RNA–Protein interactions for RNA: ENST00000419110.5

HMGB3-202, Transcript of high mobility group box 3, humanhuman

APPRIS ALT2 TSL 3

Gene HMGB3, Length 707 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-202ENST00000419110 S4R3C0 116 aa4.65□□□□□ -1.67
HMGB3-202ENST00000419110 CSMD1Q96PZ7 3565 aa4.65□□□□□ -1.67
HMGB3-202ENST00000419110 ANKRD34BA5PLL1 514 aa4.64□□□□□ -1.67
HMGB3-202ENST00000419110 LINC01548A6NM66 108 aa4.64□□□□□ -1.67
HMGB3-202ENST00000419110 H3BRN7 92 aa4.64□□□□□ -1.67
HMGB3-202ENST00000419110 PAX4O43316 350 aa4.64□□□□□ -1.67
HMGB3-202ENST00000419110 NDUFS6O75380 124 aaKnown RBP4.64□□□□□ -1.67
HMGB3-202ENST00000419110 IGHV3-23P01764 117 aa4.64□□□□□ -1.67
HMGB3-202ENST00000419110 IGHG4P01861 327 aa4.64□□□□□ -1.67
HMGB3-202ENST00000419110 HSPB1P04792 205 aaKnown RBP4.64□□□□□ -1.67
HMGB3-202ENST00000419110 ELANEP08246 267 aa4.64□□□□□ -1.67
HMGB3-202ENST00000419110 SFTA3P0C7M3 94 aa4.64□□□□□ -1.67
HMGB3-202ENST00000419110 PPIFP30405 207 aaKnown RBP4.64□□□□□ -1.67
HMGB3-202ENST00000419110 ARL3P36405 182 aa4.64□□□□□ -1.67
HMGB3-202ENST00000419110 RAB9AP51151 201 aa4.64□□□□□ -1.67
HMGB3-202ENST00000419110 HILS1P60008 231 aa4.64□□□□□ -1.67
HMGB3-202ENST00000419110 ICAM4Q14773 271 aa4.64□□□□□ -1.67
HMGB3-202ENST00000419110 MLANAQ16655 118 aa4.64□□□□□ -1.67
HMGB3-202ENST00000419110 KHDC1LQ5JSQ8 128 aa4.64□□□□□ -1.67
HMGB3-202ENST00000419110 SPATA31B1PQ5VZV4 182 aa4.64□□□□□ -1.67
HMGB3-202ENST00000419110 TEX38Q6PEX7 206 aa4.64□□□□□ -1.67
HMGB3-202ENST00000419110 CLEC19AQ6UXS0 136 aa4.64□□□□□ -1.67
HMGB3-202ENST00000419110 MIR17HGQ75NE6 70 aa4.64□□□□□ -1.67
HMGB3-202ENST00000419110 LINC00305Q7Z4B0 112 aa4.64□□□□□ -1.67
HMGB3-202ENST00000419110 KRTAP19-1Q8IUB9 90 aa4.64□□□□□ -1.67
HMGB3-202ENST00000419110 Q8N2B8 174 aa4.64□□□□□ -1.67
HMGB3-202ENST00000419110 UHRF2Q96PU4 802 aa4.64□□□□□ -1.67
HMGB3-202ENST00000419110 TXNDC17Q9BRA2 123 aa4.64□□□□□ -1.67
HMGB3-202ENST00000419110 PAXXQ9BUH6 204 aa4.64□□□□□ -1.67
HMGB3-202ENST00000419110 GSX1Q9H4S2 264 aaPredicted RBP4.64□□□□□ -1.67
HMGB3-202ENST00000419110 DNAJC4Q9NNZ3 241 aa4.64□□□□□ -1.67
HMGB3-202ENST00000419110 RABAC1Q9UI14 185 aa4.64□□□□□ -1.67
