RNA–Protein interactions for RNA: ENST00000414879.5

PTPRF-205, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 2

Gene PTPRF, Length 4,836 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-205ENST00000414879 CBLN1P23435 193 aa9.69□□□□□ -0.86
PTPRF-205ENST00000414879 PSMB2P49721 201 aa9.69□□□□□ -0.86
PTPRF-205ENST00000414879 ZNF138P52744 262 aa9.69□□□□□ -0.86
PTPRF-205ENST00000414879 ZNF502Q8TBZ5 544 aa9.69□□□□□ -0.86
PTPRF-205ENST00000414879 PRO1933Q9H354 126 aa9.69□□□□□ -0.86
PTPRF-205ENST00000414879 DAZ1Q9NQZ3 744 aaKnown RBP9.69□□□□□ -0.86
PTPRF-205ENST00000414879 C10orf142B7Z368 130 aa9.69□□□□□ -0.86
PTPRF-205ENST00000414879 ZNF324O75467 553 aaPredicted RBP9.69□□□□□ -0.86
PTPRF-205ENST00000414879 IGHV2-70P01814 119 aa9.69□□□□□ -0.86
PTPRF-205ENST00000414879 LGALS3P17931 250 aaKnown RBP9.69□□□□□ -0.86
PTPRF-205ENST00000414879 SNRNP200O75643 2136 aaKnown RBP9.69□□□□□ -0.86
PTPRF-205ENST00000414879 TCRAP04437 139 aa9.69□□□□□ -0.86
PTPRF-205ENST00000414879 SLC25A34Q6PIV7 304 aa9.69□□□□□ -0.86
PTPRF-205ENST00000414879 PIP4P2Q8N4L2 257 aa9.69□□□□□ -0.86
PTPRF-205ENST00000414879 TMEM170AQ8WVE7 144 aa9.69□□□□□ -0.86
PTPRF-205ENST00000414879 SHANK2-AS3Q9BTD1 123 aa9.69□□□□□ -0.86
PTPRF-205ENST00000414879 ATG2AQ2TAZ0 1938 aa9.69□□□□□ -0.86
PTPRF-205ENST00000414879 BRD3OSQ6XYD6 125 aa9.68□□□□□ -0.86
PTPRF-205ENST00000414879 EIF3GO75821 320 aaKnown RBP eCLIP9.68□□□□□ -0.86
PTPRF-205ENST00000414879 IGKV3-20P01619 116 aa9.68□□□□□ -0.86
PTPRF-205ENST00000414879 TMEM219Q86XT9 240 aa9.68□□□□□ -0.86
PTPRF-205ENST00000414879 HS3ST6Q96QI5 342 aa9.68□□□□□ -0.86
PTPRF-205ENST00000414879 PAM16Q9Y3D7 125 aa9.68□□□□□ -0.86
PTPRF-205ENST00000414879 A0A1W2PPI3 338 aa9.68□□□□□ -0.86
PTPRF-205ENST00000414879 H3BRM9 83 aa9.68□□□□□ -0.86
PTPRF-205ENST00000414879 LHBP01229 141 aa9.68□□□□□ -0.86
PTPRF-205ENST00000414879 SOD3P08294 240 aa9.68□□□□□ -0.86
PTPRF-205ENST00000414879 MDKP21741 143 aaPredicted RBP9.68□□□□□ -0.86
PTPRF-205ENST00000414879 TCF23Q7RTU1 214 aa9.68□□□□□ -0.86
PTPRF-205ENST00000414879 MPDZO75970 2070 aa9.68□□□□□ -0.86
PTPRF-205ENST00000414879 SLC17A3O00476 420 aa9.68□□□□□ -0.86
PTPRF-205ENST00000414879 IGKV1-16P04430 117 aa9.68□□□□□ -0.86
PTPRF-205ENST00000414879 ORMDL2Q53FV1 153 aa9.68□□□□□ -0.86
PTPRF-205ENST00000414879 DTX2Q86UW9 622 aa9.68□□□□□ -0.86
PTPRF-205ENST00000414879 OCC1Q8TAD7 63 aa9.68□□□□□ -0.86
PTPRF-205ENST00000414879 ZNF414Q96IQ9 312 aa9.68□□□□□ -0.86
PTPRF-205ENST00000414879 SPTBN1Q01082 2364 aaKnown RBP9.67□□□□□ -0.86
PTPRF-205ENST00000414879 PMS2P5A8MQ11 134 aa9.67□□□□□ -0.86
PTPRF-205ENST00000414879 CD7P09564 240 aa9.67□□□□□ -0.86
PTPRF-205ENST00000414879 NMUP48645 174 aa9.67□□□□□ -0.86
PTPRF-205ENST00000414879 OR10J3Q5JRS4 329 aa9.67□□□□□ -0.86
PTPRF-205ENST00000414879 TTC28Q96AY4 2481 aa9.67□□□□□ -0.86
PTPRF-205ENST00000414879 RNF223E7ERA6 249 aa9.67□□□□□ -0.86
PTPRF-205ENST00000414879 COL5A1-AS1Q5SY13 56 aa9.67□□□□□ -0.86
PTPRF-205ENST00000414879 Q6ZRM9 215 aa9.67□□□□□ -0.86
PTPRF-205ENST00000414879 ZNF581Q9P0T4 197 aa9.67□□□□□ -0.86
PTPRF-205ENST00000414879 TP53BP1Q12888 1972 aaPredicted RBP9.67□□□□□ -0.86
PTPRF-205ENST00000414879 IGHV2-5P01817 119 aa9.67□□□□□ -0.86
PTPRF-205ENST00000414879 TDGF1P3P51864 188 aa9.67□□□□□ -0.86
