RNA–Protein interactions for RNA: ENST00000416400.1

VPS54-204, Transcript of VPS54, GARP complex subunit, humanhuman

TSL 1 (best)

Gene VPS54, Length 1,277 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-204ENST00000416400 ZNF780BQ9Y6R6 833 aa2.68□□□□□ -1.98
VPS54-204ENST00000416400 GLI3P10071 1580 aa2.68□□□□□ -1.98
VPS54-204ENST00000416400 LTN1O94822 1766 aa2.68□□□□□ -1.98
VPS54-204ENST00000416400 RBBP6Q7Z6E9 1792 aaKnown RBP2.68□□□□□ -1.98
VPS54-204ENST00000416400 BAZ2AQ9UIF9 1905 aaKnown RBP2.68□□□□□ -1.98
VPS54-204ENST00000416400 DOT1LQ8TEK3 1739 aa2.68□□□□□ -1.98
VPS54-204ENST00000416400 MYH9P35579 1960 aaKnown RBP2.67□□□□□ -1.98
VPS54-204ENST00000416400 UBR2Q8IWV8 1755 aa2.67□□□□□ -1.98
VPS54-204ENST00000416400 IGHV2-26A0A0B4J1V2 119 aa2.67□□□□□ -1.98
VPS54-204ENST00000416400 PITX3O75364 302 aa2.67□□□□□ -1.98
VPS54-204ENST00000416400 KRTAP5-8O75690 187 aa2.67□□□□□ -1.98
VPS54-204ENST00000416400 DHRS3O75911 302 aa2.67□□□□□ -1.98
VPS54-204ENST00000416400 CDS2O95674 445 aa2.67□□□□□ -1.98
VPS54-204ENST00000416400 C1QCP02747 245 aa2.67□□□□□ -1.98
VPS54-204ENST00000416400 IGLC2P0DOY2 106 aa2.67□□□□□ -1.98
VPS54-204ENST00000416400 IGLC3P0DOY3 106 aa2.67□□□□□ -1.98
VPS54-204ENST00000416400 BCL2P10415 239 aa2.67□□□□□ -1.98
VPS54-204ENST00000416400 CD28P10747 220 aa2.67□□□□□ -1.98
VPS54-204ENST00000416400 NTF3P20783 257 aa2.67□□□□□ -1.98
VPS54-204ENST00000416400 CSRP1P21291 193 aaKnown RBP2.67□□□□□ -1.98
VPS54-204ENST00000416400 RHOAP61586 193 aa2.67□□□□□ -1.98
VPS54-204ENST00000416400 TBPL1P62380 186 aa2.67□□□□□ -1.98
VPS54-204ENST00000416400 SEC11AP67812 179 aa2.67□□□□□ -1.98
VPS54-204ENST00000416400 MMDQ15546 238 aa2.67□□□□□ -1.98
VPS54-204ENST00000416400 ARHGAP11BQ3KRB8 267 aa2.67□□□□□ -1.98
VPS54-204ENST00000416400 SPATA45Q537H7 98 aa2.67□□□□□ -1.98
VPS54-204ENST00000416400 OR10J3Q5JRS4 329 aa2.67□□□□□ -1.98
VPS54-204ENST00000416400 GLYATL3Q5SZD4 288 aa2.67□□□□□ -1.98
VPS54-204ENST00000416400 LDLRAD2Q5SZI1 272 aa2.67□□□□□ -1.98
VPS54-204ENST00000416400 TMPPEQ6ZT21 453 aa2.67□□□□□ -1.98
VPS54-204ENST00000416400 FA2HQ7L5A8 372 aa2.67□□□□□ -1.98
VPS54-204ENST00000416400 FAM19A1Q7Z5A9 133 aa2.67□□□□□ -1.98
VPS54-204ENST00000416400 HMGN2P46Q86SG4 172 aa2.67□□□□□ -1.98
VPS54-204ENST00000416400 BAGE3Q86Y29 109 aa2.67□□□□□ -1.98
VPS54-204ENST00000416400 BAGE2Q86Y30 109 aa2.67□□□□□ -1.98
VPS54-204ENST00000416400 GAPTQ8N292 157 aa2.67□□□□□ -1.98
VPS54-204ENST00000416400 SLC22A24Q8N4F4 322 aa2.67□□□□□ -1.98
VPS54-204ENST00000416400 OR10P1Q8NGE3 313 aa2.67□□□□□ -1.98
VPS54-204ENST00000416400 OR5A1Q8NGJ0 315 aa2.67□□□□□ -1.98
VPS54-204ENST00000416400 OR5D14Q8NGL3 314 aa2.67□□□□□ -1.98
VPS54-204ENST00000416400 OR2Y1Q8NGV0 311 aa2.67□□□□□ -1.98
VPS54-204ENST00000416400 OR11L1Q8NGX0 322 aa2.67□□□□□ -1.98
VPS54-204ENST00000416400 TSPAN32Q96QS1 320 aa2.67□□□□□ -1.98
VPS54-204ENST00000416400 CXCL16Q9H2A7 254 aa2.67□□□□□ -1.98
VPS54-204ENST00000416400 MANBALQ9NQG1 85 aa2.67□□□□□ -1.98
VPS54-204ENST00000416400 AK3Q9UIJ7 227 aa2.67□□□□□ -1.98
VPS54-204ENST00000416400 ANAPC10Q9UM13 185 aa2.67□□□□□ -1.98
VPS54-204ENST00000416400 HHLA2Q9UM44 414 aa2.67□□□□□ -1.98
VPS54-204ENST00000416400 ZNF443Q9Y2A4 671 aaPredicted RBP2.67□□□□□ -1.98
