RNA–Protein interactions for RNA: ENST00000416769.2

LINC00339-202, long intergenic non-protein coding RNA 339, humanhuman

TSL 1 (best) BASIC

Gene LINC00339, Length 1,077 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00339-202ENST00000416769 TMEM144Q7Z5S9 345 aa9.51□□□□□ -0.89
LINC00339-202ENST00000416769 OR5C1Q8NGR4 320 aa9.51□□□□□ -0.89
LINC00339-202ENST00000416769 PHLDA1Q8WV24 401 aaPredicted RBP9.51□□□□□ -0.89
LINC00339-202ENST00000416769 NPIPB3Q92617 1050 aa9.51□□□□□ -0.89
LINC00339-202ENST00000416769 BSCL2Q96G97 398 aaPredicted RBP9.51□□□□□ -0.89
LINC00339-202ENST00000416769 ZNF414Q96IQ9 312 aa9.51□□□□□ -0.89
LINC00339-202ENST00000416769 HYLS1Q96M11 299 aa9.51□□□□□ -0.89
LINC00339-202ENST00000416769 MFFQ9GZY8 342 aa9.51□□□□□ -0.89
LINC00339-202ENST00000416769 MRPL36Q9P0J6 103 aaKnown RBP9.51□□□□□ -0.89
LINC00339-202ENST00000416769 RNF222A6NCQ9 220 aa9.5□□□□□ -0.89
LINC00339-202ENST00000416769 ARPC5O15511 151 aa9.5□□□□□ -0.89
LINC00339-202ENST00000416769 GNG7O60262 68 aa9.5□□□□□ -0.89
LINC00339-202ENST00000416769 SCGB2A1O75556 95 aa9.5□□□□□ -0.89
LINC00339-202ENST00000416769 CTSGP08311 255 aa9.5□□□□□ -0.89
LINC00339-202ENST00000416769 BMI1P35226 326 aa9.5□□□□□ -0.89
LINC00339-202ENST00000416769 RND2P52198 227 aa9.5□□□□□ -0.89
LINC00339-202ENST00000416769 NANOS2P60321 138 aaKnown RBP9.5□□□□□ -0.89
LINC00339-202ENST00000416769 OR2F1Q13607 317 aa9.5□□□□□ -0.89
LINC00339-202ENST00000416769 VWC2Q2TAL6 325 aa9.5□□□□□ -0.89
LINC00339-202ENST00000416769 RBPMS2Q6ZRY4 209 aaKnown RBP9.5□□□□□ -0.89
LINC00339-202ENST00000416769 Q6ZWC4 215 aa9.5□□□□□ -0.89
LINC00339-202ENST00000416769 LILRB2Q8N423 598 aa9.5□□□□□ -0.89
LINC00339-202ENST00000416769 RNF183Q96D59 192 aa9.5□□□□□ -0.89
LINC00339-202ENST00000416769 A0A0D9SG52 128 aa9.49□□□□□ -0.89
LINC00339-202ENST00000416769 OR2T8A6NH00 312 aa9.49□□□□□ -0.89
LINC00339-202ENST00000416769 NUPL2O15504 423 aaKnown RBP9.49□□□□□ -0.89
LINC00339-202ENST00000416769 TGOLN2O43493 480 aa9.49□□□□□ -0.89
LINC00339-202ENST00000416769 DFFBO76075 338 aa9.49□□□□□ -0.89
LINC00339-202ENST00000416769 ZNF345Q14585 488 aa9.49□□□□□ -0.89
LINC00339-202ENST00000416769 APRG1Q8IVJ8 170 aa9.49□□□□□ -0.89
LINC00339-202ENST00000416769 THAP8Q8NA92 274 aa9.49□□□□□ -0.89
LINC00339-202ENST00000416769 UBAC2Q8NBM4 344 aa9.49□□□□□ -0.89