HMGB3-202ENST00000419110 VAX2Q9UIW0 290 aa4.64□□□□□ -1.67
HMGB3-202ENST00000419110 PUS1Q9Y606 427 aaKnown RBP eCLIP4.64□□□□□ -1.67
HMGB3-202ENST00000419110 OTOGQ6ZRI0 2925 aa4.64□□□□□ -1.67
HMGB3-202ENST00000419110 F8P00451 2351 aa4.63□□□□□ -1.67
HMGB3-202ENST00000419110 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP4.63□□□□□ -1.67
HMGB3-202ENST00000419110 C11orf94C9JXX5 98 aa4.63□□□□□ -1.67
HMGB3-202ENST00000419110 F6UZH7 168 aa4.63□□□□□ -1.67
HMGB3-202ENST00000419110 F8W036 122 aa4.63□□□□□ -1.67
HMGB3-202ENST00000419110 PDE6DO43924 150 aa4.63□□□□□ -1.67
HMGB3-202ENST00000419110 EIF3GO75821 320 aaKnown RBP eCLIP4.63□□□□□ -1.67
HMGB3-202ENST00000419110 LGALS1P09382 135 aaKnown RBP4.63□□□□□ -1.67
HMGB3-202ENST00000419110 PSMB8P28062 276 aa4.63□□□□□ -1.67
HMGB3-202ENST00000419110 BMI1P35226 326 aa4.63□□□□□ -1.67
HMGB3-202ENST00000419110 CEBPGP53567 150 aa4.63□□□□□ -1.67
HMGB3-202ENST00000419110 UBE2G2P60604 165 aa4.63□□□□□ -1.67
HMGB3-202ENST00000419110 PMS2P11Q13670 270 aa4.63□□□□□ -1.67
HMGB3-202ENST00000419110 CST9LP1Q5W188 147 aa4.63□□□□□ -1.67
HMGB3-202ENST00000419110 CCDC28AQ8IWP9 274 aa4.63□□□□□ -1.67
HMGB3-202ENST00000419110 OR4F17Q8NGA8 305 aa4.63□□□□□ -1.67
HMGB3-202ENST00000419110 OR4F5Q8NH21 305 aa4.63□□□□□ -1.67
HMGB3-202ENST00000419110 RXFP4Q8TDU9 374 aa4.63□□□□□ -1.67
HMGB3-202ENST00000419110 TMEM37Q8WXS4 190 aa4.63□□□□□ -1.67
HMGB3-202ENST00000419110 LINC00052Q96N35 136 aa4.63□□□□□ -1.67
HMGB3-202ENST00000419110 OR4F4Q96R69 305 aa4.63□□□□□ -1.67
HMGB3-202ENST00000419110 METTL26Q96S19 204 aa4.63□□□□□ -1.67
HMGB3-202ENST00000419110 TCEAL7Q9BRU2 100 aa4.63□□□□□ -1.67
HMGB3-202ENST00000419110 SHANK2-AS3Q9BTD1 123 aa4.63□□□□□ -1.67
HMGB3-202ENST00000419110 SCRT1Q9BWW7 348 aa4.63□□□□□ -1.67
HMGB3-202ENST00000419110 SLC25A2Q9BXI2 301 aa4.63□□□□□ -1.67
HMGB3-202ENST00000419110 SLC25A39Q9BZJ4 359 aaPredicted RBP4.63□□□□□ -1.67
HMGB3-202ENST00000419110 SLC35B3Q9H1N7 401 aa4.63□□□□□ -1.67
HMGB3-202ENST00000419110 SEPSECSQ9HD40 501 aaKnown RBP4.63□□□□□ -1.67
HMGB3-202ENST00000419110 MXRA5Q9NR99 2828 aa4.63□□□□□ -1.67
HMGB3-202ENST00000419110 ZNF469Q96JG9 3925 aaPredicted RBP4.63□□□□□ -1.67
