RNA–Protein interactions for RNA: ENST00000423058.6

SCN1A-204, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SCN1A, Length 8,191 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-204ENST00000423058 DERL1Q9BUN8 251 aa5.69□□□□□ -1.5
SCN1A-204ENST00000423058 NHP2Q9NX24 153 aaKnown RBP5.69□□□□□ -1.5
SCN1A-204ENST00000423058 EPOPA6NHQ4 379 aa5.69□□□□□ -1.5
SCN1A-204ENST00000423058 CD5LO43866 347 aa5.69□□□□□ -1.5
SCN1A-204ENST00000423058 ANAPC13Q9BS18 74 aa5.69□□□□□ -1.5
SCN1A-204ENST00000423058 NCOR1O75376 2440 aa5.69□□□□□ -1.5
SCN1A-204ENST00000423058 A0A1W2PRE2 83 aa5.68□□□□□ -1.5
SCN1A-204ENST00000423058 ZNF876PQ49A33 203 aa5.68□□□□□ -1.5
SCN1A-204ENST00000423058 IGHV3-64A0A075B6Q5 118 aa5.68□□□□□ -1.5
SCN1A-204ENST00000423058 TPTE2P1Q5T6R2 138 aa5.68□□□□□ -1.5
SCN1A-204ENST00000423058 ZNF48Q96MX3 618 aaPredicted RBP5.68□□□□□ -1.5
SCN1A-204ENST00000423058 GGTLC1Q9BX51 225 aa5.68□□□□□ -1.5
SCN1A-204ENST00000423058 NUP210Q8TEM1 1887 aaPredicted RBP5.68□□□□□ -1.5
SCN1A-204ENST00000423058 IGHV1-18A0A0C4DH31 117 aa5.68□□□□□ -1.5
SCN1A-204ENST00000423058 IGHV3-73A0A0B4J1V6 119 aa5.68□□□□□ -1.5
SCN1A-204ENST00000423058 TEX48A0A1B0GUV7 120 aa5.68□□□□□ -1.5
SCN1A-204ENST00000423058 GFI1BQ5VTD9 330 aa5.68□□□□□ -1.5
SCN1A-204ENST00000423058 GTF3AQ92664 365 aaKnown RBP5.68□□□□□ -1.5
SCN1A-204ENST00000423058 AMELYQ99218 206 aa5.68□□□□□ -1.5
SCN1A-204ENST00000423058 CLDN16Q9Y5I7 305 aa5.68□□□□□ -1.5
SCN1A-204ENST00000423058 USF3Q68DE3 2245 aa5.68□□□□□ -1.5
SCN1A-204ENST00000423058 OSTCQ9NRP0 149 aa5.68□□□□□ -1.5
SCN1A-204ENST00000423058 A0A0G2JMZ2 1700 aa5.68□□□□□ -1.5
SCN1A-204ENST00000423058 LRRC37A2A6NM11 1700 aa5.68□□□□□ -1.5
SCN1A-204ENST00000423058 TRBV25-1A0A075B6N4 114 aa5.68□□□□□ -1.5
SCN1A-204ENST00000423058 CD24P25063 80 aa5.68□□□□□ -1.5
SCN1A-204ENST00000423058 TMEM105Q8N8V8 129 aa5.68□□□□□ -1.5
SCN1A-204ENST00000423058 PPP1R3EQ9H7J1 279 aa5.68□□□□□ -1.5
SCN1A-204ENST00000423058 DKK4Q9UBT3 224 aa5.68□□□□□ -1.5
SCN1A-204ENST00000423058 ROS1P08922 2347 aa5.67□□□□□ -1.5
SCN1A-204ENST00000423058 TMEM178BH3BS89 294 aa5.67□□□□□ -1.5
SCN1A-204ENST00000423058 GZMMP51124 257 aa5.67□□□□□ -1.5