VPS54-204ENST00000416400 LSM5Q9Y4Y9 91 aaKnown RBP2.67□□□□□ -1.98
VPS54-204ENST00000416400 PXMP4Q9Y6I8 212 aa2.67□□□□□ -1.98
VPS54-204ENST00000416400 ALS2Q96Q42 1657 aa2.66□□□□□ -1.98
VPS54-204ENST00000416400 LY75O60449 1722 aa2.66□□□□□ -1.98
VPS54-204ENST00000416400 RICTORQ6R327 1708 aa2.66□□□□□ -1.98
VPS54-204ENST00000416400 SHANK3Q9BYB0 1731 aa2.66□□□□□ -1.98
VPS54-204ENST00000416400 IGLV2-18A0A075B6J9 118 aa2.66□□□□□ -1.98
VPS54-204ENST00000416400 IGLC7A0M8Q6 106 aa2.66□□□□□ -1.98
VPS54-204ENST00000416400 DPRXA6NFQ7 191 aa2.66□□□□□ -1.98
VPS54-204ENST00000416400 YPEL1O60688 119 aa2.66□□□□□ -1.98
VPS54-204ENST00000416400 IGLV3-27P01718 113 aa2.66□□□□□ -1.98
VPS54-204ENST00000416400 ISG15P05161 165 aa2.66□□□□□ -1.98
VPS54-204ENST00000416400 HMGN2P05204 90 aaKnown RBP2.66□□□□□ -1.98
VPS54-204ENST00000416400 ALOX5APP20292 161 aa2.66□□□□□ -1.98
VPS54-204ENST00000416400 RPS12P25398 132 aaKnown RBP2.66□□□□□ -1.98
VPS54-204ENST00000416400 TSPOP30536 169 aa2.66□□□□□ -1.98
VPS54-204ENST00000416400 RAB38P57729 211 aa2.66□□□□□ -1.98
VPS54-204ENST00000416400 KRTAP10-8P60410 259 aa2.66□□□□□ -1.98
VPS54-204ENST00000416400 CKS1BP61024 79 aa2.66□□□□□ -1.98
VPS54-204ENST00000416400 CCL7P80098 99 aa2.66□□□□□ -1.98
VPS54-204ENST00000416400 TMEM267Q0VDI3 215 aaPredicted RBP2.66□□□□□ -1.98
VPS54-204ENST00000416400 FUT5Q11128 374 aa2.66□□□□□ -1.98
VPS54-204ENST00000416400 FOXF1Q12946 379 aa2.66□□□□□ -1.98
VPS54-204ENST00000416400 LRP11Q86VZ4 500 aa2.66□□□□□ -1.98
VPS54-204ENST00000416400 LHFPL1Q86WI0 220 aa2.66□□□□□ -1.98
VPS54-204ENST00000416400 MUC15Q8N387 334 aa2.66□□□□□ -1.98
VPS54-204ENST00000416400 MIR7-3HGQ8N6C7 128 aa2.66□□□□□ -1.98
VPS54-204ENST00000416400 RNF182Q8N6D2 247 aa2.66□□□□□ -1.98
VPS54-204ENST00000416400 FER1L6-AS1Q8NA97 138 aa2.66□□□□□ -1.98
VPS54-204ENST00000416400 ST20-AS1Q8NBB2 130 aa2.66□□□□□ -1.98
VPS54-204ENST00000416400 OR51A4Q8NGJ6 313 aa2.66□□□□□ -1.98
VPS54-204ENST00000416400 PPTC7Q8NI37 304 aa2.66□□□□□ -1.98
VPS54-204ENST00000416400 GPR146Q96CH1 333 aa2.66□□□□□ -1.98
VPS54-204ENST00000416400 YPEL2Q96QA6 119 aa2.66□□□□□ -1.98
VPS54-204ENST00000416400 SPACA5Q96QH8 159 aa2.66□□□□□ -1.98
VPS54-204ENST00000416400 GPX7Q96SL4 187 aaPredicted RBP2.66□□□□□ -1.98
VPS54-204ENST00000416400 HSPB9Q9BQS6 159 aa2.66□□□□□ -1.98
VPS54-204ENST00000416400 RTBDNQ9BSG5 229 aaPredicted RBP2.66□□□□□ -1.98
VPS54-204ENST00000416400 SPANXDQ9BXN6 97 aa2.66□□□□□ -1.98
VPS54-204ENST00000416400 RSPO3Q9BXY4 272 aaPredicted RBP2.66□□□□□ -1.98
VPS54-204ENST00000416400 LPAR5Q9H1C0 372 aa2.66□□□□□ -1.98
VPS54-204ENST00000416400 MS4A6AQ9H2W1 248 aa2.66□□□□□ -1.98
VPS54-204ENST00000416400 ST20Q9HBF5 79 aa2.66□□□□□ -1.98
VPS54-204ENST00000416400 SLC39A9Q9NUM3 307 aa2.66□□□□□ -1.98
VPS54-204ENST00000416400 TMEM38BQ9NVV0 291 aa2.66□□□□□ -1.98
VPS54-204ENST00000416400 FAM206AQ9NX38 181 aa2.66□□□□□ -1.98
VPS54-204ENST00000416400 MRM2Q9UI43 246 aaKnown RBP2.66□□□□□ -1.98
VPS54-204ENST00000416400 IER3IP1Q9Y5U9 82 aa2.66□□□□□ -1.98
VPS54-204ENST00000416400 SLX4Q8IY92 1834 aa2.65□□□□□ -1.98
VPS54-204ENST00000416400 TAF1LQ8IZX4 1826 aa2.65□□□□□ -1.98
VPS54-204ENST00000416400 NAV1Q8NEY1 1877 aa2.65□□□□□ -1.98
Retrieved 100 of 20,778 RNA–protein pairs in 34.3 ms