RNA–Protein interactions for RNA: ENST00000463004.5

RBM39-223, Transcript of RNA binding motif protein 39, human

TSL 5

Gene RBM39, Length 4,580 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
RBM39-223	ENST00000463004	RRN3P1	Q2M238	152 aa		9.43	□□□□□ -0.9
RBM39-223	ENST00000463004	PAPPA-AS1	Q5QFB9	102 aa		9.43	□□□□□ -0.9
RBM39-223	ENST00000463004	RFNG	Q9Y644	331 aa		9.43	□□□□□ -0.9
RBM39-223	ENST00000463004	TRAV34	A0A0B4J273	112 aa		9.43	□□□□□ -0.9
RBM39-223	ENST00000463004	EIF3G	O75821	320 aa	Known RBP eCLIP	9.43	□□□□□ -0.9
RBM39-223	ENST00000463004	IGHV4-39	P01824	125 aa		9.43	□□□□□ -0.9
RBM39-223	ENST00000463004	PPBP	P02775	128 aa		9.43	□□□□□ -0.9
RBM39-223	ENST00000463004	TCRA	P04437	139 aa		9.43	□□□□□ -0.9
RBM39-223	ENST00000463004	BATF	Q16520	125 aa		9.43	□□□□□ -0.9
RBM39-223	ENST00000463004	SGK494	Q96LW2	274 aa		9.43	□□□□□ -0.9
RBM39-223	ENST00000463004	BDP1	A6H8Y1	2624 aa		9.43	□□□□□ -0.9
RBM39-223	ENST00000463004	ATP6V0E1	O15342	81 aa		9.43	□□□□□ -0.9
RBM39-223	ENST00000463004	CSN3	P07498	182 aa		9.43	□□□□□ -0.9
RBM39-223	ENST00000463004	CDX1	P47902	265 aa	Predicted RBP	9.43	□□□□□ -0.9
RBM39-223	ENST00000463004	FER1L6-AS1	Q8NA97	138 aa		9.43	□□□□□ -0.9
RBM39-223	ENST00000463004	GPR61	Q9BZJ8	451 aa		9.43	□□□□□ -0.9
RBM39-223	ENST00000463004	GSX1	Q9H4S2	264 aa	Predicted RBP	9.43	□□□□□ -0.9
RBM39-223	ENST00000463004	PCNX3	Q9H6A9	2034 aa		9.43	□□□□□ -0.9
RBM39-223	ENST00000463004	LINC01549	A6NIU2	74 aa		9.43	□□□□□ -0.9
RBM39-223	ENST00000463004	IGLV1-47	P01700	117 aa		9.43	□□□□□ -0.9
RBM39-223	ENST00000463004	LDLRAD2	Q5SZI1	272 aa		9.43	□□□□□ -0.9
RBM39-223	ENST00000463004	TSKU	Q8WUA8	353 aa		9.43	□□□□□ -0.9
RBM39-223	ENST00000463004	ANKHD1	Q8IWZ3	2542 aa	Known RBP	9.42	□□□□□ -0.9
RBM39-223	ENST00000463004	ZNF207	O43670	478 aa	Known RBP	9.42	□□□□□ -0.9
RBM39-223	ENST00000463004	WT1-AS	Q06250	92 aa		9.42	□□□□□ -0.9
RBM39-223	ENST00000463004	DAZ1	Q9NQZ3	744 aa	Known RBP	9.42	□□□□□ -0.9
RBM39-223	ENST00000463004	TMEM97	Q5BJF2	176 aa		9.42	□□□□□ -0.9
RBM39-223	ENST00000463004	IGFBPL1	Q8WX77	278 aa		9.42	□□□□□ -0.9
RBM39-223	ENST00000463004	RNF114	Q9Y508	228 aa		9.42	□□□□□ -0.9
RBM39-223	ENST00000463004	SPTAN1	Q13813	2472 aa	Known RBP	9.42	□□□□□ -0.9
RBM39-223	ENST00000463004	FAM53A	Q6NSI3	398 aa	Predicted RBP	9.42	□□□□□ -0.9
