RNA–Protein interactions for RNA: ENST00000477537.1

HLA-DMB-260, Transcript of major histocompatibility complex, class II, DM beta, humanhuman

Gene HLA-DMB, Length 1,919 nt, Biotype retained intron.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMB-260ENST00000477537 RPH3ALQ9UNE2 315 aa8.71□□□□□ -1.02
HLA-DMB-260ENST00000477537 ZNF705GA8MUZ8 300 aaPredicted RBP8.7□□□□□ -1.02
HLA-DMB-260ENST00000477537 IER3P46695 156 aa8.7□□□□□ -1.02
HLA-DMB-260ENST00000477537 TCL1AP56279 114 aa8.7□□□□□ -1.02
HLA-DMB-260ENST00000477537 LMO4P61968 165 aa8.7□□□□□ -1.02
HLA-DMB-260ENST00000477537 NDPQ00604 133 aa8.7□□□□□ -1.02
HLA-DMB-260ENST00000477537 EBI3Q14213 229 aa8.7□□□□□ -1.02
HLA-DMB-260ENST00000477537 TMEM183BQ1AE95 376 aa8.7□□□□□ -1.02
HLA-DMB-260ENST00000477537 ASPHD1Q5U4P2 390 aa8.7□□□□□ -1.02
HLA-DMB-260ENST00000477537 ZNF562Q6V9R5 426 aa8.7□□□□□ -1.02
HLA-DMB-260ENST00000477537 TBX15Q96SF7 602 aa8.7□□□□□ -1.02
HLA-DMB-260ENST00000477537 S4R3C0 116 aa8.7□□□□□ -1.02
HLA-DMB-260ENST00000477537 NPIPB5A8MRT5 1133 aa8.7□□□□□ -1.02
HLA-DMB-260ENST00000477537 FRMD6-AS1P0C7T7 363 aa8.7□□□□□ -1.02
HLA-DMB-260ENST00000477537 UBE2G1P62253 170 aa8.7□□□□□ -1.02
HLA-DMB-260ENST00000477537 ZNF600Q6ZNG1 722 aa8.7□□□□□ -1.02
HLA-DMB-260ENST00000477537 MRPL18Q9H0U6 180 aaKnown RBP8.7□□□□□ -1.02
HLA-DMB-260ENST00000477537 Q9H3A6 140 aa8.7□□□□□ -1.02
HLA-DMB-260ENST00000477537 MRPL27Q9P0M9 148 aaKnown RBP8.7□□□□□ -1.02
HLA-DMB-260ENST00000477537 TBL2Q9Y4P3 447 aaKnown RBP8.7□□□□□ -1.02
HLA-DMB-260ENST00000477537 OVOL3O00110 214 aa8.69□□□□□ -1.02
HLA-DMB-260ENST00000477537 SPINK4O60575 86 aa8.69□□□□□ -1.02
HLA-DMB-260ENST00000477537 UBE2E1P51965 193 aa8.69□□□□□ -1.02
HLA-DMB-260ENST00000477537 FAM120AOSQ5T036 256 aa8.69□□□□□ -1.02
HLA-DMB-260ENST00000477537 TTC9CQ8N5M4 171 aa8.69□□□□□ -1.02
HLA-DMB-260ENST00000477537 SGK494Q96LW2 274 aa8.69□□□□□ -1.02
HLA-DMB-260ENST00000477537 FANCD2OSQ96PS1 177 aa8.69□□□□□ -1.02
HLA-DMB-260ENST00000477537 TMEM14CQ9P0S9 112 aa8.69□□□□□ -1.02
HLA-DMB-260ENST00000477537 ZMAT5Q9UDW3 170 aaKnown RBP8.69□□□□□ -1.02
HLA-DMB-260ENST00000477537 IGLV11-55A0A075B6I3 123 aa8.68□□□□□ -1.02
HLA-DMB-260ENST00000477537 A0A1B0GUS0 222 aa8.68□□□□□ -1.02