HMGB3-202ENST00000419110 FLNBO75369 2602 aaKnown RBP4.62□□□□□ -1.67
HMGB3-202ENST00000419110 ANK3Q12955 4377 aaKnown RBP4.62□□□□□ -1.67
HMGB3-202ENST00000419110 WI2-2373I1.2A0A1W2PRP0 233 aa4.62□□□□□ -1.67
HMGB3-202ENST00000419110 TMEM218A2RU14 115 aa4.62□□□□□ -1.67
HMGB3-202ENST00000419110 INAFM1C9JVW0 142 aa4.62□□□□□ -1.67
HMGB3-202ENST00000419110 PPP5D1E7EU14 171 aa4.62□□□□□ -1.67
HMGB3-202ENST00000419110 TMEM250H0YL14 139 aa4.62□□□□□ -1.67
HMGB3-202ENST00000419110 NDUFA4O00483 81 aa4.62□□□□□ -1.67
HMGB3-202ENST00000419110 TCF21O43680 179 aa4.62□□□□□ -1.67
HMGB3-202ENST00000419110 PAGE4O60829 102 aa4.62□□□□□ -1.67
HMGB3-202ENST00000419110 GGCTO75223 188 aaKnown RBP4.62□□□□□ -1.67
HMGB3-202ENST00000419110 IGHV3-11P01762 117 aa4.62□□□□□ -1.67
HMGB3-202ENST00000419110 CD5P06127 495 aa4.62□□□□□ -1.67
HMGB3-202ENST00000419110 CTSGP08311 255 aa4.62□□□□□ -1.67
HMGB3-202ENST00000419110 GP9P14770 177 aa4.62□□□□□ -1.67
HMGB3-202ENST00000419110 RPL7P18124 248 aaKnown RBP4.62□□□□□ -1.67
HMGB3-202ENST00000419110 ATF4P18848 351 aaPredicted RBP4.62□□□□□ -1.67
HMGB3-202ENST00000419110 ADMP35318 185 aa4.62□□□□□ -1.67
HMGB3-202ENST00000419110 CCL20P78556 96 aa4.62□□□□□ -1.67
HMGB3-202ENST00000419110 USF2Q15853 346 aaPredicted RBP4.62□□□□□ -1.67
HMGB3-202ENST00000419110 SOHLH1Q5JUK2 328 aa4.62□□□□□ -1.67
HMGB3-202ENST00000419110 Q6ZSV7 163 aa4.62□□□□□ -1.67
HMGB3-202ENST00000419110 ZNF329Q86UD4 541 aa4.62□□□□□ -1.67
HMGB3-202ENST00000419110 BPIFA4PQ86YQ2 179 aa4.62□□□□□ -1.67
HMGB3-202ENST00000419110 SVBPQ8N300 66 aa4.62□□□□□ -1.67
HMGB3-202ENST00000419110 KLHDC1Q8N7A1 406 aa4.62□□□□□ -1.67
HMGB3-202ENST00000419110 ZNF491Q8N8L2 437 aa4.62□□□□□ -1.67
HMGB3-202ENST00000419110 CYB561D1Q8N8Q1 229 aa4.62□□□□□ -1.67
HMGB3-202ENST00000419110 SUN5Q8TC36 379 aa4.62□□□□□ -1.67
HMGB3-202ENST00000419110 GRAMD2BQ96HH9 432 aa4.62□□□□□ -1.67
HMGB3-202ENST00000419110 GPR82Q96P67 336 aa4.62□□□□□ -1.67
HMGB3-202ENST00000419110 SMR3AQ99954 134 aa4.62□□□□□ -1.67
HMGB3-202ENST00000419110 NIPSNAP3BQ9BS92 247 aa4.62□□□□□ -1.67
HMGB3-202ENST00000419110 CHRDL1Q9BU40 450 aa4.62□□□□□ -1.67
Retrieved 100 of 20,778 RNA–protein pairs in 84 ms