RNA–Protein interactions for RNA: ENST00000472524.1

CCDC88B-205, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 779 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-205ENST00000472524 OR4E1P0C645 316 aa11.38□□□□□ -0.59
CCDC88B-205ENST00000472524 HLA-DRB4P13762 266 aa11.38□□□□□ -0.59
CCDC88B-205ENST00000472524 ANXA7P20073 488 aaKnown RBP11.38□□□□□ -0.59
CCDC88B-205ENST00000472524 ID1P41134 155 aa11.38□□□□□ -0.59
CCDC88B-205ENST00000472524 NUTF2P61970 127 aaKnown RBP11.38□□□□□ -0.59
CCDC88B-205ENST00000472524 POLR2GP62487 172 aaKnown RBP eCLIP11.38□□□□□ -0.59
CCDC88B-205ENST00000472524 C4orf46Q504U0 113 aa11.38□□□□□ -0.59
CCDC88B-205ENST00000472524 C1orf194Q5T5A4 169 aa11.38□□□□□ -0.59
CCDC88B-205ENST00000472524 GDF5OSQ5U4N7 250 aa11.38□□□□□ -0.59
CCDC88B-205ENST00000472524 ACOT7LQ6ZUV0 252 aa11.38□□□□□ -0.59
CCDC88B-205ENST00000472524 OR8I2Q8N0Y5 310 aa11.38□□□□□ -0.59
CCDC88B-205ENST00000472524 C2CD4CQ8TF44 421 aa11.38□□□□□ -0.59
CCDC88B-205ENST00000472524 HLA-DRB4X5D2U9 266 aa11.38□□□□□ -0.59
CCDC88B-205ENST00000472524 VPS13DQ5THJ4 4388 aa11.38□□□□□ -0.59
CCDC88B-205ENST00000472524 ELOA3CA0A087WX78 387 aaPredicted RBP11.37□□□□□ -0.59
CCDC88B-205ENST00000472524 SMCO3A2RU48 225 aa11.37□□□□□ -0.59
CCDC88B-205ENST00000472524 CENPXA8MT69 81 aa11.37□□□□□ -0.59
CCDC88B-205ENST00000472524 SSSCA1O60232 199 aa11.37□□□□□ -0.59
CCDC88B-205ENST00000472524 IFNA21P01568 189 aa11.37□□□□□ -0.59
CCDC88B-205ENST00000472524 GATA2P23769 480 aaPredicted RBP11.37□□□□□ -0.59
CCDC88B-205ENST00000472524 BTCP35070 178 aa11.37□□□□□ -0.59
CCDC88B-205ENST00000472524 FXYD7P58549 80 aa11.37□□□□□ -0.59
CCDC88B-205ENST00000472524 C1QTNF4Q9BXJ3 329 aa11.37□□□□□ -0.59
CCDC88B-205ENST00000472524 SLC25A22Q9H936 323 aa11.37□□□□□ -0.59
CCDC88B-205ENST00000472524 PSENENQ9NZ42 101 aa11.37□□□□□ -0.59
CCDC88B-205ENST00000472524 SOCS3O14543 225 aa11.36□□□□□ -0.59
CCDC88B-205ENST00000472524 SCGB1D2O95969 90 aa11.36□□□□□ -0.59
CCDC88B-205ENST00000472524 CFDP00746 253 aaPredicted RBP11.36□□□□□ -0.59
CCDC88B-205ENST00000472524 IL7P13232 177 aa11.36□□□□□ -0.59
CCDC88B-205ENST00000472524 ORM2P19652 201 aa11.36□□□□□ -0.59
CCDC88B-205ENST00000472524 HLA-DMBP28068 263 aa11.36□□□□□ -0.59
