RNA–Protein interactions for RNA: ENST00000416188.2

PHRF1-203, Transcript of PHD and ring finger domains 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene PHRF1, Length 5,227 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PHRF1-203ENST00000416188 SAA4P35542 130 aa12.77□□□□□ -0.36
PHRF1-203ENST00000416188 CA1P00915 261 aaPredicted RBP12.77□□□□□ -0.37
PHRF1-203ENST00000416188 PAX1P15863 534 aa12.77□□□□□ -0.37
PHRF1-203ENST00000416188 ADMP35318 185 aa12.77□□□□□ -0.37
PHRF1-203ENST00000416188 OSTCQ9NRP0 149 aa12.77□□□□□ -0.37
PHRF1-203ENST00000416188 LRRK1Q38SD2 2015 aa12.77□□□□□ -0.37
PHRF1-203ENST00000416188 LDLRAD2Q5SZI1 272 aa12.77□□□□□ -0.37
PHRF1-203ENST00000416188 MRPL16Q9NX20 251 aaKnown RBP12.77□□□□□ -0.37
PHRF1-203ENST00000416188 NDUFA3O95167 84 aa12.76□□□□□ -0.37
PHRF1-203ENST00000416188 C1QL4Q86Z23 238 aa12.76□□□□□ -0.37
PHRF1-203ENST00000416188 MBD3L1Q8WWY6 194 aa12.76□□□□□ -0.37
PHRF1-203ENST00000416188 GGTLC1Q9BX51 225 aa12.76□□□□□ -0.37
PHRF1-203ENST00000416188 FAM90A9PA6NNJ1 464 aa12.76□□□□□ -0.37
PHRF1-203ENST00000416188 DMRTA1Q5VZB9 504 aa12.76□□□□□ -0.37
PHRF1-203ENST00000416188 STHQ8IWL8 128 aa12.76□□□□□ -0.37
PHRF1-203ENST00000416188 TMEM170AQ8WVE7 144 aa12.76□□□□□ -0.37
PHRF1-203ENST00000416188 LEPP41159 167 aa12.76□□□□□ -0.37
PHRF1-203ENST00000416188 C3orf36Q3SXR2 165 aa12.76□□□□□ -0.37
PHRF1-203ENST00000416188 RUSC1-AS1Q66K80 236 aa12.76□□□□□ -0.37
PHRF1-203ENST00000416188 TMEM167AQ8TBQ9 72 aa12.76□□□□□ -0.37
PHRF1-203ENST00000416188 PEF1Q9UBV8 284 aaKnown RBP12.76□□□□□ -0.37
PHRF1-203ENST00000416188 SELENOKQ9Y6D0 94 aa12.76□□□□□ -0.37
PHRF1-203ENST00000416188 IGHV1-3A0A0C4DH29 117 aa12.75□□□□□ -0.37
PHRF1-203ENST00000416188 HIST1H2BKO60814 126 aa12.75□□□□□ -0.37
PHRF1-203ENST00000416188 HIST1H2BJP06899 126 aa12.75□□□□□ -0.37
PHRF1-203ENST00000416188 HIST1H2BOP23527 126 aa12.75□□□□□ -0.37
PHRF1-203ENST00000416188 HIST1H2BBP33778 126 aa12.75□□□□□ -0.37
PHRF1-203ENST00000416188 HIST1H2BDP58876 126 aa12.75□□□□□ -0.37
PHRF1-203ENST00000416188 HIST1H2BCP62807 126 aa12.75□□□□□ -0.37
PHRF1-203ENST00000416188 HIST2H2BEQ16778 126 aa12.75□□□□□ -0.37
PHRF1-203ENST00000416188 HIST2H2BFQ5QNW6 126 aaPredicted RBP12.75□□□□□ -0.37
