aaPredicted RBP12.84□□□□□ -0.35
COL9A3-212ENST00000481800 TMEM147Q9BVK8 224 aa12.84□□□□□ -0.35
COL9A3-212ENST00000481800 WDR12Q9GZL7 423 aaKnown RBP12.84□□□□□ -0.35
COL9A3-212ENST00000481800 SLC25A22Q9H936 323 aa12.84□□□□□ -0.35
COL9A3-212ENST00000481800 LY6G6CO95867 125 aa12.83□□□□□ -0.36
COL9A3-212ENST00000481800 TCRBP04435 133 aa12.83□□□□□ -0.36
COL9A3-212ENST00000481800 IL5P05113 134 aa12.83□□□□□ -0.36
COL9A3-212ENST00000481800 HLA-DRB4P13762 266 aa12.83□□□□□ -0.36
COL9A3-212ENST00000481800 MIFP14174 115 aa12.83□□□□□ -0.36
COL9A3-212ENST00000481800 GATA2P23769 480 aaPredicted RBP12.83□□□□□ -0.36
COL9A3-212ENST00000481800 ZNF846Q147U1 533 aa12.83□□□□□ -0.36
COL9A3-212ENST00000481800 SAMD13Q5VXD3 122 aa12.83□□□□□ -0.36
COL9A3-212ENST00000481800 OR10P1Q8NGE3 313 aa12.83□□□□□ -0.36
COL9A3-212ENST00000481800 OR1B1Q8NGR6 318 aa12.83□□□□□ -0.36
COL9A3-212ENST00000481800 CCDC32Q9BV29 185 aa12.83□□□□□ -0.36
COL9A3-212ENST00000481800 TBC1D24Q9ULP9 559 aa12.83□□□□□ -0.36
COL9A3-212ENST00000481800 HLA-DRB4X5D2U9 266 aa12.83□□□□□ -0.36
COL9A3-212ENST00000481800 TRAV6A0A075B6T7 132 aa12.82□□□□□ -0.36
COL9A3-212ENST00000481800 IGHV4-28A0A0C4DH34 117 aa12.82□□□□□ -0.36
COL9A3-212ENST00000481800 ZNF98A6NK75 572 aa12.82□□□□□ -0.36
COL9A3-212ENST00000481800 METTL15P1P0C7V9 234 aa12.82□□□□□ -0.36
COL9A3-212ENST00000481800 MEOX2P50222 304 aa12.82□□□□□ -0.36
COL9A3-212ENST00000481800 TAS2R30P59541 319 aa12.82□□□□□ -0.36
COL9A3-212ENST00000481800 RRAS2P62070 204 aaPredicted RBP12.82□□□□□ -0.36
COL9A3-212ENST00000481800 CYP2G1PQ6ZSU1 146 aa12.82□□□□□ -0.36
COL9A3-212ENST00000481800 Q8NAQ8 132 aa12.82□□□□□ -0.36
COL9A3-212ENST00000481800 LINC00476Q8WZB0 136 aa12.82□□□□□ -0.36
COL9A3-212ENST00000481800 XCL2Q9UBD3 114 aa12.82□□□□□ -0.36
COL9A3-212ENST00000481800 ZNF705EA8MWA4 302 aaPredicted RBP12.81□□□□□ -0.36
COL9A3-212ENST00000481800 FAM25EA8MYX2 175 aa12.81□□□□□ -0.36
COL9A3-212ENST00000481800 ISLRO14498 428 aa12.81□□□□□ -0.36
COL9A3-212ENST00000481800 TSC22D2O75157 780 aa12.81□□□□□ -0.36
COL9A3-212ENST00000481800 IGKV3-20P01619 116 aa12.81□□□□□ -0.36
COL9A3-212ENST00000481800 PAX9P55771 341 aa12.81□□□□□ -0.36
COL9A3-212ENST00000481800 DLK1P80370 383 aa12.81□□□□□ -0.36
COL9A3-212ENST00000481800 TMEM14EPQ6UXP3 125 aa12.81□□□□□ -0.36
COL9A3-212ENST00000481800 TMEM182Q6ZP80 229 aaPredicted RBP12.81□□□□□ -0.36
COL9A3-212ENST00000481800 FOXI2Q6ZQN5 318 aa12.81□□□□□ -0.36
COL9A3-212ENST00000481800 C16orf92Q96LL3 132 aa12.81□□□□□ -0.36
COL9A3-212ENST00000481800 RSG1Q9BU20 258 aa12.81□□□□□ -0.36
COL9A3-212ENST00000481800 SLC25A32Q9H2D1 315 aa12.81□□□□□ -0.36
COL9A3-212ENST00000481800 NUDT15Q9NV35 164 aa12.81□□□□□ -0.36
COL9A3-212ENST00000481800 MGAT4CQ9UBM8 478 aa12.81□□□□□ -0.36
COL9A3-212ENST00000481800 PMS2P5A8MQ11 134 aa12.8□□□□□ -0.36
COL9A3-212ENST00000481800 L7N2F9 121 aa12.8□□□□□ -0.36
COL9A3-212ENST00000481800 SOCS3O14543 225 aa12.8□□□□□ -0.36
COL9A3-212ENST00000481800 CCSO14618 274 aa12.8□□□□□ -0.36
COL9A3-212ENST00000481800 RAP2BP61225 183 aa12.8□□□□□ -0.36
