RNA–Protein interactions for RNA: ENST00000454830.6

CLK3-203, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 3,787 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-203ENST00000454830 SRP14P37108 136 aaKnown RBP10.78□□□□□ -0.68
CLK3-203ENST00000454830 RNF125Q96EQ8 232 aa10.78□□□□□ -0.68
CLK3-203ENST00000454830 ATP6V0E1O15342 81 aa10.77□□□□□ -0.68
CLK3-203ENST00000454830 HIST1H1BP16401 226 aaKnown RBP10.77□□□□□ -0.68
CLK3-203ENST00000454830 ZNF843Q8N446 348 aa10.77□□□□□ -0.68
CLK3-203ENST00000454830 C11orf52Q96A22 123 aa10.77□□□□□ -0.68
CLK3-203ENST00000454830 SOX21Q9Y651 276 aaPredicted RBP10.77□□□□□ -0.68
CLK3-203ENST00000454830 ZNF705GA8MUZ8 300 aaPredicted RBP10.77□□□□□ -0.69
CLK3-203ENST00000454830 SRD5A3Q9H8P0 318 aa10.77□□□□□ -0.69
CLK3-203ENST00000454830 HIF1ANQ9NWT6 349 aa10.77□□□□□ -0.69
CLK3-203ENST00000454830 IGHV4-38-2P0DP08 117 aa10.77□□□□□ -0.69
CLK3-203ENST00000454830 OR4F17Q8NGA8 305 aa10.77□□□□□ -0.69
CLK3-203ENST00000454830 SCGB2A1O75556 95 aa10.76□□□□□ -0.69
CLK3-203ENST00000454830 GPR183P32249 361 aa10.76□□□□□ -0.69
CLK3-203ENST00000454830 ZNF329Q86UD4 541 aa10.76□□□□□ -0.69
CLK3-203ENST00000454830 FANCD2OSQ96PS1 177 aa10.76□□□□□ -0.69
CLK3-203ENST00000454830 Q9H3A6 140 aa10.76□□□□□ -0.69
CLK3-203ENST00000454830 TRAPPC1Q9Y5R8 145 aa10.76□□□□□ -0.69
CLK3-203ENST00000454830 IGHV1-69DA0A0B4J2H0 117 aa10.76□□□□□ -0.69
CLK3-203ENST00000454830 ISLRO14498 428 aa10.76□□□□□ -0.69
CLK3-203ENST00000454830 IGHV1-69P01742 117 aa10.76□□□□□ -0.69
CLK3-203ENST00000454830 OR8I2Q8N0Y5 310 aa10.76□□□□□ -0.69
CLK3-203ENST00000454830 LINC01548A6NM66 108 aa10.76□□□□□ -0.69
CLK3-203ENST00000454830 C9JCJ5 164 aa10.76□□□□□ -0.69
CLK3-203ENST00000454830 TGOLN2O43493 480 aa10.76□□□□□ -0.69
CLK3-203ENST00000454830 RPEL1Q2QD12 228 aa10.76□□□□□ -0.69
CLK3-203ENST00000454830 IBA57Q5T440 356 aaKnown RBP10.76□□□□□ -0.69
CLK3-203ENST00000454830 GFI1BQ5VTD9 330 aa10.76□□□□□ -0.69
CLK3-203ENST00000454830 EXOC3-AS1Q8N2X6 119 aa10.76□□□□□ -0.69
CLK3-203ENST00000454830 CA1P00915 261 aaPredicted RBP10.75□□□□□ -0.69
CLK3-203ENST00000454830 RHOGP84095 191 aa10.75□□□□□ -0.69
CLK3-203ENST00000454830 BPIFA4PQ86YQ2 179 aa10.75□□□□□ -0.69
CLK3-203ENST00000454830 LINC00518Q8N0U6 118 aa10.75□□□□□ -0.69
CLK3-203ENST00000454830 ARL2-SNX15V9GYD0 113 aa10.75□□□□□ -0.69
CLK3-203ENST00000454830 NDUFS8O00217 210 aa10.75□□□□□ -0.69
CLK3-203ENST00000454830 MSMBP08118 114 aa10.75□□□□□ -0.69
CLK3-203ENST00000454830 CD99P14209 185 aa10.75□□□□□ -0.69
CLK3-203ENST00000454830 C15orf32Q32M92 178 aa10.75□□□□□ -0.69
CLK3-203ENST00000454830 Q8N6K4 173 aa10.75□□□□□ -0.69
CLK3-203ENST00000454830 IGLV11-55A0A075B6I3 123 aa10.75□□□□□ -0.69
CLK3-203ENST00000454830 IGHV3OR16-13A0A075B7E8 117 aa10.75□□□□□ -0.69
CLK3-203ENST00000454830 IGHV3-74A0A0B4J1X5 117 aa10.75□□□□□ -0.69
CLK3-203ENST00000454830 NPIPB5A8MRT5 1133 aa10.75□□□□□ -0.69
CLK3-203ENST00000454830 GPR61Q9BZJ8 451 aa10.75□□□□□ -0.69
CLK3-203ENST00000454830 EPDR1Q9UM22 224 aa10.75□□□□□ -0.69
CLK3-203ENST00000454830 PVRIGQ6DKI7 326 aa10.74□□□□□ -0.69
CLK3-203ENST00000454830 TRAV30A0A087WSZ9 112 aa10.74□□□□□ -0.69
CLK3-203ENST00000454830 TTC9CQ8N5M4 171 aa10.74□□□□□ -0.69
CLK3-203ENST00000454830 SPOCK3Q9BQ16 436 aa10.74□□□□□ -0.69