CCDC88B-205ENST00000472524 PSMB3P49720 205 aa11.36□□□□□ -0.59
CCDC88B-205ENST00000472524 ID3Q02535 119 aa11.36□□□□□ -0.59
CCDC88B-205ENST00000472524 LGALS9CQ6DKI2 356 aa11.36□□□□□ -0.59
CCDC88B-205ENST00000472524 TMEM182Q6ZP80 229 aaPredicted RBP11.36□□□□□ -0.59
CCDC88B-205ENST00000472524 BPIFCQ8NFQ6 507 aa11.36□□□□□ -0.59
CCDC88B-205ENST00000472524 OR4D5Q8NGN0 318 aa11.36□□□□□ -0.59
CCDC88B-205ENST00000472524 C7orf50Q9BRJ6 194 aaKnown RBP11.36□□□□□ -0.59
CCDC88B-205ENST00000472524 SLC25A32Q9H2D1 315 aa11.36□□□□□ -0.59
CCDC88B-205ENST00000472524 HRH4Q9H3N8 390 aa11.36□□□□□ -0.59
CCDC88B-205ENST00000472524 SAV1Q9H4B6 383 aaPredicted RBP11.36□□□□□ -0.59
CCDC88B-205ENST00000472524 FOXI2Q6ZQN5 318 aa11.35□□□□□ -0.59
CCDC88B-205ENST00000472524 Q6ZTC4 211 aa11.35□□□□□ -0.59
CCDC88B-205ENST00000472524 OR4B1Q8NGF8 309 aa11.35□□□□□ -0.59
CCDC88B-205ENST00000472524 OR1B1Q8NGR6 318 aa11.35□□□□□ -0.59
CCDC88B-205ENST00000472524 TMEM147Q9BVK8 224 aa11.35□□□□□ -0.59
CCDC88B-205ENST00000472524 CELA1Q9UNI1 258 aa11.35□□□□□ -0.59
CCDC88B-205ENST00000472524 ZNF98A6NK75 572 aa11.34□□□□□ -0.59
CCDC88B-205ENST00000472524 IGLL5B9A064 214 aa11.34□□□□□ -0.59
CCDC88B-205ENST00000472524 C11orf94C9JXX5 98 aa11.34□□□□□ -0.59
CCDC88B-205ENST00000472524 CCNKO75909 580 aa11.34□□□□□ -0.59
CCDC88B-205ENST00000472524 GALR1P47211 349 aa11.34□□□□□ -0.59
CCDC88B-205ENST00000472524 RRAS2P62070 204 aaPredicted RBP11.34□□□□□ -0.59
CCDC88B-205ENST00000472524 C16orf92Q96LL3 132 aa11.34□□□□□ -0.59
CCDC88B-205ENST00000472524 DOK5Q9P104 306 aa11.34□□□□□ -0.59
CCDC88B-205ENST00000472524 DNAH10Q8IVF4 4471 aa11.34□□□□□ -0.59
CCDC88B-205ENST00000472524 IGHV3OR16-12A0A075B7B8 117 aa11.33□□□□□ -0.6
CCDC88B-205ENST00000472524 F6UB75 175 aa11.33□□□□□ -0.6
CCDC88B-205ENST00000472524 ISLRO14498 428 aa11.33□□□□□ -0.6
CCDC88B-205ENST00000472524 METTL15P1P0C7V9 234 aa11.33□□□□□ -0.6
CCDC88B-205ENST00000472524 PRR20EP86478 221 aa11.33□□□□□ -0.6
CCDC88B-205ENST00000472524 PRR20CP86479 221 aa11.33□□□□□ -0.6
CCDC88B-205ENST00000472524 PRR20DP86480 221 aa11.33□□□□□ -0.6
CCDC88B-205ENST00000472524 PRR20BP86481 221 aa11.33□□□□□ -0.6
CCDC88B-205ENST00000472524 PRR20AP86496 221 aa11.33□□□□□ -0.6
CCDC88B-205ENST00000472524 IAH1Q2TAA2 248 aaPredicted RBP11.33□□□□□ -0.6