SCN1A-204ENST00000423058 TRGV9Q99603 122 aa5.67□□□□□ -1.5
SCN1A-204ENST00000423058 SPRR3Q9UBC9 169 aa5.67□□□□□ -1.5
SCN1A-204ENST00000423058 SLAQ13239 276 aa5.67□□□□□ -1.5
SCN1A-204ENST00000423058 A0A0G2JMM0 328 aa5.67□□□□□ -1.5
SCN1A-204ENST00000423058 A0A1W2PPB8 328 aa5.67□□□□□ -1.5
SCN1A-204ENST00000423058 A0A1W2PRS3 328 aa5.67□□□□□ -1.5
SCN1A-204ENST00000423058 KIR3DP1A8MWS1 328 aa5.67□□□□□ -1.5
SCN1A-204ENST00000423058 ZFAND6Q6FIF0 208 aa5.67□□□□□ -1.5
SCN1A-204ENST00000423058 CITED2Q99967 270 aaPredicted RBP5.67□□□□□ -1.5
SCN1A-204ENST00000423058 SLC25A39Q9BZJ4 359 aaPredicted RBP5.67□□□□□ -1.5
SCN1A-204ENST00000423058 DAZ1Q9NQZ3 744 aaKnown RBP5.67□□□□□ -1.5
SCN1A-204ENST00000423058 A0A0U1RRA0 63 aa5.67□□□□□ -1.5
SCN1A-204ENST00000423058 NPIPB5A8MRT5 1133 aa5.67□□□□□ -1.5
SCN1A-204ENST00000423058 J3QLI3 93 aa5.67□□□□□ -1.5
SCN1A-204ENST00000423058 GATA4P43694 442 aa5.67□□□□□ -1.5
SCN1A-204ENST00000423058 CD200R1LQ6Q8B3 271 aa5.67□□□□□ -1.5
SCN1A-204ENST00000423058 SLC25A48Q6ZT89 311 aaKnown RBP5.67□□□□□ -1.5
SCN1A-204ENST00000423058 IL17RELQ6ZVW7 336 aa5.67□□□□□ -1.5
SCN1A-204ENST00000423058 RNASE7Q9H1E1 156 aaKnown RBP5.67□□□□□ -1.5
SCN1A-204ENST00000423058 PLXNA3P51805 1871 aa5.67□□□□□ -1.5
SCN1A-204ENST00000423058 ERVH48-1M5A8F1 160 aa5.67□□□□□ -1.5
SCN1A-204ENST00000423058 FCN3O75636 299 aa5.67□□□□□ -1.5
SCN1A-204ENST00000423058 IGHV1-46P01743 117 aa5.67□□□□□ -1.5
SCN1A-204ENST00000423058 IGHV1-8P0DP01 117 aa5.67□□□□□ -1.5
SCN1A-204ENST00000423058 TMEM155Q4W5P6 130 aa5.67□□□□□ -1.5
SCN1A-204ENST00000423058 MRPL14Q6P1L8 145 aaKnown RBP5.67□□□□□ -1.5
SCN1A-204ENST00000423058 IFI27L1Q96BM0 104 aa5.67□□□□□ -1.5
SCN1A-204ENST00000423058 PLXNA2O75051 1894 aa5.67□□□□□ -1.5
SCN1A-204ENST00000423058 TRBV6-7A0A0A0MS04 114 aa5.67□□□□□ -1.5
SCN1A-204ENST00000423058 RHODO00212 210 aa5.67□□□□□ -1.5
SCN1A-204ENST00000423058 DEFB130BP0DP73 79 aa5.67□□□□□ -1.5
SCN1A-204ENST00000423058 DEFB130AP0DP74 79 aa5.67□□□□□ -1.5
SCN1A-204ENST00000423058 SUPT4H1P63272 117 aaKnown RBP5.67□□□□□ -1.5
SCN1A-204ENST00000423058 SP5Q6BEB4 398 aaPredicted RBP5.67□□□□□ -1.5