HLA-DMB-260ENST00000477537 SMIM27A0A1W2PRY6 76 aa8.68□□□□□ -1.02
HLA-DMB-260ENST00000477537 SNURFLB1AK76 121 aa8.68□□□□□ -1.02
HLA-DMB-260ENST00000477537 TOMM40O96008 361 aa8.68□□□□□ -1.02
HLA-DMB-260ENST00000477537 CA1P00915 261 aaPredicted RBP8.68□□□□□ -1.02
HLA-DMB-260ENST00000477537 HIST1H1EP10412 219 aaKnown RBP8.68□□□□□ -1.02
HLA-DMB-260ENST00000477537 SLC35B1P78383 322 aa8.68□□□□□ -1.02
HLA-DMB-260ENST00000477537 RPL19P84098 196 aaKnown RBP8.68□□□□□ -1.02
HLA-DMB-260ENST00000477537 C5orf17Q8NAS9 161 aa8.68□□□□□ -1.02
HLA-DMB-260ENST00000477537 ATG101Q9BSB4 218 aa8.68□□□□□ -1.02
HLA-DMB-260ENST00000477537 SHANK2-AS3Q9BTD1 123 aa8.68□□□□□ -1.02
HLA-DMB-260ENST00000477537 LPAR2Q9HBW0 351 aa8.68□□□□□ -1.02
HLA-DMB-260ENST00000477537 ZNF586Q9NXT0 402 aa8.68□□□□□ -1.02
HLA-DMB-260ENST00000477537 PTPN13Q12923 2485 aa8.68□□□□□ -1.02
HLA-DMB-260ENST00000477537 TRBV9A0A0B4J1U6 114 aa8.68□□□□□ -1.02
HLA-DMB-260ENST00000477537 A1L4Q6 167 aa8.68□□□□□ -1.02
HLA-DMB-260ENST00000477537 LINC00587B1AMM8 73 aa8.68□□□□□ -1.02
HLA-DMB-260ENST00000477537 GATCO43716 136 aaKnown RBP8.68□□□□□ -1.02
HLA-DMB-260ENST00000477537 GNG7O60262 68 aa8.68□□□□□ -1.02
HLA-DMB-260ENST00000477537 IGHV4-39P01824 125 aa8.68□□□□□ -1.02
HLA-DMB-260ENST00000477537 FAM106CPP0CH98 169 aa8.68□□□□□ -1.02
HLA-DMB-260ENST00000477537 MFAP4P55083 255 aa8.68□□□□□ -1.02
HLA-DMB-260ENST00000477537 PRR27Q6MZM9 219 aa8.68□□□□□ -1.02
HLA-DMB-260ENST00000477537 FAM231DQ6ZW35 169 aa8.68□□□□□ -1.02
HLA-DMB-260ENST00000477537 FAM168AQ92567 244 aa8.68□□□□□ -1.02
HLA-DMB-260ENST00000477537 RNF125Q96EQ8 232 aa8.68□□□□□ -1.02
HLA-DMB-260ENST00000477537 AJUBAQ96IF1 538 aa8.68□□□□□ -1.02
HLA-DMB-260ENST00000477537 OTORQ9NRC9 128 aa8.68□□□□□ -1.02
HLA-DMB-260ENST00000477537 KLF12Q9Y4X4 402 aa8.68□□□□□ -1.02
HLA-DMB-260ENST00000477537 TRAV30A0A087WSZ9 112 aa8.67□□□□□ -1.02
HLA-DMB-260ENST00000477537 IGHV7-81A0A0B4J1V7 117 aa8.67□□□□□ -1.02
HLA-DMB-260ENST00000477537 GRIFINA4D1Z8 144 aa8.67□□□□□ -1.02
HLA-DMB-260ENST00000477537 H3BRN7 92 aa8.67□□□□□ -1.02
HLA-DMB-260ENST00000477537 J3QKU1 62 aa8.67□□□□□ -1.02
HLA-DMB-260ENST00000477537 TCRAP04437 139 aa8.67□□□□□ -1.02
HLA-DMB-260ENST00000477537 IL4P05112 153 aa8.67□□□□□ -1.02