CCDC88B-205ENST00000472524 CYP2G1PQ6ZSU1 146 aa11.33□□□□□ -0.6
CCDC88B-205ENST00000472524 ZNF767PQ75MW2 155 aa11.33□□□□□ -0.6
CCDC88B-205ENST00000472524 TMEM144Q7Z5S9 345 aa11.33□□□□□ -0.6
CCDC88B-205ENST00000472524 RSG1Q9BU20 258 aa11.33□□□□□ -0.6
CCDC88B-205ENST00000472524 C20orf85Q9H1P6 137 aa11.33□□□□□ -0.6
CCDC88B-205ENST00000472524 GSKIPQ9P0R6 139 aa11.33□□□□□ -0.6
CCDC88B-205ENST00000472524 SLC45A2Q9UMX9 530 aa11.33□□□□□ -0.6
CCDC88B-205ENST00000472524 TRAV10A0A0B4J240 114 aa11.32□□□□□ -0.6
CCDC88B-205ENST00000472524 PMS2P5A8MQ11 134 aa11.32□□□□□ -0.6
CCDC88B-205ENST00000472524 IL5P05113 134 aa11.32□□□□□ -0.6
CCDC88B-205ENST00000472524 MEOX2P50222 304 aa11.32□□□□□ -0.6
CCDC88B-205ENST00000472524 SAMD13Q5VXD3 122 aa11.32□□□□□ -0.6
CCDC88B-205ENST00000472524 EBLN2Q6P2I7 272 aa11.32□□□□□ -0.6
CCDC88B-205ENST00000472524 ZBTB8BQ8NAP8 495 aaPredicted RBP11.32□□□□□ -0.6
CCDC88B-205ENST00000472524 SMIM8Q96KF7 97 aa11.32□□□□□ -0.6
CCDC88B-205ENST00000472524 C20orf173Q96LM9 149 aa11.32□□□□□ -0.6
CCDC88B-205ENST00000472524 SCRT1Q9BWW7 348 aa11.32□□□□□ -0.6
CCDC88B-205ENST00000472524 SLC35B3Q9H1N7 401 aa11.32□□□□□ -0.6
CCDC88B-205ENST00000472524 RPRMQ9NS64 109 aa11.32□□□□□ -0.6
CCDC88B-205ENST00000472524 S100A7P31151 101 aa11.31□□□□□ -0.6
CCDC88B-205ENST00000472524 PAX9P55771 341 aa11.31□□□□□ -0.6
CCDC88B-205ENST00000472524 TCTAP57738 103 aa11.31□□□□□ -0.6
CCDC88B-205ENST00000472524 FAM78BQ5VT40 261 aa11.31□□□□□ -0.6
CCDC88B-205ENST00000472524 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa11.31□□□□□ -0.6
CCDC88B-205ENST00000472524 ZNF709Q8N972 641 aa11.31□□□□□ -0.6
CCDC88B-205ENST00000472524 MITD1Q8WV92 249 aa11.31□□□□□ -0.6
CCDC88B-205ENST00000472524 APLNQ9ULZ1 77 aa11.31□□□□□ -0.6
CCDC88B-205ENST00000472524 A0A0J9YX75 114 aa11.3□□□□□ -0.6
CCDC88B-205ENST00000472524 H3BRN7 92 aa11.3□□□□□ -0.6
CCDC88B-205ENST00000472524 CCSO14618 274 aa11.3□□□□□ -0.6
CCDC88B-205ENST00000472524 PLA2G10O15496 165 aa11.3□□□□□ -0.6
CCDC88B-205ENST00000472524 LYRM1O43325 122 aa11.3□□□□□ -0.6
CCDC88B-205ENST00000472524 LINC00869P0C866 280 aa11.3□□□□□ -0.6
CCDC88B-205ENST00000472524 EMP1P54849 157 aa11.3□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 33.4 ms