LINC00339-202ENST00000416769 ACY3Q96HD9 319 aa9.49□□□□□ -0.89
LINC00339-202ENST00000416769 TMEM147Q9BVK8 224 aa9.49□□□□□ -0.89
LINC00339-202ENST00000416769 UQCC1Q9NVA1 299 aa9.49□□□□□ -0.89
LINC00339-202ENST00000416769 IGKV1D-37A0A075B6S9 117 aa9.48□□□□□ -0.89
LINC00339-202ENST00000416769 SMCO3A2RU48 225 aa9.48□□□□□ -0.89
LINC00339-202ENST00000416769 TAAR5O14804 337 aa9.48□□□□□ -0.89
LINC00339-202ENST00000416769 DEFB4AO15263 64 aa9.48□□□□□ -0.89
LINC00339-202ENST00000416769 IGLC1P0CG04 106 aa9.48□□□□□ -0.89
LINC00339-202ENST00000416769 OR10J1P30954 320 aa9.48□□□□□ -0.89
LINC00339-202ENST00000416769 ADMP35318 185 aa9.48□□□□□ -0.89
LINC00339-202ENST00000416769 AP2S1P53680 142 aaPredicted RBP9.48□□□□□ -0.89
LINC00339-202ENST00000416769 APOC4P55056 127 aa9.48□□□□□ -0.89
LINC00339-202ENST00000416769 YPEL3P61236 119 aaPredicted RBP9.48□□□□□ -0.89
LINC00339-202ENST00000416769 AKR1C1Q04828 323 aa9.48□□□□□ -0.89
LINC00339-202ENST00000416769 ZFP69Q49AA0 526 aa9.48□□□□□ -0.89
LINC00339-202ENST00000416769 TEPPQ6URK8 271 aa9.48□□□□□ -0.89
LINC00339-202ENST00000416769 KCNRGQ8N5I3 272 aa9.48□□□□□ -0.89
LINC00339-202ENST00000416769 TMEM190Q8WZ59 177 aa9.48□□□□□ -0.89
LINC00339-202ENST00000416769 TRGV9Q99603 122 aa9.48□□□□□ -0.89
LINC00339-202ENST00000416769 ATP5SQ99766 215 aa9.48□□□□□ -0.89
LINC00339-202ENST00000416769 CHRDL1Q9BU40 450 aa9.48□□□□□ -0.89
LINC00339-202ENST00000416769 TP53TG1Q9Y2A0 90 aa9.48□□□□□ -0.89
LINC00339-202ENST00000416769 FAT2Q9NYQ8 4349 aa9.47□□□□□ -0.89
LINC00339-202ENST00000416769 IGHV3-49A0A0A0MS15 119 aa9.47□□□□□ -0.89
LINC00339-202ENST00000416769 TRAV25A0A0B4J276 109 aa9.47□□□□□ -0.89
LINC00339-202ENST00000416769 IGKV1-17P01599 117 aa9.47□□□□□ -0.89
LINC00339-202ENST00000416769 CXCL2P19875 107 aa9.47□□□□□ -0.89
LINC00339-202ENST00000416769 EIF2B2P49770 351 aaKnown RBP9.47□□□□□ -0.89
LINC00339-202ENST00000416769 RELQ04864 619 aaPredicted RBP9.47□□□□□ -0.89
LINC00339-202ENST00000416769 CLINT1Q14677 625 aa9.47□□□□□ -0.89
LINC00339-202ENST00000416769 LGALSLQ3ZCW2 172 aaPredicted RBP9.47□□□□□ -0.89
LINC00339-202ENST00000416769 TIGITQ495A1 244 aa9.47□□□□□ -0.89
LINC00339-202ENST00000416769 SPAG8Q99932 426 aaPredicted RBP9.47□□□□□ -0.89
LINC00339-202ENST00000416769 PARD6GQ9BYG4 376 aaPredicted RBP9.47□□□□□ -0.89
LINC00339-202ENST00000416769 SMIM3Q9BZL3 60 aa9.47□□□□□ -0.89
LINC00339-202ENST00000416769 WFDC1Q9HC57 220 aa9.47□□□□□ -0.89
LINC00339-202ENST00000416769 MRPL27Q9P0M9 148 aaKnown RBP9.47□□□□□ -0.89
LINC00339-202ENST00000416769 FBXL17Q9UF56 701 aa9.47□□□□□ -0.89
LINC00339-202ENST00000416769 WDR83OSQ9Y284 106 aa9.47□□□□□ -0.89
LINC00339-202ENST00000416769 KLK5Q9Y337 293 aaPredicted RBP9.47□□□□□ -0.89
LINC00339-202ENST00000416769 DNAH2Q9P225 4427 aa9.47□□□□□ -0.89
LINC00339-202ENST00000416769 IGKV1OR2-108A0A075B7D4 117 aa9.46□□□□□ -0.9
LINC00339-202ENST00000416769 ZFP92A6NM28 416 aa9.46□□□□□ -0.9
LINC00339-202ENST00000416769 TSPAN4O14817 238 aa9.46□□□□□ -0.9
LINC00339-202ENST00000416769 MPDU1O75352 247 aa9.46□□□□□ -0.9
LINC00339-202ENST00000416769 IFNA5P01569 189 aa9.46□□□□□ -0.9
LINC00339-202ENST00000416769 FABP1P07148 127 aa9.46□□□□□ -0.9
LINC00339-202ENST00000416769 RAB31Q13636 194 aa9.46□□□□□ -0.9
LINC00339-202ENST00000416769 LGALS9CQ6DKI2 356 aa9.46□□□□□ -0.9
LINC00339-202ENST00000416769 ZNF600Q6ZNG1 722 aa9.46□□□□□ -0.9
LINC00339-202ENST00000416769 STPG3Q8N7X2 389 aa9.46□□□□□ -0.9
LINC00339-202ENST00000416769 Q8WTZ3 238 aa9.46□□□□□ -0.9
LINC00339-202ENST00000416769 MARC2Q969Z3 335 aa9.46□□□□□ -0.9
LINC00339-202ENST00000416769 C20orf24Q9BUV8 137 aa9.46□□□□□ -0.9
LINC00339-202ENST00000416769 WDR61Q9GZS3 305 aaKnown RBP9.46□□□□□ -0.9
LINC00339-202ENST00000416769 MAP6D1Q9H9H5 199 aa9.46□□□□□ -0.9
LINC00339-202ENST00000416769 UFC1Q9Y3C8 167 aa9.46□□□□□ -0.9
LINC00339-202ENST00000416769 AGRNO00468 2067 aa9.46□□□□□ -0.9
LINC00339-202ENST00000416769 DYNC1H1Q14204 4646 aaKnown RBP9.46□□□□□ -0.9
LINC00339-202ENST00000416769 IGKV3-7A0A075B6H7 116 aa9.45□□□□□ -0.9
LINC00339-202ENST00000416769 NDUFA4O00483 81 aa9.45□□□□□ -0.9
LINC00339-202ENST00000416769 TOMM40O96008 361 aa9.45□□□□□ -0.9
LINC00339-202ENST00000416769 CFDP00746 253 aaPredicted RBP9.45□□□□□ -0.9
LINC00339-202ENST00000416769 TFPI2P48307 235 aa9.45□□□□□ -0.9
LINC00339-202ENST00000416769 SELENOTP62341 195 aa9.45□□□□□ -0.9
LINC00339-202ENST00000416769 ZNF266Q14584 549 aa9.45□□□□□ -0.9
LINC00339-202ENST00000416769 CYP2G1PQ6ZSU1 146 aa9.45□□□□□ -0.9
LINC00339-202ENST00000416769 TMUB2Q71RG4 321 aa9.45□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 40.1 ms