SCN1A-204ENST00000423058 GVINP1Q7Z2Y8 2422 aa5.66□□□□□ -1.5
SCN1A-204ENST00000423058 LINC01619G3V211 115 aa5.66□□□□□ -1.5
SCN1A-204ENST00000423058 GNG5P63218 68 aa5.66□□□□□ -1.5
SCN1A-204ENST00000423058 C21orf62-AS1Q17RA5 79 aa5.66□□□□□ -1.5
SCN1A-204ENST00000423058 TMEM200BQ69YZ2 307 aa5.66□□□□□ -1.5
SCN1A-204ENST00000423058 LYPD1Q8N2G4 141 aa5.66□□□□□ -1.5
SCN1A-204ENST00000423058 WFDC12Q8WWY7 111 aa5.66□□□□□ -1.5
SCN1A-204ENST00000423058 C1orf159Q96HA4 380 aa5.66□□□□□ -1.5
SCN1A-204ENST00000423058 NEUROG3Q9Y4Z2 214 aa5.66□□□□□ -1.5
SCN1A-204ENST00000423058 OBSL1O75147 1896 aa5.66□□□□□ -1.5
SCN1A-204ENST00000423058 IGHV1-3A0A0C4DH29 117 aa5.66□□□□□ -1.5
SCN1A-204ENST00000423058 DUTP33316 252 aaKnown RBP5.66□□□□□ -1.5
SCN1A-204ENST00000423058 GAGE13Q4V321 117 aa5.66□□□□□ -1.5
SCN1A-204ENST00000423058 DSCR8Q96T75 97 aa5.66□□□□□ -1.5
SCN1A-204ENST00000423058 KIAA1549Q9HCM3 1950 aa5.66□□□□□ -1.5
SCN1A-204ENST00000423058 LDLRAD4O15165 306 aa5.66□□□□□ -1.5
SCN1A-204ENST00000423058 GATA2P23769 480 aaPredicted RBP5.66□□□□□ -1.5
SCN1A-204ENST00000423058 Q5PR19 223 aa5.66□□□□□ -1.5
SCN1A-204ENST00000423058 UBE2E2Q96LR5 201 aa5.66□□□□□ -1.5
SCN1A-204ENST00000423058 PLSCR4Q9NRQ2 329 aa5.66□□□□□ -1.5
SCN1A-204ENST00000423058 SIP14410 1827 aa5.66□□□□□ -1.5
SCN1A-204ENST00000423058 SNAI2O43623 268 aa5.66□□□□□ -1.5
SCN1A-204ENST00000423058 RAMP3O60896 148 aa5.66□□□□□ -1.5
SCN1A-204ENST00000423058 CRLF1O75462 422 aa5.66□□□□□ -1.5
SCN1A-204ENST00000423058 IGHV3-53P01767 116 aa5.66□□□□□ -1.5
SCN1A-204ENST00000423058 TSKUQ8WUA8 353 aa5.66□□□□□ -1.5
SCN1A-204ENST00000423058 PRDM13Q9H4Q3 707 aa5.66□□□□□ -1.5
SCN1A-204ENST00000423058 MMP23AO75900 390 aa5.66□□□□□ -1.5
SCN1A-204ENST00000423058 FXYD7P58549 80 aa5.66□□□□□ -1.5
SCN1A-204ENST00000423058 ZNF114Q8NC26 417 aa5.66□□□□□ -1.5
SCN1A-204ENST00000423058 CARHSP1Q9Y2V2 147 aaKnown RBP5.66□□□□□ -1.5
SCN1A-204ENST00000423058 NPC2P61916 151 aa5.66□□□□□ -1.5
SCN1A-204ENST00000423058 C5orf64Q2M2E5 130 aa5.66□□□□□ -1.5
SCN1A-204ENST00000423058 TRPT1Q86TN4 253 aaKnown RBP5.66□□□□□ -1.5
Retrieved 100 of 20,778 RNA–protein pairs in 78.3 ms