PHRF1-203ENST00000416188 GFI1BQ5VTD9 330 aa12.75□□□□□ -0.37
PHRF1-203ENST00000416188 HIST1H2BHQ93079 126 aa12.75□□□□□ -0.37
PHRF1-203ENST00000416188 NUDT11Q96G61 164 aa12.75□□□□□ -0.37
PHRF1-203ENST00000416188 HIST1H2BNQ99877 126 aa12.75□□□□□ -0.37
PHRF1-203ENST00000416188 HIST1H2BMQ99879 126 aa12.75□□□□□ -0.37
PHRF1-203ENST00000416188 SHANK1Q9Y566 2161 aa12.75□□□□□ -0.37
PHRF1-203ENST00000416188 IGKV1-5P01602 117 aa12.75□□□□□ -0.37
PHRF1-203ENST00000416188 DEFB113Q30KQ7 82 aa12.75□□□□□ -0.37
PHRF1-203ENST00000416188 TEX38Q6PEX7 206 aa12.75□□□□□ -0.37
PHRF1-203ENST00000416188 C2orf88Q9BSF0 95 aa12.75□□□□□ -0.37
PHRF1-203ENST00000416188 ZNF581Q9P0T4 197 aa12.75□□□□□ -0.37
PHRF1-203ENST00000416188 MRPS16Q9Y3D3 137 aaKnown RBP12.75□□□□□ -0.37
PHRF1-203ENST00000416188 SRSF7Q16629 238 aaKnown RBP eCLIP12.75□□□□□ -0.37
PHRF1-203ENST00000416188 WFDC12Q8WWY7 111 aa12.75□□□□□ -0.37
PHRF1-203ENST00000416188 APOMO95445 188 aa12.75□□□□□ -0.37
PHRF1-203ENST00000416188 OR10J3Q5JRS4 329 aa12.75□□□□□ -0.37
PHRF1-203ENST00000416188 JKAMPQ9P055 326 aa12.75□□□□□ -0.37
PHRF1-203ENST00000416188 COLCA2A8K830 154 aa12.75□□□□□ -0.37
PHRF1-203ENST00000416188 PRTN3P24158 256 aa12.75□□□□□ -0.37
PHRF1-203ENST00000416188 TRAV3A0A0B4J244 114 aa12.74□□□□□ -0.37
PHRF1-203ENST00000416188 ETV2O00321 342 aaPredicted RBP12.74□□□□□ -0.37
PHRF1-203ENST00000416188 UBE2CO00762 179 aa12.74□□□□□ -0.37
PHRF1-203ENST00000416188 SPATA31B1PQ5VZV4 182 aa12.74□□□□□ -0.37
PHRF1-203ENST00000416188 ZNF329Q86UD4 541 aa12.74□□□□□ -0.37
PHRF1-203ENST00000416188 KLHL30-AS1Q8NEE0 82 aa12.74□□□□□ -0.37
PHRF1-203ENST00000416188 ARFGEF3Q5TH69 2177 aa12.74□□□□□ -0.37
PHRF1-203ENST00000416188 PAX8Q06710 450 aa12.74□□□□□ -0.37
PHRF1-203ENST00000416188 NMSQ5H8A3 153 aa12.74□□□□□ -0.37
PHRF1-203ENST00000416188 SAMD13Q5VXD3 122 aa12.74□□□□□ -0.37
PHRF1-203ENST00000416188 IL17RELQ6ZVW7 336 aa12.74□□□□□ -0.37
PHRF1-203ENST00000416188 ALKBH7Q9BT30 221 aaPredicted RBP12.74□□□□□ -0.37
PHRF1-203ENST00000416188 RFNGQ9Y644 331 aa12.74□□□□□ -0.37
PHRF1-203ENST00000416188 NPIPB5A8MRT5 1133 aa12.73□□□□□ -0.37
PHRF1-203ENST00000416188 CYTL1Q9NRR1 136 aa12.73□□□□□ -0.37
PHRF1-203ENST00000416188 ZNF257Q9Y2Q1 563 aa12.73□□□□□ -0.37