CLK3-203ENST00000454830 KLF2Q9Y5W3 355 aaPredicted RBP10.74□□□□□ -0.69
CLK3-203ENST00000454830 H3BUX3 64 aa10.74□□□□□ -0.69
CLK3-203ENST00000454830 UBE2CO00762 179 aa10.74□□□□□ -0.69
CLK3-203ENST00000454830 NDUFS6O75380 124 aaKnown RBP10.74□□□□□ -0.69
CLK3-203ENST00000454830 IER3P46695 156 aa10.74□□□□□ -0.69
CLK3-203ENST00000454830 PAX8Q06710 450 aa10.74□□□□□ -0.69
CLK3-203ENST00000454830 MRPL54Q6P161 138 aaKnown RBP10.74□□□□□ -0.69
CLK3-203ENST00000454830 GOLT1AQ6ZVE7 132 aa10.74□□□□□ -0.69
CLK3-203ENST00000454830 BCL6BQ8N143 479 aaPredicted RBP10.74□□□□□ -0.69
CLK3-203ENST00000454830 ZNF491Q8N8L2 437 aa10.74□□□□□ -0.69
CLK3-203ENST00000454830 TRAV8-1A0A0A6YYK1 113 aa10.73□□□□□ -0.69
CLK3-203ENST00000454830 XKRY2A2RUG3 117 aa10.73□□□□□ -0.69
CLK3-203ENST00000454830 ZNF98A6NK75 572 aa10.73□□□□□ -0.69
CLK3-203ENST00000454830 GGCTO75223 188 aaKnown RBP10.73□□□□□ -0.69
CLK3-203ENST00000454830 HLA-DRB1P01911 266 aa10.73□□□□□ -0.69
CLK3-203ENST00000454830 EBI3Q14213 229 aa10.73□□□□□ -0.69
CLK3-203ENST00000454830 CLEC19AQ6UXS0 136 aa10.73□□□□□ -0.69
CLK3-203ENST00000454830 C17orf77Q96MU5 243 aa10.73□□□□□ -0.69
CLK3-203ENST00000454830 IL36BQ9NZH7 164 aa10.73□□□□□ -0.69
CLK3-203ENST00000454830 AMY1AP04745 511 aa10.73□□□□□ -0.69
CLK3-203ENST00000454830 FABP4P15090 132 aa10.73□□□□□ -0.69
CLK3-203ENST00000454830 CBLN1P23435 193 aa10.73□□□□□ -0.69
CLK3-203ENST00000454830 MEOX2P50222 304 aa10.73□□□□□ -0.69
CLK3-203ENST00000454830 ASCL2Q99929 193 aa10.73□□□□□ -0.69
CLK3-203ENST00000454830 CELSR1Q9NYQ6 3014 aa10.73□□□□□ -0.69
CLK3-203ENST00000454830 IGHV3-49A0A0A0MS15 119 aa10.73□□□□□ -0.69
CLK3-203ENST00000454830 GATCO43716 136 aaKnown RBP10.73□□□□□ -0.69
CLK3-203ENST00000454830 TOMM40O96008 361 aa10.73□□□□□ -0.69
CLK3-203ENST00000454830 HIST1H1EP10412 219 aaKnown RBP10.73□□□□□ -0.69
CLK3-203ENST00000454830 GP9P14770 177 aa10.73□□□□□ -0.69
CLK3-203ENST00000454830 USF2Q15853 346 aaPredicted RBP10.73□□□□□ -0.69
CLK3-203ENST00000454830 C5orf17Q8NAS9 161 aa10.73□□□□□ -0.69
CLK3-203ENST00000454830 IMMP2LQ96T52 175 aa10.73□□□□□ -0.69
CLK3-203ENST00000454830 CDC42EP3Q9UKI2 254 aa10.73□□□□□ -0.69
CLK3-203ENST00000454830 SONP18583 2426 aaKnown RBP10.73□□□□□ -0.69
CLK3-203ENST00000454830 IGHV3-66A0A0C4DH42 116 aa10.72□□□□□ -0.69
CLK3-203ENST00000454830 TGFAP01135 160 aa10.72□□□□□ -0.69
CLK3-203ENST00000454830 CLEC3BP05452 202 aa10.72□□□□□ -0.69
CLK3-203ENST00000454830 S100A7AQ86SG5 101 aa10.72□□□□□ -0.69
CLK3-203ENST00000454830 PRNTQ86SH4 94 aa10.72□□□□□ -0.69
CLK3-203ENST00000454830 OR10D4PQ8NGN7 298 aa10.72□□□□□ -0.69
CLK3-203ENST00000454830 TMEM68Q96MH6 324 aa10.72□□□□□ -0.69
CLK3-203ENST00000454830 ZNF586Q9NXT0 402 aa10.72□□□□□ -0.69
CLK3-203ENST00000454830 GAR1Q9NY12 217 aaKnown RBP10.72□□□□□ -0.69
CLK3-203ENST00000454830 B4DSR2 109 aa10.72□□□□□ -0.69
CLK3-203ENST00000454830 ZNF207O43670 478 aaKnown RBP10.72□□□□□ -0.69
CLK3-203ENST00000454830 DAZAP1Q96EP5 407 aaKnown RBP10.72□□□□□ -0.69
CLK3-203ENST00000454830 CHRDL1Q9BU40 450 aa10.72□□□□□ -0.69
CLK3-203ENST00000454830 TAS2R60P59551 318 aa10.72□□□□□ -0.69
CLK3-203ENST00000454830 RPL19P84098 196 aaKnown RBP10.72□□□□□ -0.69
CLK3-203ENST00000454830 BTF3L4Q96K17 158 aa10.72□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 63.5 ms