PTPRF-205ENST00000414879 ST20Q9HBF5 79 aa9.67□□□□□ -0.86
PTPRF-205ENST00000414879 TMEM50AO95807 157 aa9.66□□□□□ -0.86
PTPRF-205ENST00000414879 TRGV2A0A075B6R0 118 aa9.66□□□□□ -0.86
PTPRF-205ENST00000414879 A0A0G2JRQ6 117 aa9.66□□□□□ -0.86
PTPRF-205ENST00000414879 OR11H12B2RN74 326 aa9.66□□□□□ -0.86
PTPRF-205ENST00000414879 PRB3Q04118 309 aaPredicted RBP9.66□□□□□ -0.86
PTPRF-205ENST00000414879 SPATA45Q537H7 98 aa9.66□□□□□ -0.86
PTPRF-205ENST00000414879 OR11H1Q8NG94 326 aa9.66□□□□□ -0.86
PTPRF-205ENST00000414879 OR11H2Q8NH07 326 aa9.66□□□□□ -0.86
PTPRF-205ENST00000414879 CHCHD1Q96BP2 118 aaKnown RBP9.66□□□□□ -0.86
PTPRF-205ENST00000414879 A0A1W2PNU3 283 aaPredicted RBP9.66□□□□□ -0.86
PTPRF-205ENST00000414879 A0A1W2PRX2 142 aa9.66□□□□□ -0.86
PTPRF-205ENST00000414879 KIAA1644Q3SXP7 199 aa9.66□□□□□ -0.86
PTPRF-205ENST00000414879 OR11H6Q8NGC7 330 aa9.66□□□□□ -0.86
PTPRF-205ENST00000414879 C5orf52A6NGY3 159 aa9.66□□□□□ -0.86
PTPRF-205ENST00000414879 APOHP02749 345 aaPredicted RBP9.66□□□□□ -0.86
PTPRF-205ENST00000414879 ELANEP08246 267 aa9.66□□□□□ -0.86
PTPRF-205ENST00000414879 GNG5P63218 68 aa9.66□□□□□ -0.86
PTPRF-205ENST00000414879 SRSF1Q07955 248 aaKnown RBP eCLIP9.65□□□□□ -0.86
PTPRF-205ENST00000414879 RAB37Q96AX2 223 aa9.65□□□□□ -0.86
PTPRF-205ENST00000414879 SCRT1Q9BWW7 348 aa9.65□□□□□ -0.86
PTPRF-205ENST00000414879 SEPSECSQ9HD40 501 aaKnown RBP9.65□□□□□ -0.86
PTPRF-205ENST00000414879 C11orf53Q8IXP5 236 aa9.65□□□□□ -0.86
PTPRF-205ENST00000414879 VSIRQ9H7M9 311 aa9.65□□□□□ -0.86
PTPRF-205ENST00000414879 FAM231BA6NCW3 169 aa9.65□□□□□ -0.86
PTPRF-205ENST00000414879 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP9.65□□□□□ -0.86
PTPRF-205ENST00000414879 PSG3Q16557 428 aa9.65□□□□□ -0.86
PTPRF-205ENST00000414879 GCSAMLQ5JQS6 135 aa9.65□□□□□ -0.86
PTPRF-205ENST00000414879 SCGB3A1Q96QR1 104 aa9.65□□□□□ -0.86
PTPRF-205ENST00000414879 RPLP1P05386 114 aaKnown RBP9.65□□□□□ -0.87
PTPRF-205ENST00000414879 NDUFA4O00483 81 aa9.64□□□□□ -0.87
PTPRF-205ENST00000414879 LY6HO94772 140 aa9.64□□□□□ -0.87
PTPRF-205ENST00000414879 GFRA4Q9GZZ7 299 aa9.64□□□□□ -0.87
PTPRF-205ENST00000414879 TMEM14CQ9P0S9 112 aa9.64□□□□□ -0.87
PTPRF-205ENST00000414879 MUC6Q6W4X9 2439 aa9.64□□□□□ -0.87
PTPRF-205ENST00000414879 UTRNP46939 3433 aa9.64□□□□□ -0.87
PTPRF-205ENST00000414879 C1QL4Q86Z23 238 aa9.64□□□□□ -0.87
PTPRF-205ENST00000414879 Q96MF0 132 aa9.64□□□□□ -0.87
PTPRF-205ENST00000414879 REG4Q9BYZ8 158 aa9.64□□□□□ -0.87
PTPRF-205ENST00000414879 TMEM131Q92545 1883 aa9.64□□□□□ -0.87
PTPRF-205ENST00000414879 ROS1P08922 2347 aa9.64□□□□□ -0.87
PTPRF-205ENST00000414879 IGHV3OR16-8A0A075B7F1 116 aa9.64□□□□□ -0.87
PTPRF-205ENST00000414879 ZNF415Q09FC8 603 aa9.64□□□□□ -0.87
PTPRF-205ENST00000414879 LINC01551Q86U37 167 aa9.64□□□□□ -0.87
PTPRF-205ENST00000414879 RHPN1-AS1Q9BWJ2 59 aa9.64□□□□□ -0.87
PTPRF-205ENST00000414879 RNASE7Q9H1E1 156 aaKnown RBP9.64□□□□□ -0.87
PTPRF-205ENST00000414879 COL4A2P08572 1712 aa9.63□□□□□ -0.87
PTPRF-205ENST00000414879 SAP30O75446 220 aa9.63□□□□□ -0.87
PTPRF-205ENST00000414879 NRN1Q9NPD7 142 aa9.63□□□□□ -0.87
PTPRF-205ENST00000414879 LAMTOR2Q9Y2Q5 125 aa9.63□□□□□ -0.87
PTPRF-205ENST00000414879 GRIFINA4D1Z8 144 aa9.63□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 73.8 ms