PHRF1-203ENST00000416188 IGKV1D-17A0A075B6S4 117 aa12.73□□□□□ -0.37
PHRF1-203ENST00000416188 TRAV21A0A0B4J279 112 aa12.73□□□□□ -0.37
PHRF1-203ENST00000416188 PMS2P5A8MQ11 134 aa12.73□□□□□ -0.37
PHRF1-203ENST00000416188 PRORYQ9H606 182 aa12.73□□□□□ -0.37
PHRF1-203ENST00000416188 STAG3L3P0CL85 134 aa12.73□□□□□ -0.37
PHRF1-203ENST00000416188 KLF17Q5JT82 389 aaPredicted RBP12.73□□□□□ -0.37
PHRF1-203ENST00000416188 FOXL2NBQ6ZUU3 175 aa12.73□□□□□ -0.37
PHRF1-203ENST00000416188 VOPP1Q96AW1 172 aa12.73□□□□□ -0.37
PHRF1-203ENST00000416188 SPG11Q96JI7 2443 aa12.73□□□□□ -0.37
PHRF1-203ENST00000416188 ZNF585BQ52M93 769 aa12.73□□□□□ -0.37
PHRF1-203ENST00000416188 TMEM42Q69YG0 159 aa12.73□□□□□ -0.37
PHRF1-203ENST00000416188 RPP25LQ8N5L8 163 aaKnown RBP12.73□□□□□ -0.37
PHRF1-203ENST00000416188 PTPN13Q12923 2485 aa12.73□□□□□ -0.37
PHRF1-203ENST00000416188 LTBP2Q14767 1821 aa12.72□□□□□ -0.37
PHRF1-203ENST00000416188 IGKV3D-20A0A0C4DH25 116 aa12.72□□□□□ -0.37
PHRF1-203ENST00000416188 PSG1P11464 419 aa12.72□□□□□ -0.37
PHRF1-203ENST00000416188 LINC00205P59089 165 aa12.72□□□□□ -0.37
PHRF1-203ENST00000416188 C15orf32Q32M92 178 aa12.72□□□□□ -0.37
PHRF1-203ENST00000416188 BUB1B-PAK6H3BSN5 160 aa12.72□□□□□ -0.37
PHRF1-203ENST00000416188 LCNL1Q6ZST4 164 aa12.72□□□□□ -0.37
PHRF1-203ENST00000416188 DKK4Q9UBT3 224 aa12.72□□□□□ -0.37
PHRF1-203ENST00000416188 H3BRM9 83 aa12.72□□□□□ -0.37
PHRF1-203ENST00000416188 J3QLI3 93 aa12.72□□□□□ -0.37
PHRF1-203ENST00000416188 CD5P06127 495 aa12.72□□□□□ -0.37
PHRF1-203ENST00000416188 ST20Q9HBF5 79 aa12.72□□□□□ -0.37
PHRF1-203ENST00000416188 SEPSECSQ9HD40 501 aaKnown RBP12.72□□□□□ -0.37
PHRF1-203ENST00000416188 RPL15P61313 204 aaKnown RBP12.71□□□□□ -0.37
PHRF1-203ENST00000416188 LINC00473A8K010 186 aa12.71□□□□□ -0.37
PHRF1-203ENST00000416188 LINC00614P0C842 121 aa12.71□□□□□ -0.37
PHRF1-203ENST00000416188 NDUFAF3Q9BU61 184 aa12.71□□□□□ -0.37
PHRF1-203ENST00000416188 MBNL3Q9NUK0 354 aaKnown RBP12.71□□□□□ -0.37
PHRF1-203ENST00000416188 EXOC3-AS1Q8N2X6 119 aa12.71□□□□□ -0.38
PHRF1-203ENST00000416188 OR5AN1Q8NGI8 311 aa12.71□□□□□ -0.38
PHRF1-203ENST00000416188 IGHV1-69DA0A0B4J2H0 117 aa12.71□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 33.4 ms