RBM39-223	ENST00000463004	OCC1	Q8TAD7	63 aa		9.42	□□□□□ -0.9
RBM39-223	ENST00000463004	NDUFA4	O00483	81 aa		9.41	□□□□□ -0.9
RBM39-223	ENST00000463004	SPRN	Q5BIV9	151 aa		9.41	□□□□□ -0.9
RBM39-223	ENST00000463004	OR10AG1	Q8NH19	301 aa		9.41	□□□□□ -0.9
RBM39-223	ENST00000463004	SCRT1	Q9BWW7	348 aa		9.41	□□□□□ -0.9
RBM39-223	ENST00000463004	CGB1	A6NKQ9	187 aa		9.41	□□□□□ -0.9
RBM39-223	ENST00000463004	PMS2P5	A8MQ11	134 aa		9.41	□□□□□ -0.9
RBM39-223	ENST00000463004	IGHV3OR16-13	A0A075B7E8	117 aa		9.41	□□□□□ -0.9
RBM39-223	ENST00000463004	IGHV3-74	A0A0B4J1X5	117 aa		9.41	□□□□□ -0.9
RBM39-223	ENST00000463004	TCAP	O15273	167 aa		9.41	□□□□□ -0.9
RBM39-223	ENST00000463004	FOLR2	P14207	255 aa		9.41	□□□□□ -0.9
RBM39-223	ENST00000463004	CRIP3	Q6Q6R5	217 aa		9.41	□□□□□ -0.9
RBM39-223	ENST00000463004	PIP4P2	Q8N4L2	257 aa		9.41	□□□□□ -0.9
RBM39-223	ENST00000463004	GNB1L	Q9BYB4	327 aa		9.41	□□□□□ -0.9
RBM39-223	ENST00000463004	ZNRD1	Q9P1U0	126 aa		9.41	□□□□□ -0.9
RBM39-223	ENST00000463004	EML5	Q05BV3	1969 aa		9.41	□□□□□ -0.9
RBM39-223	ENST00000463004	MED12L	Q86YW9	2145 aa		9.41	□□□□□ -0.9
RBM39-223	ENST00000463004	TRGV11	A0A075B6L2	103 aa		9.41	□□□□□ -0.9
RBM39-223	ENST00000463004	MST1L	Q2TV78	715 aa		9.41	□□□□□ -0.9
RBM39-223	ENST00000463004	SRRM4	A7MD48	611 aa	Known RBP	9.4	□□□□□ -0.9
RBM39-223	ENST00000463004	HNRNPA3	P51991	378 aa	Known RBP	9.4	□□□□□ -0.9
RBM39-223	ENST00000463004	LINC01551	Q86U37	167 aa		9.4	□□□□□ -0.9
RBM39-223	ENST00000463004	LY6G5B	Q8NDX9	201 aa		9.4	□□□□□ -0.9
RBM39-223	ENST00000463004	IGHV3-49	A0A0A0MS15	119 aa		9.4	□□□□□ -0.9
RBM39-223	ENST00000463004	CENPVL3	A0A0U1RRI6	287 aa		9.4	□□□□□ -0.9
RBM39-223	ENST00000463004	SRI	P30626	198 aa		9.4	□□□□□ -0.9
RBM39-223	ENST00000463004	ZNF138	P52744	262 aa		9.4	□□□□□ -0.9
RBM39-223	ENST00000463004	SPATA31B1P	Q5VZV4	182 aa		9.4	□□□□□ -0.9
RBM39-223	ENST00000463004	TMEM183A	Q8IXX5	376 aa		9.4	□□□□□ -0.9
RBM39-223	ENST00000463004	TRAV5	A0A0B4J249	113 aa		9.4	□□□□□ -0.91
RBM39-223	ENST00000463004	IGLC7	A0M8Q6	106 aa		9.4	□□□□□ -0.91
RBM39-223	ENST00000463004		M0R143	59 aa		9.4	□□□□□ -0.91
RBM39-223	ENST00000463004	PRR20E	P86478	221 aa		9.4	□□□□□ -0.91
RBM39-223	ENST00000463004	PRR20C	P86479	221 aa		9.4	□□□□□ -0.91
RBM39-223	ENST00000463004	PRR20D	P86480	221 aa		9.4	□□□□□ -0.91