COL9A3-212ENST00000481800 SELENOTP62341 195 aa12.8□□□□□ -0.36
COL9A3-212ENST00000481800 VAMP2P63027 116 aa12.8□□□□□ -0.36
COL9A3-212ENST00000481800 EBLN2Q6P2I7 272 aa12.8□□□□□ -0.36
COL9A3-212ENST00000481800 S100A7AQ86SG5 101 aa12.8□□□□□ -0.36
COL9A3-212ENST00000481800 CSNK1G2-AS1Q8NCQ2 148 aa12.8□□□□□ -0.36
COL9A3-212ENST00000481800 OR4B1Q8NGF8 309 aa12.8□□□□□ -0.36
COL9A3-212ENST00000481800 ZNF431Q8TF32 576 aaPredicted RBP12.8□□□□□ -0.36
COL9A3-212ENST00000481800 GPR82Q96P67 336 aa12.8□□□□□ -0.36
COL9A3-212ENST00000481800 SAV1Q9H4B6 383 aaPredicted RBP12.8□□□□□ -0.36
COL9A3-212ENST00000481800 NPVFQ9HCQ7 196 aa12.8□□□□□ -0.36
COL9A3-212ENST00000481800 DOK5Q9P104 306 aa12.8□□□□□ -0.36
COL9A3-212ENST00000481800 X6R8D5 127 aa12.8□□□□□ -0.36
COL9A3-212ENST00000481800 FAM240BA0A1B0GVZ2 78 aa12.79□□□□□ -0.36
COL9A3-212ENST00000481800 C5orf51A6NDU8 294 aa12.79□□□□□ -0.36
COL9A3-212ENST00000481800 HYPMO75409 117 aa12.79□□□□□ -0.36
COL9A3-212ENST00000481800 CCNKO75909 580 aa12.79□□□□□ -0.36
COL9A3-212ENST00000481800 MBPP02686 304 aaPredicted RBP12.79□□□□□ -0.36
COL9A3-212ENST00000481800 H2AFB2P0C5Z0 115 aa12.79□□□□□ -0.36
COL9A3-212ENST00000481800 RBMY1A1P0DJD3 496 aaKnown RBP12.79□□□□□ -0.36
COL9A3-212ENST00000481800 RBMY1CP0DJD4 496 aa12.79□□□□□ -0.36
COL9A3-212ENST00000481800 DEFB1P60022 68 aa12.79□□□□□ -0.36
COL9A3-212ENST00000481800 RBMY1FQ15415 496 aaKnown RBP12.79□□□□□ -0.36
COL9A3-212ENST00000481800 GDF5OSQ5U4N7 250 aa12.79□□□□□ -0.36
COL9A3-212ENST00000481800 SPATA31B1PQ5VZV4 182 aa12.79□□□□□ -0.36
COL9A3-212ENST00000481800 MZT2BQ6NZ67 158 aa12.79□□□□□ -0.36
COL9A3-212ENST00000481800 GSG1LQ6UXU4 331 aa12.79□□□□□ -0.36
COL9A3-212ENST00000481800 LINC00299Q6ZSB3 139 aa12.79□□□□□ -0.36
COL9A3-212ENST00000481800 S100ZQ8WXG8 99 aa12.79□□□□□ -0.36
COL9A3-212ENST00000481800 SEC22CQ9BRL7 303 aa12.79□□□□□ -0.36
COL9A3-212ENST00000481800 RPRMQ9NS64 109 aa12.79□□□□□ -0.36
COL9A3-212ENST00000481800 HIGD1AQ9Y241 93 aa12.79□□□□□ -0.36
COL9A3-212ENST00000481800 RCL1Q9Y2P8 373 aaKnown RBP12.79□□□□□ -0.36
COL9A3-212ENST00000481800 FNDC10F2Z333 226 aa12.78□□□□□ -0.36
COL9A3-212ENST00000481800 LINC00869P0C866 280 aa12.78□□□□□ -0.36
COL9A3-212ENST00000481800 TEPPQ6URK8 271 aa12.78□□□□□ -0.36
COL9A3-212ENST00000481800 C12orf45Q8N5I9 185 aaPredicted RBP12.78□□□□□ -0.36
COL9A3-212ENST00000481800 HRH4Q9H3N8 390 aa12.78□□□□□ -0.36
COL9A3-212ENST00000481800 C7orf66A4D0T2 115 aa12.77□□□□□ -0.37
COL9A3-212ENST00000481800 OR5G3P0C626 314 aa12.77□□□□□ -0.37
COL9A3-212ENST00000481800 BCAP31P51572 246 aa12.77□□□□□ -0.37
COL9A3-212ENST00000481800 FXYD7P58549 80 aa12.77□□□□□ -0.37
COL9A3-212ENST00000481800 C2CD4CQ8TF44 421 aa12.77□□□□□ -0.37
COL9A3-212ENST00000481800 SCRT1Q9BWW7 348 aa12.77□□□□□ -0.37
COL9A3-212ENST00000481800 SLC25A39Q9BZJ4 359 aaPredicted RBP12.77□□□□□ -0.37
COL9A3-212ENST00000481800 LSM5Q9Y4Y9 91 aaKnown RBP12.77□□□□□ -0.37
COL9A3-212ENST00000481800 C11orf94C9JXX5 98 aa12.76□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 45.3 ms