RNA–Protein interactions for RNA: ENST00000468792.1

COL6A3-208, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2

Gene COL6A3, Length 329 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-208ENST00000468792 CD24P25063 80 aa5.98□□□□□ -1.45
COL6A3-208ENST00000468792 HIST1H2BBP33778 126 aa5.98□□□□□ -1.45
COL6A3-208ENST00000468792 CDX1P47902 265 aaPredicted RBP5.98□□□□□ -1.45
COL6A3-208ENST00000468792 RAB9AP51151 201 aa5.98□□□□□ -1.45
COL6A3-208ENST00000468792 HIST1H2BDP58876 126 aa5.98□□□□□ -1.45
COL6A3-208ENST00000468792 HIST1H2BCP62807 126 aa5.98□□□□□ -1.45
COL6A3-208ENST00000468792 HIST2H2BEQ16778 126 aa5.98□□□□□ -1.45
COL6A3-208ENST00000468792 FBLN7Q53RD9 439 aa5.98□□□□□ -1.45
COL6A3-208ENST00000468792 CENPWQ5EE01 88 aa5.98□□□□□ -1.45
COL6A3-208ENST00000468792 HIST2H2BFQ5QNW6 126 aaPredicted RBP5.98□□□□□ -1.45
COL6A3-208ENST00000468792 ZNF600Q6ZNG1 722 aa5.98□□□□□ -1.45
COL6A3-208ENST00000468792 C19orf35Q6ZS72 473 aa5.98□□□□□ -1.45
COL6A3-208ENST00000468792 BPIFA4PQ86YQ2 179 aa5.98□□□□□ -1.45
COL6A3-208ENST00000468792 ZFP82Q8N141 532 aa5.98□□□□□ -1.45
COL6A3-208ENST00000468792 C5orf56Q8N8D9 126 aa5.98□□□□□ -1.45
COL6A3-208ENST00000468792 PIFOQ8TCI5 191 aa5.98□□□□□ -1.45
COL6A3-208ENST00000468792 HIST1H2BHQ93079 126 aa5.98□□□□□ -1.45
COL6A3-208ENST00000468792 RNF125Q96EQ8 232 aa5.98□□□□□ -1.45
COL6A3-208ENST00000468792 BBC3Q96PG8 261 aaPredicted RBP5.98□□□□□ -1.45
COL6A3-208ENST00000468792 HIST1H2BNQ99877 126 aa5.98□□□□□ -1.45
COL6A3-208ENST00000468792 HIST1H2BMQ99879 126 aa5.98□□□□□ -1.45
COL6A3-208ENST00000468792 ATG101Q9BSB4 218 aa5.98□□□□□ -1.45
COL6A3-208ENST00000468792 PITPNC1Q9UKF7 332 aa5.98□□□□□ -1.45
COL6A3-208ENST00000468792 MOB4Q9Y3A3 225 aa5.98□□□□□ -1.45
COL6A3-208ENST00000468792 ZFYVE26Q68DK2 2539 aa5.97□□□□□ -1.45
COL6A3-208ENST00000468792 AKAP6Q13023 2319 aa5.97□□□□□ -1.45
COL6A3-208ENST00000468792 MED13LQ71F56 2210 aa5.97□□□□□ -1.45
COL6A3-208ENST00000468792 IGHV4-30-2A0A087WSY4 118 aa5.97□□□□□ -1.45
COL6A3-208ENST00000468792 SERTM2A0A1B0GWG4 89 aa5.97□□□□□ -1.45
COL6A3-208ENST00000468792 H3BUA1 57 aa5.97□□□□□ -1.45
COL6A3-208ENST00000468792 J3QLI3 93 aa5.97□□□□□ -1.45
COL6A3-208ENST00000468792 MRPS12O15235 138 aaKnown RBP5.97□□□□□ -1.45
COL6A3-208ENST00000468792 GNG7O60262 68 aa5.97□□□□□ -1.45
COL6A3-208ENST00000468792 ZNF253O75346 499 aa5.97□□□□□ -1.45
COL6A3-208ENST00000468792 RNF224P0DH78 156 aa5.97□□□□□ -1.45
COL6A3-208ENST00000468792 APELAP0DMC3 54 aa5.97□□□□□ -1.45
COL6A3-208ENST00000468792 IGLC2P0DOY2 106 aa5.97□□□□□ -1.45
COL6A3-208ENST00000468792 COX6B1P14854 86 aa5.97□□□□□ -1.45
COL6A3-208ENST00000468792 FABP9Q0Z7S8 132 aa5.97□□□□□ -1.45
COL6A3-208ENST00000468792 C19orf54Q5BKX5 351 aa5.97□□□□□ -1.45
COL6A3-208ENST00000468792 ACTL10Q5JWF8 245 aa5.97□□□□□ -1.45
COL6A3-208ENST00000468792 FAM120AOSQ5T036 256 aa5.97□□□□□ -1.45
COL6A3-208ENST00000468792 SAMD5Q5TGI4 173 aa5.97□□□□□ -1.45
COL6A3-208ENST00000468792 LRRC75A-AS1Q8N1F1 130 aa5.97□□□□□ -1.45
COL6A3-208ENST00000468792 NECAP1Q8NC96 275 aa5.97□□□□□ -1.45
COL6A3-208ENST00000468792 FMC1Q96HJ9 113 aa5.97□□□□□ -1.45
COL6A3-208ENST00000468792 GPR82Q96P67 336 aa5.97□□□□□ -1.45
COL6A3-208ENST00000468792 FAM103A1Q9BTL3 118 aaKnown RBP5.97□□□□□ -1.45
COL6A3-208ENST00000468792 MLST8Q9BVC4 326 aa5.97□□□□□ -1.45
COL6A3-208ENST00000468792 V9GYV3 84 aa5.97□□□□□ -1.45
COL6A3-208ENST00000468792 CELSR2Q9HCU4 2923 aa5.97□□□□□ -1.45
COL6A3-208ENST00000468792 LRRK2Q5S007 2527 aa5.96□□□□□ -1.45
COL6A3-208ENST00000468792 TRBV19A0A075B6N1 114 aa5.96□□□□□ -1.46
COL6A3-208ENST00000468792 TRBV7-1A0A0A6YYK4 115 aa5.96□□□□□ -1.46
COL6A3-208ENST00000468792 A0A1W2PPQ1 181 aa5.96□□□□□ -1.46
COL6A3-208ENST00000468792 SMIM27A0A1W2PRY6 76 aa5.96□□□□□ -1.46
COL6A3-208ENST00000468792 PGPA6NDG6 321 aa5.96□□□□□ -1.46
COL6A3-208ENST00000468792 PGPEP1LA6NFU8 196 aa5.96□□□□□ -1.46
COL6A3-208ENST00000468792 FBLL1A6NHQ2 334 aaKnown RBP5.96□□□□□ -1.46
COL6A3-208ENST00000468792 ZNF98A6NK75 572 aa5.96□□□□□ -1.46
COL6A3-208ENST00000468792 IGF1P05019 195 aa5.96□□□□□ -1.46
COL6A3-208ENST00000468792 CTSGP08311 255 aa5.96□□□□□ -1.46
COL6A3-208ENST00000468792 TRGC1P0CF51 173 aa5.96□□□□□ -1.46
COL6A3-208ENST00000468792 SMIM6P0DI80 62 aa5.96□□□□□ -1.46
COL6A3-208ENST00000468792 ERVFC1-1P60608 527 aa5.96□□□□□ -1.46
COL6A3-208ENST00000468792 RPL15P61313 204 aaKnown RBP5.96□□□□□ -1.46
COL6A3-208ENST00000468792 LYZP61626 148 aa5.96□□□□□ -1.46
COL6A3-208ENST00000468792 RANP62826 216 aaKnown RBP5.96□□□□□ -1.46
COL6A3-208ENST00000468792 SRSF1Q07955 248 aaKnown RBP eCLIP5.96□□□□□ -1.46
COL6A3-208ENST00000468792 CT83Q5H943 113 aa5.96□□□□□ -1.46
COL6A3-208ENST00000468792 RASL11AQ6T310 242 aa5.96□□□□□ -1.46
COL6A3-208ENST00000468792 OR4F17Q8NGA8 305 aa5.96□□□□□ -1.46
COL6A3-208ENST00000468792 ZNF502Q8TBZ5 544 aa5.96□□□□□ -1.46
COL6A3-208ENST00000468792 FRZBQ92765 325 aa5.96□□□□□ -1.46
COL6A3-208ENST00000468792 BEX4Q9NWD9 120 aaPredicted RBP5.96□□□□□ -1.46
COL6A3-208ENST00000468792 ZNF492Q9P255 531 aa5.96□□□□□ -1.46
COL6A3-208ENST00000468792 ABCA2Q9BZC7 2435 aa5.96□□□□□ -1.46
COL6A3-208ENST00000468792 CRYBG3Q68DQ2 2970 aa5.95□□□□□ -1.46
COL6A3-208ENST00000468792 SPG11Q96JI7 2443 aa5.95□□□□□ -1.46
COL6A3-208ENST00000468792 EPG5Q9HCE0 2579 aa5.95□□□□□ -1.46
COL6A3-208ENST00000468792 A0A096LNT2 108 aa5.95□□□□□ -1.46
COL6A3-208ENST00000468792 IGHV3-21A0A0B4J1V1 117 aa5.95□□□□□ -1.46
COL6A3-208ENST00000468792 A0A0U1RQK1 487 aa5.95□□□□□ -1.46
COL6A3-208ENST00000468792 ZNF320A2RRD8 509 aa5.95□□□□□ -1.46
COL6A3-208ENST00000468792 FAM231BA6NCW3 169 aa5.95□□□□□ -1.46
COL6A3-208ENST00000468792 A6NDX4 124 aa5.95□□□□□ -1.46
COL6A3-208ENST00000468792 FAM223BA6NKX1 122 aa5.95□□□□□ -1.46
COL6A3-208ENST00000468792 EREGO14944 169 aa5.95□□□□□ -1.46
COL6A3-208ENST00000468792 LTAP01374 205 aa5.95□□□□□ -1.46
COL6A3-208ENST00000468792 MT-ND6P03923 174 aa5.95□□□□□ -1.46
COL6A3-208ENST00000468792 TCRAP04437 139 aa5.95□□□□□ -1.46
COL6A3-208ENST00000468792 AMY1AP04745 511 aa5.95□□□□□ -1.46
COL6A3-208ENST00000468792 IL4P05112 153 aa5.95□□□□□ -1.46
COL6A3-208ENST00000468792 SLC25A5P05141 298 aaKnown RBP5.95□□□□□ -1.46
COL6A3-208ENST00000468792 RPL7P18124 248 aaKnown RBP5.95□□□□□ -1.46
COL6A3-208ENST00000468792 LOXL1Q08397 574 aaPredicted RBP5.95□□□□□ -1.46
COL6A3-208ENST00000468792 RPEL1Q2QD12 228 aa5.95□□□□□ -1.46
COL6A3-208ENST00000468792 KLF17Q5JT82 389 aaPredicted RBP5.95□□□□□ -1.46
COL6A3-208ENST00000468792 DNLZQ5SXM8 178 aa5.95□□□□□ -1.46
COL6A3-208ENST00000468792 IBA57Q5T440 356 aaKnown RBP5.95□□□□□ -1.46
Retrieved 100 of 20,778 RNA–protein pairs in 69.7 ms