RBM39-223	ENST00000463004	PRR20B	P86481	221 aa		9.4	□□□□□ -0.91
RBM39-223	ENST00000463004	PRR20A	P86496	221 aa		9.4	□□□□□ -0.91
RBM39-223	ENST00000463004	RUSC1-AS1	Q66K80	236 aa		9.4	□□□□□ -0.91
RBM39-223	ENST00000463004	TMEM89	A2RUT3	159 aa		9.39	□□□□□ -0.91
RBM39-223	ENST00000463004	FAM231B	A6NCW3	169 aa		9.39	□□□□□ -0.91
RBM39-223	ENST00000463004	SRSF3	P84103	164 aa	Known RBP	9.39	□□□□□ -0.91
RBM39-223	ENST00000463004	C1QL4	Q86Z23	238 aa		9.39	□□□□□ -0.91
RBM39-223	ENST00000463004	YLPM1	P49750	1951 aa	Known RBP	9.39	□□□□□ -0.91
RBM39-223	ENST00000463004	IGHV4-61	A0A0C4DH41	118 aa		9.39	□□□□□ -0.91
RBM39-223	ENST00000463004	LINC01559	Q495D7	138 aa		9.39	□□□□□ -0.91
RBM39-223	ENST00000463004	KLF17	Q5JT82	389 aa	Predicted RBP	9.39	□□□□□ -0.91
RBM39-223	ENST00000463004	TMEM170A	Q8WVE7	144 aa		9.39	□□□□□ -0.91
RBM39-223	ENST00000463004	KIR2DL4	Q99706	377 aa		9.39	□□□□□ -0.91
RBM39-223	ENST00000463004	AMBP	P02760	352 aa		9.39	□□□□□ -0.91
RBM39-223	ENST00000463004	SHANK1	Q9Y566	2161 aa		9.39	□□□□□ -0.91
RBM39-223	ENST00000463004	IGHV3-66	A0A0C4DH42	116 aa		9.39	□□□□□ -0.91
RBM39-223	ENST00000463004	HTN1	P15515	57 aa		9.39	□□□□□ -0.91
RBM39-223	ENST00000463004	ARL6IP6	Q8N6S5	226 aa		9.39	□□□□□ -0.91
RBM39-223	ENST00000463004	ZNF492	Q9P255	531 aa		9.39	□□□□□ -0.91
RBM39-223	ENST00000463004	VPREB3	Q9UKI3	123 aa		9.39	□□□□□ -0.91
RBM39-223	ENST00000463004	HIGD1C	A8MV81	97 aa		9.38	□□□□□ -0.91
RBM39-223	ENST00000463004	LEPROTL1	O95214	131 aa		9.38	□□□□□ -0.91
RBM39-223	ENST00000463004	PSG3	Q16557	428 aa		9.38	□□□□□ -0.91
RBM39-223	ENST00000463004	HAPLN4	Q86UW8	402 aa		9.38	□□□□□ -0.91
RBM39-223	ENST00000463004	IGLC1	P0CG04	106 aa		9.38	□□□□□ -0.91
RBM39-223	ENST00000463004	CNTFR	P26992	372 aa		9.38	□□□□□ -0.91
RBM39-223	ENST00000463004	GNG5	P63218	68 aa		9.38	□□□□□ -0.91
RBM39-223	ENST00000463004	CT83	Q5H943	113 aa		9.38	□□□□□ -0.91
RBM39-223	ENST00000463004	TMEM136	Q6ZRR5	245 aa		9.38	□□□□□ -0.91
RBM39-223	ENST00000463004	ORMDL3	Q8N138	153 aa		9.38	□□□□□ -0.91
RBM39-223	ENST00000463004	LYPD6B	Q8NI32	183 aa		9.38	□□□□□ -0.91
RBM39-223	ENST00000463004	AP5S1	Q9NUS5	200 aa		9.38	□□□□□ -0.91
RBM39-223	ENST00000463004	LSM4	Q9Y4Z0	139 aa	Known RBP	9.38	□□□□□ -0.91
RBM39-223	ENST00000463004	SLC17A3	O00476	420 aa		9.38	□□□□□ -0.91

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