HLA-DMB-260ENST00000477537 Q56UQ5 140 aa8.67□□□□□ -1.02
HLA-DMB-260ENST00000477537 MRPL54Q6P161 138 aaKnown RBP8.67□□□□□ -1.02
HLA-DMB-260ENST00000477537 TMEM256Q8N2U0 113 aa8.67□□□□□ -1.02
HLA-DMB-260ENST00000477537 GBGT1Q8N5D6 347 aa8.67□□□□□ -1.02
HLA-DMB-260ENST00000477537 ZNF491Q8N8L2 437 aa8.67□□□□□ -1.02
HLA-DMB-260ENST00000477537 Q8N9W7 124 aa8.67□□□□□ -1.02
HLA-DMB-260ENST00000477537 NUDT10Q8NFP7 164 aa8.67□□□□□ -1.02
HLA-DMB-260ENST00000477537 TMEM18Q96B42 140 aa8.67□□□□□ -1.02
HLA-DMB-260ENST00000477537 NUDT11Q96G61 164 aa8.67□□□□□ -1.02
HLA-DMB-260ENST00000477537 GRAMD2BQ96HH9 432 aa8.67□□□□□ -1.02
HLA-DMB-260ENST00000477537 TMEM68Q96MH6 324 aa8.67□□□□□ -1.02
HLA-DMB-260ENST00000477537 GNB1LQ9BYB4 327 aa8.67□□□□□ -1.02
HLA-DMB-260ENST00000477537 C1RLQ9NZP8 487 aa8.67□□□□□ -1.02
HLA-DMB-260ENST00000477537 WI2-2373I1.2A0A1W2PRP0 233 aa8.66□□□□□ -1.02
HLA-DMB-260ENST00000477537 IZUMO1RA6ND01 250 aa8.66□□□□□ -1.02
HLA-DMB-260ENST00000477537 NDUFB8O95169 186 aa8.66□□□□□ -1.02
HLA-DMB-260ENST00000477537 IGHV3-23P01764 117 aa8.66□□□□□ -1.02
HLA-DMB-260ENST00000477537 EGR2P11161 476 aaPredicted RBP8.66□□□□□ -1.02
HLA-DMB-260ENST00000477537 SAA4P35542 130 aa8.66□□□□□ -1.02
HLA-DMB-260ENST00000477537 WDR73Q6P4I2 378 aa8.66□□□□□ -1.02
HLA-DMB-260ENST00000477537 EXOC3-AS1Q8N2X6 119 aa8.66□□□□□ -1.02
HLA-DMB-260ENST00000477537 MBD6Q96DN6 1003 aa8.66□□□□□ -1.02
HLA-DMB-260ENST00000477537 FMC1Q96HJ9 113 aa8.66□□□□□ -1.02
HLA-DMB-260ENST00000477537 GPR82Q96P67 336 aa8.66□□□□□ -1.02
HLA-DMB-260ENST00000477537 C7orf69Q9H7B7 122 aa8.66□□□□□ -1.02
HLA-DMB-260ENST00000477537 NAT8BQ9UHF3 227 aa8.66□□□□□ -1.02
HLA-DMB-260ENST00000477537 F8W735 103 aaPredicted RBP8.66□□□□□ -1.02
HLA-DMB-260ENST00000477537 OR2J3O76001 311 aa8.66□□□□□ -1.02
HLA-DMB-260ENST00000477537 AMY1AP04745 511 aa8.66□□□□□ -1.02
HLA-DMB-260ENST00000477537 FCGR2BP31994 310 aaPredicted RBP8.66□□□□□ -1.02
HLA-DMB-260ENST00000477537 BRS3P32247 399 aa8.66□□□□□ -1.02
HLA-DMB-260ENST00000477537 RAB4BP61018 213 aa8.66□□□□□ -1.02
HLA-DMB-260ENST00000477537 DNLZQ5SXM8 178 aa8.66□□□□□ -1.02
HLA-DMB-260ENST00000477537 TMEM136Q6ZRR5 245 aa8.66□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms